Ggra2474.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2474.t1
Unique Name	Ggra2474.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	785

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:422869..425223 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005847795.1
PFAMs	Thioredoxin
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03671
KEGG Pathway	ko04621,ko05418,map04621,map05418
Evalue	1.39e-31
EggNOG OGs	COG0526@1\|root,KOG0907@2759\|Eukaryota,382XP@33090\|Viridiplantae,34NCP@3041\|Chlorophyta
Description	Thioredoxin
COG category	O
BRITE	ko00000,ko00001,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2474	Ggra2474	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 422869..425223 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2474.t1.start1	Ggra2474.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 422869..422871 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2474.t1.CDS1	Ggra2474.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 422869..425223 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2474.t1.exon1	Ggra2474.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 422869..425223 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2474.t1.stop1	Ggra2474.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 425221..425223 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2474.t1	Ggra2474.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 422869..425223 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:422869..425223+
coding sequence from alignment at tig00000005_pilon:422869..425223+

mRNA sequence

>Ggra2474.t1 ID=Ggra2474.t1|Name=Ggra2474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=785bp
MSLFKRTAAEVDELEAAHAALSTSTQPIESRKKELTSTQTKLASLQPAVG
KFVVKADQGEKDPNKRVYGPSMVLKIRELSAKLVTLSEAVDKTAASIDAQ
YAEHEKELEMQHEKQRAEEERLRLEEQKRLEQQRIEEERQAKLLEEQRRR
EEQLRIEKEKVEKEAALKRAQEEAQFKEQQRIAKEKEDAEKKEREQKQLR
EEQAAEEAKRKEEQQRQAEAASKGISLTVKTTRGKSLPLQNIPPTCHVYE
LKELIEKAHGVPKVAQRLIFQGRLLSDAKTIDTFNVKDGCAVHLVENSRA
AASASPATAPAAPKPLVPPGTVCHLANGKPQFDSILQNCANRRLVVVDWS
APWCGPCRTIAPVYDRLANRFSDVTFVKVDTEATAANAELASQSGISAYP
TFHYYINSRCVHSFSGANATNIESGIRTYRTQVSPSATTSSGSGSRSAAG
PSPPGQLTQSVLRALTTLKQNCSQQDFIVAVRTLLTFVRNVVNNPSEGKY
RKVRTANSTFQTRLASKPGGTDAMLAFGFERVQENGDSFLVLSEQAAANP
ELSTINTQLEQALAAAGGSAAPQPSQPRSTTAPSPGAGATNNIGFNPLAG
MMGGGVPPGLGNMMGDESMQSLVTQMLADPNFMQIAQEITADPSAMQRLA
EAHRAMTSGDFATVQRLQNDPALMRLQAAMASNPTVMNEAMRQLATGMGN
AFPGGQMPPVPGAGTPGFNAANQATQGQTPSNPPPPAYPGAPTTVEEEER
LLQEAIRLSMQDSGTDSNQKSEDKNGEQDPSNQN*

spliced messenger RNA

>Ggra2474.t1 ID=Ggra2474.t1|Name=Ggra2474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2355bp|location=Sequence derived from alignment at tig00000005_pilon:422869..425223+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTCTTTAAACGAACCGCCGCCGAAGTCGACGAGCTGGAAGCGGC
ACACGCAGCCCTCAGCACCTCCACGCAACCTATAGAGAGCCGCAAGAAGG
AGCTGACCTCCACCCAAACCAAGCTGGCTTCTCTTCAGCCAGCGGTCGGA
AAGTTCGTTGTCAAAGCTGACCAAGGCGAAAAGGATCCTAACAAGCGCGT
TTACGGCCCCTCCATGGTGCTCAAGATTCGTGAGCTCAGCGCCAAGCTAG
TCACTCTTTCGGAAGCTGTCGACAAAACCGCAGCTAGTATAGATGCACAA
TATGCAGAACACGAGAAGGAGCTCGAGATGCAGCACGAGAAGCAGCGAGC
GGAGGAGGAACGCCTACGCCTAGAAGAACAAAAAAGACTCGAGCAGCAGC
GCATTGAGGAAGAACGACAAGCAAAGCTTCTGGAGGAACAGCGAAGAAGG
GAGGAGCAATTGCGGATAGAAAAAGAGAAGGTGGAGAAGGAAGCTGCTTT
GAAGCGTGCGCAAGAAGAAGCCCAGTTCAAGGAACAACAACGTATTGCCA
AGGAGAAAGAGGACGCTGAAAAGAAGGAGCGCGAGCAAAAGCAACTACGC
GAAGAGCAAGCGGCAGAAGAAGCAAAACGCAAAGAAGAACAGCAAAGACA
GGCCGAGGCAGCGTCCAAGGGTATCTCTCTAACAGTCAAGACCACTCGCG
GCAAGTCTCTGCCGCTTCAGAATATACCCCCTACGTGTCACGTATATGAG
CTCAAGGAACTCATCGAAAAGGCGCATGGAGTACCCAAGGTAGCCCAACG
TCTCATTTTTCAGGGACGCCTGCTTTCGGATGCCAAAACCATTGATACGT
TCAATGTCAAAGATGGCTGTGCTGTCCATCTTGTCGAAAACAGTCGCGCT
GCCGCATCTGCTTCACCAGCCACAGCTCCTGCCGCCCCCAAGCCGCTTGT
TCCACCAGGAACCGTGTGTCATCTAGCTAATGGAAAGCCGCAGTTTGATT
CTATTTTGCAAAACTGCGCGAATCGTCGTCTCGTTGTCGTTGATTGGTCT
GCTCCCTGGTGCGGTCCCTGTCGCACGATCGCCCCTGTCTATGACCGCCT
TGCTAATCGATTTTCTGACGTCACTTTTGTTAAAGTTGATACCGAAGCAA
CTGCTGCAAACGCCGAGCTCGCTAGTCAGTCTGGTATCTCTGCCTATCCA
ACCTTTCACTACTATATTAACTCTCGCTGCGTGCATTCCTTCTCTGGGGC
CAATGCTACCAACATAGAGTCGGGTATCCGCACGTATCGCACCCAAGTAT
CCCCATCAGCAACCACTTCATCGGGCTCTGGTTCGCGGTCAGCTGCAGGG
CCTTCTCCTCCTGGACAGCTCACACAGAGCGTGCTCAGAGCGCTTACCAC
CTTGAAACAGAATTGTTCGCAACAGGATTTCATTGTTGCGGTCCGAACAC
TGCTCACCTTTGTTCGTAATGTGGTCAACAACCCTAGTGAAGGGAAGTAC
CGTAAGGTACGAACGGCGAACTCTACTTTTCAAACAAGGTTAGCCAGTAA
GCCTGGCGGCACCGATGCCATGCTTGCGTTTGGTTTTGAACGAGTCCAAG
AGAACGGCGATTCTTTCCTTGTATTATCTGAACAAGCGGCGGCAAACCCT
GAGTTAAGCACGATCAACACCCAGTTGGAACAGGCGTTGGCGGCAGCTGG
AGGTTCGGCCGCTCCACAACCCTCTCAGCCGCGAAGCACCACTGCGCCGT
CTCCTGGAGCAGGGGCCACAAACAACATTGGATTCAATCCCTTAGCTGGT
ATGATGGGTGGTGGGGTCCCCCCTGGTCTTGGCAACATGATGGGCGATGA
GTCAATGCAGTCCCTGGTTACTCAAATGCTTGCAGATCCTAACTTTATGC
AGATTGCCCAAGAGATCACCGCAGACCCTTCCGCAATGCAGCGACTGGCT
GAGGCTCACAGAGCAATGACCAGCGGGGATTTTGCCACAGTACAAAGACT
GCAGAACGACCCAGCTCTCATGCGGCTGCAGGCAGCTATGGCATCTAATC
CAACCGTCATGAACGAAGCAATGCGCCAACTTGCGACCGGCATGGGCAAT
GCCTTCCCTGGTGGACAAATGCCTCCTGTACCTGGAGCAGGAACACCGGG
CTTTAATGCTGCAAACCAAGCTACCCAAGGTCAGACGCCTTCAAACCCCC
CACCGCCCGCATATCCCGGGGCTCCCACCACCGTTGAAGAAGAGGAACGT
TTGTTGCAAGAAGCCATTCGTTTGTCAATGCAAGATTCAGGTACCGACAG
CAATCAGAAGTCAGAAGATAAAAACGGAGAGCAAGACCCTTCAAACCAAA
ACTGA

protein sequence of Ggra2474.t1

>Ggra2474.t1 ID=Ggra2474.t1|Name=Ggra2474.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=785bp
MSLFKRTAAEVDELEAAHAALSTSTQPIESRKKELTSTQTKLASLQPAVG
KFVVKADQGEKDPNKRVYGPSMVLKIRELSAKLVTLSEAVDKTAASIDAQ
YAEHEKELEMQHEKQRAEEERLRLEEQKRLEQQRIEEERQAKLLEEQRRR
EEQLRIEKEKVEKEAALKRAQEEAQFKEQQRIAKEKEDAEKKEREQKQLR
EEQAAEEAKRKEEQQRQAEAASKGISLTVKTTRGKSLPLQNIPPTCHVYE
LKELIEKAHGVPKVAQRLIFQGRLLSDAKTIDTFNVKDGCAVHLVENSRA
AASASPATAPAAPKPLVPPGTVCHLANGKPQFDSILQNCANRRLVVVDWS
APWCGPCRTIAPVYDRLANRFSDVTFVKVDTEATAANAELASQSGISAYP
TFHYYINSRCVHSFSGANATNIESGIRTYRTQVSPSATTSSGSGSRSAAG
PSPPGQLTQSVLRALTTLKQNCSQQDFIVAVRTLLTFVRNVVNNPSEGKY
RKVRTANSTFQTRLASKPGGTDAMLAFGFERVQENGDSFLVLSEQAAANP
ELSTINTQLEQALAAAGGSAAPQPSQPRSTTAPSPGAGATNNIGFNPLAG
MMGGGVPPGLGNMMGDESMQSLVTQMLADPNFMQIAQEITADPSAMQRLA
EAHRAMTSGDFATVQRLQNDPALMRLQAAMASNPTVMNEAMRQLATGMGN
AFPGGQMPPVPGAGTPGFNAANQATQGQTPSNPPPPAYPGAPTTVEEEER
LLQEAIRLSMQDSGTDSNQKSEDKNGEQDPSNQN*

mRNA from alignment at tig00000005_pilon:422869..425223+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2474.t1 ID=Ggra2474.t1|Name=Ggra2474.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2355bp|location=Sequence derived from alignment at tig00000005_pilon:422869..425223+ (Gracilaria gracilis GNS1m male)
ATGTCTCTCTTTAAACGAACCGCCGCCGAAGTCGACGAGCTGGAAGCGGC
ACACGCAGCCCTCAGCACCTCCACGCAACCTATAGAGAGCCGCAAGAAGG
AGCTGACCTCCACCCAAACCAAGCTGGCTTCTCTTCAGCCAGCGGTCGGA
AAGTTCGTTGTCAAAGCTGACCAAGGCGAAAAGGATCCTAACAAGCGCGT
TTACGGCCCCTCCATGGTGCTCAAGATTCGTGAGCTCAGCGCCAAGCTAG
TCACTCTTTCGGAAGCTGTCGACAAAACCGCAGCTAGTATAGATGCACAA
TATGCAGAACACGAGAAGGAGCTCGAGATGCAGCACGAGAAGCAGCGAGC
GGAGGAGGAACGCCTACGCCTAGAAGAACAAAAAAGACTCGAGCAGCAGC
GCATTGAGGAAGAACGACAAGCAAAGCTTCTGGAGGAACAGCGAAGAAGG
GAGGAGCAATTGCGGATAGAAAAAGAGAAGGTGGAGAAGGAAGCTGCTTT
GAAGCGTGCGCAAGAAGAAGCCCAGTTCAAGGAACAACAACGTATTGCCA
AGGAGAAAGAGGACGCTGAAAAGAAGGAGCGCGAGCAAAAGCAACTACGC
GAAGAGCAAGCGGCAGAAGAAGCAAAACGCAAAGAAGAACAGCAAAGACA
GGCCGAGGCAGCGTCCAAGGGTATCTCTCTAACAGTCAAGACCACTCGCG
GCAAGTCTCTGCCGCTTCAGAATATACCCCCTACGTGTCACGTATATGAG
CTCAAGGAACTCATCGAAAAGGCGCATGGAGTACCCAAGGTAGCCCAACG
TCTCATTTTTCAGGGACGCCTGCTTTCGGATGCCAAAACCATTGATACGT
TCAATGTCAAAGATGGCTGTGCTGTCCATCTTGTCGAAAACAGTCGCGCT
GCCGCATCTGCTTCACCAGCCACAGCTCCTGCCGCCCCCAAGCCGCTTGT
TCCACCAGGAACCGTGTGTCATCTAGCTAATGGAAAGCCGCAGTTTGATT
CTATTTTGCAAAACTGCGCGAATCGTCGTCTCGTTGTCGTTGATTGGTCT
GCTCCCTGGTGCGGTCCCTGTCGCACGATCGCCCCTGTCTATGACCGCCT
TGCTAATCGATTTTCTGACGTCACTTTTGTTAAAGTTGATACCGAAGCAA
CTGCTGCAAACGCCGAGCTCGCTAGTCAGTCTGGTATCTCTGCCTATCCA
ACCTTTCACTACTATATTAACTCTCGCTGCGTGCATTCCTTCTCTGGGGC
CAATGCTACCAACATAGAGTCGGGTATCCGCACGTATCGCACCCAAGTAT
CCCCATCAGCAACCACTTCATCGGGCTCTGGTTCGCGGTCAGCTGCAGGG
CCTTCTCCTCCTGGACAGCTCACACAGAGCGTGCTCAGAGCGCTTACCAC
CTTGAAACAGAATTGTTCGCAACAGGATTTCATTGTTGCGGTCCGAACAC
TGCTCACCTTTGTTCGTAATGTGGTCAACAACCCTAGTGAAGGGAAGTAC
CGTAAGGTACGAACGGCGAACTCTACTTTTCAAACAAGGTTAGCCAGTAA
GCCTGGCGGCACCGATGCCATGCTTGCGTTTGGTTTTGAACGAGTCCAAG
AGAACGGCGATTCTTTCCTTGTATTATCTGAACAAGCGGCGGCAAACCCT
GAGTTAAGCACGATCAACACCCAGTTGGAACAGGCGTTGGCGGCAGCTGG
AGGTTCGGCCGCTCCACAACCCTCTCAGCCGCGAAGCACCACTGCGCCGT
CTCCTGGAGCAGGGGCCACAAACAACATTGGATTCAATCCCTTAGCTGGT
ATGATGGGTGGTGGGGTCCCCCCTGGTCTTGGCAACATGATGGGCGATGA
GTCAATGCAGTCCCTGGTTACTCAAATGCTTGCAGATCCTAACTTTATGC
AGATTGCCCAAGAGATCACCGCAGACCCTTCCGCAATGCAGCGACTGGCT
GAGGCTCACAGAGCAATGACCAGCGGGGATTTTGCCACAGTACAAAGACT
GCAGAACGACCCAGCTCTCATGCGGCTGCAGGCAGCTATGGCATCTAATC
CAACCGTCATGAACGAAGCAATGCGCCAACTTGCGACCGGCATGGGCAAT
GCCTTCCCTGGTGGACAAATGCCTCCTGTACCTGGAGCAGGAACACCGGG
CTTTAATGCTGCAAACCAAGCTACCCAAGGTCAGACGCCTTCAAACCCCC
CACCGCCCGCATATCCCGGGGCTCCCACCACCGTTGAAGAAGAGGAACGT
TTGTTGCAAGAAGCCATTCGTTTGTCAATGCAAGATTCAGGTACCGACAG
CAATCAGAAGTCAGAAGATAAAAACGGAGAGCAAGACCCTTCAAACCAAA
ACTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:422869..425223+

>Ggra2474.t1 ID=Ggra2474.t1|Name=Ggra2474.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2355bp|location=Sequence derived from alignment at tig00000005_pilon:422869..425223+ (Gracilaria gracilis GNS1m male)
ATGTCTCTCTTTAAACGAACCGCCGCCGAAGTCGACGAGCTGGAAGCGGC
ACACGCAGCCCTCAGCACCTCCACGCAACCTATAGAGAGCCGCAAGAAGG
AGCTGACCTCCACCCAAACCAAGCTGGCTTCTCTTCAGCCAGCGGTCGGA
AAGTTCGTTGTCAAAGCTGACCAAGGCGAAAAGGATCCTAACAAGCGCGT
TTACGGCCCCTCCATGGTGCTCAAGATTCGTGAGCTCAGCGCCAAGCTAG
TCACTCTTTCGGAAGCTGTCGACAAAACCGCAGCTAGTATAGATGCACAA
TATGCAGAACACGAGAAGGAGCTCGAGATGCAGCACGAGAAGCAGCGAGC
GGAGGAGGAACGCCTACGCCTAGAAGAACAAAAAAGACTCGAGCAGCAGC
GCATTGAGGAAGAACGACAAGCAAAGCTTCTGGAGGAACAGCGAAGAAGG
GAGGAGCAATTGCGGATAGAAAAAGAGAAGGTGGAGAAGGAAGCTGCTTT
GAAGCGTGCGCAAGAAGAAGCCCAGTTCAAGGAACAACAACGTATTGCCA
AGGAGAAAGAGGACGCTGAAAAGAAGGAGCGCGAGCAAAAGCAACTACGC
GAAGAGCAAGCGGCAGAAGAAGCAAAACGCAAAGAAGAACAGCAAAGACA
GGCCGAGGCAGCGTCCAAGGGTATCTCTCTAACAGTCAAGACCACTCGCG
GCAAGTCTCTGCCGCTTCAGAATATACCCCCTACGTGTCACGTATATGAG
CTCAAGGAACTCATCGAAAAGGCGCATGGAGTACCCAAGGTAGCCCAACG
TCTCATTTTTCAGGGACGCCTGCTTTCGGATGCCAAAACCATTGATACGT
TCAATGTCAAAGATGGCTGTGCTGTCCATCTTGTCGAAAACAGTCGCGCT
GCCGCATCTGCTTCACCAGCCACAGCTCCTGCCGCCCCCAAGCCGCTTGT
TCCACCAGGAACCGTGTGTCATCTAGCTAATGGAAAGCCGCAGTTTGATT
CTATTTTGCAAAACTGCGCGAATCGTCGTCTCGTTGTCGTTGATTGGTCT
GCTCCCTGGTGCGGTCCCTGTCGCACGATCGCCCCTGTCTATGACCGCCT
TGCTAATCGATTTTCTGACGTCACTTTTGTTAAAGTTGATACCGAAGCAA
CTGCTGCAAACGCCGAGCTCGCTAGTCAGTCTGGTATCTCTGCCTATCCA
ACCTTTCACTACTATATTAACTCTCGCTGCGTGCATTCCTTCTCTGGGGC
CAATGCTACCAACATAGAGTCGGGTATCCGCACGTATCGCACCCAAGTAT
CCCCATCAGCAACCACTTCATCGGGCTCTGGTTCGCGGTCAGCTGCAGGG
CCTTCTCCTCCTGGACAGCTCACACAGAGCGTGCTCAGAGCGCTTACCAC
CTTGAAACAGAATTGTTCGCAACAGGATTTCATTGTTGCGGTCCGAACAC
TGCTCACCTTTGTTCGTAATGTGGTCAACAACCCTAGTGAAGGGAAGTAC
CGTAAGGTACGAACGGCGAACTCTACTTTTCAAACAAGGTTAGCCAGTAA
GCCTGGCGGCACCGATGCCATGCTTGCGTTTGGTTTTGAACGAGTCCAAG
AGAACGGCGATTCTTTCCTTGTATTATCTGAACAAGCGGCGGCAAACCCT
GAGTTAAGCACGATCAACACCCAGTTGGAACAGGCGTTGGCGGCAGCTGG
AGGTTCGGCCGCTCCACAACCCTCTCAGCCGCGAAGCACCACTGCGCCGT
CTCCTGGAGCAGGGGCCACAAACAACATTGGATTCAATCCCTTAGCTGGT
ATGATGGGTGGTGGGGTCCCCCCTGGTCTTGGCAACATGATGGGCGATGA
GTCAATGCAGTCCCTGGTTACTCAAATGCTTGCAGATCCTAACTTTATGC
AGATTGCCCAAGAGATCACCGCAGACCCTTCCGCAATGCAGCGACTGGCT
GAGGCTCACAGAGCAATGACCAGCGGGGATTTTGCCACAGTACAAAGACT
GCAGAACGACCCAGCTCTCATGCGGCTGCAGGCAGCTATGGCATCTAATC
CAACCGTCATGAACGAAGCAATGCGCCAACTTGCGACCGGCATGGGCAAT
GCCTTCCCTGGTGGACAAATGCCTCCTGTACCTGGAGCAGGAACACCGGG
CTTTAATGCTGCAAACCAAGCTACCCAAGGTCAGACGCCTTCAAACCCCC
CACCGCCCGCATATCCCGGGGCTCCCACCACCGTTGAAGAAGAGGAACGT
TTGTTGCAAGAAGCCATTCGTTTGTCAATGCAAGATTCAGGTACCGACAG
CAATCAGAAGTCAGAAGATAAAAACGGAGAGCAAGACCCTTCAAACCAAA
ACTGA