Ggra2460.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2460.t1
Unique NameGgra2460.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length109
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:387835..388232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2460Ggra2460Gracilaria gracilis GNS1m malegenetig00000005_pilon 387835..388232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2460.t1Ggra2460.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 387835..388232 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2460.t1.stop1Ggra2460.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 387835..387837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2460.t1.CDS1Ggra2460.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 387835..387847 -
Ggra2460.t1.CDS2Ggra2460.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 387919..388232 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2460.t1.exon1Ggra2460.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 387835..387847 -
Ggra2460.t1.exon2Ggra2460.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 387919..388232 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2460.t1.intron1Ggra2460.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 387848..387918 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2460.t1.start1Ggra2460.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 388230..388232 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2460.t1 ID=Ggra2460.t1|Name=Ggra2460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=109bp
MTPHRQPPIGKAPFKSGVSLTRSVAANRFNSRKRSRELANENTANEHGMM
ITNAEEEYFDDDMASGEEEDVLPDLVEAKVKTQTSRAVSFIPFYAHLGGD
DLDDDNLE*
back to top

spliced messenger RNA

>Ggra2460.t1 ID=Ggra2460.t1|Name=Ggra2460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=327bp|location=Sequence derived from alignment at tig00000005_pilon:387835..388232- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCCCACAGGCAGCCACCGATTGGAAAAGCTCCTTTTAAGTCGGG
AGTTTCGCTCACACGAAGTGTTGCGGCTAACCGTTTCAATTCGCGTAAAC
GAAGCCGAGAGCTTGCAAACGAAAACACCGCGAACGAACACGGAATGATG
ATTACTAACGCCGAAGAAGAATACTTCGATGACGATATGGCTTCCGGTGA
AGAAGAGGACGTCCTTCCGGATCTCGTTGAAGCGAAAGTCAAAACCCAAA
CTTCTCGCGCTGTATCGTTCATTCCGTTTTACGCTCATCTCGGTGGAGAT
GATCTTGACGATGATAACCTGGAGTGA
back to top

protein sequence of Ggra2460.t1

>Ggra2460.t1 ID=Ggra2460.t1|Name=Ggra2460.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=109bp
MTPHRQPPIGKAPFKSGVSLTRSVAANRFNSRKRSRELANENTANEHGMM
ITNAEEEYFDDDMASGEEEDVLPDLVEAKVKTQTSRAVSFIPFYAHLGGD
DLDDDNLE*
back to top

mRNA from alignment at tig00000005_pilon:387835..388232-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2460.t1 ID=Ggra2460.t1|Name=Ggra2460.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp|location=Sequence derived from alignment at tig00000005_pilon:387835..388232- (Gracilaria gracilis GNS1m male)
ATGACGCCCCACAGGCAGCCACCGATTGGAAAAGCTCCTTTTAAGTCGGG
AGTTTCGCTCACACGAAGTGTTGCGGCTAACCGTTTCAATTCGCGTAAAC
GAAGCCGAGAGCTTGCAAACGAAAACACCGCGAACGAACACGGAATGATG
ATTACTAACGCCGAAGAAGAATACTTCGATGACGATATGGCTTCCGGTGA
AGAAGAGGACGTCCTTCCGGATCTCGTTGAAGCGAAAGTCAAAACCCAAA
CTTCTCGCGCTGTATCGTTCATTCCGTTTTACGCTCATCTCGGTGGAGAT
GATCTTGACGATGAGTACGTTACCACAAGCTTTATACTTTTTTGAGTATC
TTCAAAAACTAACGAGCGAAAACCCTCTAATACAGTAACCTGGAGTGA
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:387835..388232-

>Ggra2460.t1 ID=Ggra2460.t1|Name=Ggra2460.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=327bp|location=Sequence derived from alignment at tig00000005_pilon:387835..388232- (Gracilaria gracilis GNS1m male)
ATGACGCCCCACAGGCAGCCACCGATTGGAAAAGCTCCTTTTAAGTCGGG
AGTTTCGCTCACACGAAGTGTTGCGGCTAACCGTTTCAATTCGCGTAAAC
GAAGCCGAGAGCTTGCAAACGAAAACACCGCGAACGAACACGGAATGATG
ATTACTAACGCCGAAGAAGAATACTTCGATGACGATATGGCTTCCGGTGA
AGAAGAGGACGTCCTTCCGGATCTCGTTGAAGCGAAAGTCAAAACCCAAA
CTTCTCGCGCTGTATCGTTCATTCCGTTTTACGCTCATCTCGGTGGAGAT
GATCTTGACGATGATAACCTGGAGTGA
back to top