Ggra2473.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2473.t1
Unique Name	Ggra2473.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	543

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:420708..422336 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3694.POPTR_0008s22660.1
PFAMs	DIRP,Myb_DNA-binding
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K21773
KEGG Pathway	ko04218,map04218
Evalue	2.57e-05
EggNOG OGs	KOG1019@1\|root,KOG1019@2759\|Eukaryota,37KSW@33090\|Viridiplantae,3G9MC@35493\|Streptophyta,4JKR6@91835\|fabids
Description	Protein ALWAYS EARLY
COG category	K
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2473	Ggra2473	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 420708..422336 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2473.t1.stop1	Ggra2473.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 420708..420710 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2473.t1.CDS1	Ggra2473.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 420708..422336 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2473.t1.exon1	Ggra2473.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 420708..422336 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2473.t1.start1	Ggra2473.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 422334..422336 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2473.t1	Ggra2473.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 420708..422336 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:420708..422336-
coding sequence from alignment at tig00000005_pilon:420708..422336-

mRNA sequence

>Ggra2473.t1 ID=Ggra2473.t1|Name=Ggra2473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MRRKSAPPQPPPKKRARSSSAVERVAASPRALHWAYAEWFQSTIDEPYFT
HSDFHAVVASRMVQLSDMLSTRLTRMQLARIRAAMCTMLPGGFVQPRRFS
SSFLYAERQELSMYRNDARRVLRGLDLLPSTDPTTGDALPQIWWSRHRCG
PPRPLQRGAQVLVRTFSPPLNGHKLAQLHIRPAIFLSLEADSQNRVRFQD
DATEHIVSDLDVMWHPSSSIGSDSLAQSPVLPNAQSLAPSPGSPPFPFSP
SAMPTPVFDFSHFPEASHSVIQLYQTPRPTLVSPRKPLEVKGQCADGYEC
EVDFHRIAESMQLLDRKEQLLSSLRMLNDAVSTTTTPGEPPSESTQAKYD
SILAALDQVNVEINMHIEPDRSTPHPSPPNLCISADMDSAKLDETPEKNQ
SRPVSLLKIAPTSPILAKREGGTPGRTIPTSPQLRPENMAKNVDFRCAAG
TALLAKALTKAALSKLHPDNGIKSASTPIRADVMECVSACIAVLIRARTT
RDLHCVDELVDGLRSRFPANAEAIEAIQAAARLLERSSSEGV*

spliced messenger RNA

>Ggra2473.t1 ID=Ggra2473.t1|Name=Ggra2473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000005_pilon:420708..422336- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTAGAAAGAGTGCCCCGCCGCAGCCGCCGCCTAAGAAGCGCGCGCG
CTCGTCGTCCGCCGTGGAGCGAGTCGCCGCGTCGCCGCGCGCATTGCACT
GGGCGTATGCCGAGTGGTTCCAGAGCACCATCGACGAGCCCTACTTCACA
CACTCCGACTTCCATGCTGTCGTTGCCAGCCGTATGGTCCAGCTCTCCGA
TATGCTCTCCACTCGCCTCACGCGGATGCAACTGGCGCGCATTCGCGCTG
CCATGTGCACCATGCTGCCTGGCGGTTTCGTGCAGCCGCGTCGCTTCTCC
TCCAGCTTTTTGTATGCTGAGCGTCAGGAGCTTTCCATGTACCGCAACGA
TGCGCGTCGCGTGCTCCGCGGTCTGGACTTGCTGCCGTCCACGGACCCTA
CCACTGGTGATGCGCTGCCGCAGATCTGGTGGTCACGCCATCGTTGTGGG
CCTCCACGTCCGCTGCAGCGTGGCGCCCAAGTTCTCGTCCGCACGTTTTC
GCCCCCGCTTAATGGCCATAAGCTTGCTCAGCTGCACATCCGCCCTGCAA
TTTTTCTCTCCTTGGAAGCAGATAGTCAGAATCGCGTTCGTTTTCAGGAT
GACGCCACTGAGCACATTGTATCCGACTTGGATGTCATGTGGCACCCGTC
GTCATCAATTGGATCAGATTCTCTCGCCCAATCACCAGTGCTACCAAACG
CCCAATCCCTGGCTCCCTCTCCAGGTTCACCTCCATTTCCTTTCTCCCCA
TCCGCCATGCCAACGCCTGTGTTCGATTTTTCCCACTTTCCTGAAGCTTC
GCACAGCGTTATTCAGTTGTACCAAACCCCGCGTCCCACGCTCGTTTCAC
CTCGCAAACCGCTCGAAGTCAAGGGTCAGTGCGCTGATGGTTACGAATGT
GAGGTTGACTTCCACAGAATCGCTGAGTCCATGCAACTCCTGGACCGCAA
GGAGCAACTTCTTTCCTCCTTGAGAATGCTCAACGACGCCGTATCTACTA
CCACAACACCGGGGGAACCCCCATCGGAGTCCACTCAGGCCAAGTACGAT
TCTATTCTTGCCGCTCTCGACCAGGTTAACGTCGAAATTAACATGCACAT
TGAACCTGATCGCTCCACTCCACATCCCTCTCCACCGAACCTCTGTATCA
GTGCAGATATGGATTCAGCGAAGCTAGATGAGACCCCAGAGAAAAACCAG
TCTCGACCGGTGTCTTTGCTCAAAATAGCGCCCACATCTCCAATCCTAGC
AAAGAGGGAAGGCGGCACTCCTGGAAGAACCATACCAACATCGCCTCAAC
TTCGCCCCGAGAATATGGCAAAGAATGTCGACTTCCGCTGTGCCGCGGGA
ACGGCCTTGTTGGCCAAAGCCCTCACAAAGGCTGCCCTTTCAAAGCTTCA
TCCTGACAATGGCATCAAGTCAGCATCCACCCCGATCCGGGCGGATGTTA
TGGAGTGCGTCAGTGCATGTATCGCTGTACTTATTCGAGCACGAACTACG
CGAGACCTTCATTGTGTTGACGAGCTTGTTGACGGGCTGCGATCTCGCTT
TCCGGCTAACGCGGAAGCCATCGAAGCCATTCAAGCTGCTGCCAGACTCT
TGGAGCGCAGCTCTAGTGAAGGCGTGTAG

protein sequence of Ggra2473.t1

>Ggra2473.t1 ID=Ggra2473.t1|Name=Ggra2473.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MRRKSAPPQPPPKKRARSSSAVERVAASPRALHWAYAEWFQSTIDEPYFT
HSDFHAVVASRMVQLSDMLSTRLTRMQLARIRAAMCTMLPGGFVQPRRFS
SSFLYAERQELSMYRNDARRVLRGLDLLPSTDPTTGDALPQIWWSRHRCG
PPRPLQRGAQVLVRTFSPPLNGHKLAQLHIRPAIFLSLEADSQNRVRFQD
DATEHIVSDLDVMWHPSSSIGSDSLAQSPVLPNAQSLAPSPGSPPFPFSP
SAMPTPVFDFSHFPEASHSVIQLYQTPRPTLVSPRKPLEVKGQCADGYEC
EVDFHRIAESMQLLDRKEQLLSSLRMLNDAVSTTTTPGEPPSESTQAKYD
SILAALDQVNVEINMHIEPDRSTPHPSPPNLCISADMDSAKLDETPEKNQ
SRPVSLLKIAPTSPILAKREGGTPGRTIPTSPQLRPENMAKNVDFRCAAG
TALLAKALTKAALSKLHPDNGIKSASTPIRADVMECVSACIAVLIRARTT
RDLHCVDELVDGLRSRFPANAEAIEAIQAAARLLERSSSEGV*

mRNA from alignment at tig00000005_pilon:420708..422336-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2473.t1 ID=Ggra2473.t1|Name=Ggra2473.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000005_pilon:420708..422336- (Gracilaria gracilis GNS1m male)
ATGCGTAGAAAGAGTGCCCCGCCGCAGCCGCCGCCTAAGAAGCGCGCGCG
CTCGTCGTCCGCCGTGGAGCGAGTCGCCGCGTCGCCGCGCGCATTGCACT
GGGCGTATGCCGAGTGGTTCCAGAGCACCATCGACGAGCCCTACTTCACA
CACTCCGACTTCCATGCTGTCGTTGCCAGCCGTATGGTCCAGCTCTCCGA
TATGCTCTCCACTCGCCTCACGCGGATGCAACTGGCGCGCATTCGCGCTG
CCATGTGCACCATGCTGCCTGGCGGTTTCGTGCAGCCGCGTCGCTTCTCC
TCCAGCTTTTTGTATGCTGAGCGTCAGGAGCTTTCCATGTACCGCAACGA
TGCGCGTCGCGTGCTCCGCGGTCTGGACTTGCTGCCGTCCACGGACCCTA
CCACTGGTGATGCGCTGCCGCAGATCTGGTGGTCACGCCATCGTTGTGGG
CCTCCACGTCCGCTGCAGCGTGGCGCCCAAGTTCTCGTCCGCACGTTTTC
GCCCCCGCTTAATGGCCATAAGCTTGCTCAGCTGCACATCCGCCCTGCAA
TTTTTCTCTCCTTGGAAGCAGATAGTCAGAATCGCGTTCGTTTTCAGGAT
GACGCCACTGAGCACATTGTATCCGACTTGGATGTCATGTGGCACCCGTC
GTCATCAATTGGATCAGATTCTCTCGCCCAATCACCAGTGCTACCAAACG
CCCAATCCCTGGCTCCCTCTCCAGGTTCACCTCCATTTCCTTTCTCCCCA
TCCGCCATGCCAACGCCTGTGTTCGATTTTTCCCACTTTCCTGAAGCTTC
GCACAGCGTTATTCAGTTGTACCAAACCCCGCGTCCCACGCTCGTTTCAC
CTCGCAAACCGCTCGAAGTCAAGGGTCAGTGCGCTGATGGTTACGAATGT
GAGGTTGACTTCCACAGAATCGCTGAGTCCATGCAACTCCTGGACCGCAA
GGAGCAACTTCTTTCCTCCTTGAGAATGCTCAACGACGCCGTATCTACTA
CCACAACACCGGGGGAACCCCCATCGGAGTCCACTCAGGCCAAGTACGAT
TCTATTCTTGCCGCTCTCGACCAGGTTAACGTCGAAATTAACATGCACAT
TGAACCTGATCGCTCCACTCCACATCCCTCTCCACCGAACCTCTGTATCA
GTGCAGATATGGATTCAGCGAAGCTAGATGAGACCCCAGAGAAAAACCAG
TCTCGACCGGTGTCTTTGCTCAAAATAGCGCCCACATCTCCAATCCTAGC
AAAGAGGGAAGGCGGCACTCCTGGAAGAACCATACCAACATCGCCTCAAC
TTCGCCCCGAGAATATGGCAAAGAATGTCGACTTCCGCTGTGCCGCGGGA
ACGGCCTTGTTGGCCAAAGCCCTCACAAAGGCTGCCCTTTCAAAGCTTCA
TCCTGACAATGGCATCAAGTCAGCATCCACCCCGATCCGGGCGGATGTTA
TGGAGTGCGTCAGTGCATGTATCGCTGTACTTATTCGAGCACGAACTACG
CGAGACCTTCATTGTGTTGACGAGCTTGTTGACGGGCTGCGATCTCGCTT
TCCGGCTAACGCGGAAGCCATCGAAGCCATTCAAGCTGCTGCCAGACTCT
TGGAGCGCAGCTCTAGTGAAGGCGTGTAG

Coding sequence (CDS) from alignment at tig00000005_pilon:420708..422336-

>Ggra2473.t1 ID=Ggra2473.t1|Name=Ggra2473.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000005_pilon:420708..422336- (Gracilaria gracilis GNS1m male)
ATGCGTAGAAAGAGTGCCCCGCCGCAGCCGCCGCCTAAGAAGCGCGCGCG
CTCGTCGTCCGCCGTGGAGCGAGTCGCCGCGTCGCCGCGCGCATTGCACT
GGGCGTATGCCGAGTGGTTCCAGAGCACCATCGACGAGCCCTACTTCACA
CACTCCGACTTCCATGCTGTCGTTGCCAGCCGTATGGTCCAGCTCTCCGA
TATGCTCTCCACTCGCCTCACGCGGATGCAACTGGCGCGCATTCGCGCTG
CCATGTGCACCATGCTGCCTGGCGGTTTCGTGCAGCCGCGTCGCTTCTCC
TCCAGCTTTTTGTATGCTGAGCGTCAGGAGCTTTCCATGTACCGCAACGA
TGCGCGTCGCGTGCTCCGCGGTCTGGACTTGCTGCCGTCCACGGACCCTA
CCACTGGTGATGCGCTGCCGCAGATCTGGTGGTCACGCCATCGTTGTGGG
CCTCCACGTCCGCTGCAGCGTGGCGCCCAAGTTCTCGTCCGCACGTTTTC
GCCCCCGCTTAATGGCCATAAGCTTGCTCAGCTGCACATCCGCCCTGCAA
TTTTTCTCTCCTTGGAAGCAGATAGTCAGAATCGCGTTCGTTTTCAGGAT
GACGCCACTGAGCACATTGTATCCGACTTGGATGTCATGTGGCACCCGTC
GTCATCAATTGGATCAGATTCTCTCGCCCAATCACCAGTGCTACCAAACG
CCCAATCCCTGGCTCCCTCTCCAGGTTCACCTCCATTTCCTTTCTCCCCA
TCCGCCATGCCAACGCCTGTGTTCGATTTTTCCCACTTTCCTGAAGCTTC
GCACAGCGTTATTCAGTTGTACCAAACCCCGCGTCCCACGCTCGTTTCAC
CTCGCAAACCGCTCGAAGTCAAGGGTCAGTGCGCTGATGGTTACGAATGT
GAGGTTGACTTCCACAGAATCGCTGAGTCCATGCAACTCCTGGACCGCAA
GGAGCAACTTCTTTCCTCCTTGAGAATGCTCAACGACGCCGTATCTACTA
CCACAACACCGGGGGAACCCCCATCGGAGTCCACTCAGGCCAAGTACGAT
TCTATTCTTGCCGCTCTCGACCAGGTTAACGTCGAAATTAACATGCACAT
TGAACCTGATCGCTCCACTCCACATCCCTCTCCACCGAACCTCTGTATCA
GTGCAGATATGGATTCAGCGAAGCTAGATGAGACCCCAGAGAAAAACCAG
TCTCGACCGGTGTCTTTGCTCAAAATAGCGCCCACATCTCCAATCCTAGC
AAAGAGGGAAGGCGGCACTCCTGGAAGAACCATACCAACATCGCCTCAAC
TTCGCCCCGAGAATATGGCAAAGAATGTCGACTTCCGCTGTGCCGCGGGA
ACGGCCTTGTTGGCCAAAGCCCTCACAAAGGCTGCCCTTTCAAAGCTTCA
TCCTGACAATGGCATCAAGTCAGCATCCACCCCGATCCGGGCGGATGTTA
TGGAGTGCGTCAGTGCATGTATCGCTGTACTTATTCGAGCACGAACTACG
CGAGACCTTCATTGTGTTGACGAGCTTGTTGACGGGCTGCGATCTCGCTT
TCCGGCTAACGCGGAAGCCATCGAAGCCATTCAAGCTGCTGCCAGACTCT
TGGAGCGCAGCTCTAGTGAAGGCGTGTAG