Ggra2455.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2455.t1
Unique NameGgra2455.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:375033..376688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708846.1
Preferred nameATP5A1
PFAMsATP-synt_ab,ATP-synt_ab_C,ATP-synt_ab_N
Max annot lvl2759|Eukaryota
KEGG koko:K02132
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000166,GO:0000275,GO:0001936,GO:0001937,GO:0003674,GO:0003824,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005754,GO:0005759,GO:0005886,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008144,GO:0008150,GO:0008152,GO:0008285,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009295,GO:0009987,GO:0010594,GO:0010595,GO:0010632,GO:0010634,GO:0010876,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0019866,GO:0019915,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0022900,GO:0030334,GO:0030335,GO:0030554,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032991,GO:0033036,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0040007,GO:0040012,GO:0040017,GO:0042127,GO:0042287,GO:0042288,GO:0042407,GO:0042623,GO:0042625,GO:0042626,GO:0042645,GO:0042776,GO:0043167,GO:0043168,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043492,GO:0043531,GO:0043532,GO:0043535,GO:0043536,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044769,GO:0045121,GO:0045259,GO:0045261,GO:0045267,GO:0046034,GO:0046390,GO:0046483,GO:0046907,GO:0046933,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050678,GO:0050680,GO:0050789,GO:0050790,GO:0050794,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051338,GO:0051641,GO:0051649,GO:0055085,GO:0055086,GO:0055114,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0097159,GO:0097367,GO:0098589,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098805,GO:0098857,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902600,GO:1902769,GO:1990542,GO:2000145,GO:2000147
Evalue1.01e-286
EggNOG OGsCOG0056@1|root,KOG1353@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BiGG ReactioniMM904.YBL099W,iND750.YBL099W
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2455Ggra2455Gracilaria gracilis GNS1m malegenetig00000005_pilon 375033..376688 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2455.t1.start1Ggra2455.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 375033..375035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2455.t1.CDS1Ggra2455.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 375033..376688 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2455.t1.exon1Ggra2455.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 375033..376688 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2455.t1.stop1Ggra2455.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 376686..376688 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2455.t1Ggra2455.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 375033..376688 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2455.t1 ID=Ggra2455.t1|Name=Ggra2455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp
MSPALMRSVLAGVRAATHVGRPPVGFRAVPIAAMRTSAPTAAAMDPAEVS
SIIEDRIINYQQKIELDEVGRVLSIGDGIARVYGLNNCKAGEMVEFESGL
KGMALNLEVGNCGIVVFGNDREISEGQTCRRTGAIVDVPVGEGMLGRVVD
ALGNPIDGKGPITNVTRERVEVKAPGIMPRMGVHEPMQTGLKAVDALVPI
GRGQRELIIGDRQTGKTAVALDTILNQKGNFDSGDVEKQLYCVYVAVGQK
RSTVAQLAKTLEEAGALKYSIIVAATASDAAPLQFLAPYSGCAIGEYFRD
NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDIFYLHSRLLERA
AKMNKDVGGGSLTALPIIETQAGDVSAYVPTNVISITDGQVFLETELFYK
GQRPAINVGLSVSRVGSAAQMKAMKQVAGSMKLELAQHREVAAFAQFGSD
LDASTQQMLNRGDRLNELLKQDQFVPMPPEEQVVTLYAGVRGFLDKMPVS
KIKEFESAYLKYMRANHSGLLSTIRKEGSVSDSTDGALKDALTTFLETFE
I*
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spliced messenger RNA

>Ggra2455.t1 ID=Ggra2455.t1|Name=Ggra2455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000005_pilon:375033..376688+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGGCTCTCATGCGCAGCGTCCTGGCCGGTGTGCGCGCCGCTAC
GCACGTCGGTCGGCCGCCCGTTGGATTCCGTGCCGTACCGATCGCCGCTA
TGCGCACCTCCGCGCCCACGGCCGCCGCCATGGATCCGGCCGAAGTTTCT
TCCATCATTGAAGATCGAATCATCAACTATCAACAGAAGATCGAGTTGGA
TGAGGTCGGCAGAGTCCTCTCCATCGGTGATGGTATCGCGCGTGTCTACG
GCCTCAACAATTGCAAGGCCGGCGAAATGGTTGAGTTCGAGTCCGGTCTC
AAGGGTATGGCCCTCAACCTTGAGGTTGGAAATTGTGGTATTGTCGTCTT
CGGTAACGATCGCGAAATCTCCGAGGGTCAGACTTGCCGTCGTACCGGAG
CCATTGTCGATGTACCCGTCGGCGAAGGCATGCTCGGTCGCGTCGTCGAC
GCTCTTGGAAACCCAATTGACGGCAAGGGTCCCATCACCAACGTCACTCG
TGAACGTGTAGAGGTCAAGGCTCCGGGTATCATGCCGCGCATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCCGTAGATGCCCTCGTGCCGATC
GGCCGTGGTCAGCGTGAACTTATCATTGGTGATCGTCAGACCGGAAAGAC
TGCAGTCGCTCTGGACACCATACTCAACCAGAAGGGCAACTTCGACAGTG
GCGATGTCGAGAAGCAGTTGTACTGCGTCTATGTCGCCGTCGGTCAGAAG
CGATCTACCGTTGCTCAGCTCGCTAAGACTCTCGAGGAAGCGGGAGCCCT
CAAGTACTCAATTATTGTTGCCGCAACTGCATCCGATGCTGCCCCGCTTC
AGTTCCTTGCGCCGTACTCTGGGTGTGCTATTGGCGAGTATTTCCGCGAC
AATGGCAAGCATGCGCTCATCATCTACGACGATCTGTCTAAGCAAGCCGT
GGCCTATCGACAGATGTCTCTGCTTCTTCGCCGACCTCCAGGGCGTGAGG
CCTATCCTGGAGACATTTTCTACCTTCACTCTCGTTTGCTTGAACGAGCT
GCCAAGATGAACAAGGATGTTGGTGGTGGATCTCTCACCGCCCTCCCGAT
CATTGAGACCCAGGCTGGTGATGTGTCTGCCTATGTGCCTACCAATGTGA
TTTCAATCACGGATGGTCAAGTGTTCTTGGAAACTGAACTCTTCTACAAG
GGCCAGCGACCGGCTATTAACGTCGGTCTCTCTGTGTCTCGAGTGGGTTC
TGCCGCTCAGATGAAGGCTATGAAGCAAGTGGCCGGTTCAATGAAGTTGG
AGCTGGCGCAGCACAGAGAAGTTGCTGCTTTCGCACAATTTGGTTCAGAT
CTTGATGCTTCCACCCAACAGATGCTTAACCGCGGTGATCGTTTGAATGA
GCTGTTGAAACAAGACCAGTTCGTTCCGATGCCGCCTGAGGAGCAAGTTG
TCACCCTGTATGCGGGTGTACGTGGTTTCCTCGACAAAATGCCGGTCAGC
AAGATCAAGGAATTCGAGTCAGCCTACTTGAAGTACATGCGTGCTAATCA
TTCTGGACTACTTTCTACGATCAGAAAGGAAGGAAGTGTGTCTGACTCTA
CAGATGGTGCGTTGAAGGATGCGCTCACCACGTTTTTGGAGACATTTGAA
ATTTAG
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protein sequence of Ggra2455.t1

>Ggra2455.t1 ID=Ggra2455.t1|Name=Ggra2455.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=552bp
MSPALMRSVLAGVRAATHVGRPPVGFRAVPIAAMRTSAPTAAAMDPAEVS
SIIEDRIINYQQKIELDEVGRVLSIGDGIARVYGLNNCKAGEMVEFESGL
KGMALNLEVGNCGIVVFGNDREISEGQTCRRTGAIVDVPVGEGMLGRVVD
ALGNPIDGKGPITNVTRERVEVKAPGIMPRMGVHEPMQTGLKAVDALVPI
GRGQRELIIGDRQTGKTAVALDTILNQKGNFDSGDVEKQLYCVYVAVGQK
RSTVAQLAKTLEEAGALKYSIIVAATASDAAPLQFLAPYSGCAIGEYFRD
NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDIFYLHSRLLERA
AKMNKDVGGGSLTALPIIETQAGDVSAYVPTNVISITDGQVFLETELFYK
GQRPAINVGLSVSRVGSAAQMKAMKQVAGSMKLELAQHREVAAFAQFGSD
LDASTQQMLNRGDRLNELLKQDQFVPMPPEEQVVTLYAGVRGFLDKMPVS
KIKEFESAYLKYMRANHSGLLSTIRKEGSVSDSTDGALKDALTTFLETFE
I*
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mRNA from alignment at tig00000005_pilon:375033..376688+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2455.t1 ID=Ggra2455.t1|Name=Ggra2455.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000005_pilon:375033..376688+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGGCTCTCATGCGCAGCGTCCTGGCCGGTGTGCGCGCCGCTAC
GCACGTCGGTCGGCCGCCCGTTGGATTCCGTGCCGTACCGATCGCCGCTA
TGCGCACCTCCGCGCCCACGGCCGCCGCCATGGATCCGGCCGAAGTTTCT
TCCATCATTGAAGATCGAATCATCAACTATCAACAGAAGATCGAGTTGGA
TGAGGTCGGCAGAGTCCTCTCCATCGGTGATGGTATCGCGCGTGTCTACG
GCCTCAACAATTGCAAGGCCGGCGAAATGGTTGAGTTCGAGTCCGGTCTC
AAGGGTATGGCCCTCAACCTTGAGGTTGGAAATTGTGGTATTGTCGTCTT
CGGTAACGATCGCGAAATCTCCGAGGGTCAGACTTGCCGTCGTACCGGAG
CCATTGTCGATGTACCCGTCGGCGAAGGCATGCTCGGTCGCGTCGTCGAC
GCTCTTGGAAACCCAATTGACGGCAAGGGTCCCATCACCAACGTCACTCG
TGAACGTGTAGAGGTCAAGGCTCCGGGTATCATGCCGCGCATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCCGTAGATGCCCTCGTGCCGATC
GGCCGTGGTCAGCGTGAACTTATCATTGGTGATCGTCAGACCGGAAAGAC
TGCAGTCGCTCTGGACACCATACTCAACCAGAAGGGCAACTTCGACAGTG
GCGATGTCGAGAAGCAGTTGTACTGCGTCTATGTCGCCGTCGGTCAGAAG
CGATCTACCGTTGCTCAGCTCGCTAAGACTCTCGAGGAAGCGGGAGCCCT
CAAGTACTCAATTATTGTTGCCGCAACTGCATCCGATGCTGCCCCGCTTC
AGTTCCTTGCGCCGTACTCTGGGTGTGCTATTGGCGAGTATTTCCGCGAC
AATGGCAAGCATGCGCTCATCATCTACGACGATCTGTCTAAGCAAGCCGT
GGCCTATCGACAGATGTCTCTGCTTCTTCGCCGACCTCCAGGGCGTGAGG
CCTATCCTGGAGACATTTTCTACCTTCACTCTCGTTTGCTTGAACGAGCT
GCCAAGATGAACAAGGATGTTGGTGGTGGATCTCTCACCGCCCTCCCGAT
CATTGAGACCCAGGCTGGTGATGTGTCTGCCTATGTGCCTACCAATGTGA
TTTCAATCACGGATGGTCAAGTGTTCTTGGAAACTGAACTCTTCTACAAG
GGCCAGCGACCGGCTATTAACGTCGGTCTCTCTGTGTCTCGAGTGGGTTC
TGCCGCTCAGATGAAGGCTATGAAGCAAGTGGCCGGTTCAATGAAGTTGG
AGCTGGCGCAGCACAGAGAAGTTGCTGCTTTCGCACAATTTGGTTCAGAT
CTTGATGCTTCCACCCAACAGATGCTTAACCGCGGTGATCGTTTGAATGA
GCTGTTGAAACAAGACCAGTTCGTTCCGATGCCGCCTGAGGAGCAAGTTG
TCACCCTGTATGCGGGTGTACGTGGTTTCCTCGACAAAATGCCGGTCAGC
AAGATCAAGGAATTCGAGTCAGCCTACTTGAAGTACATGCGTGCTAATCA
TTCTGGACTACTTTCTACGATCAGAAAGGAAGGAAGTGTGTCTGACTCTA
CAGATGGTGCGTTGAAGGATGCGCTCACCACGTTTTTGGAGACATTTGAA
ATTTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:375033..376688+

>Ggra2455.t1 ID=Ggra2455.t1|Name=Ggra2455.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00000005_pilon:375033..376688+ (Gracilaria gracilis GNS1m male)
ATGTCTCCGGCTCTCATGCGCAGCGTCCTGGCCGGTGTGCGCGCCGCTAC
GCACGTCGGTCGGCCGCCCGTTGGATTCCGTGCCGTACCGATCGCCGCTA
TGCGCACCTCCGCGCCCACGGCCGCCGCCATGGATCCGGCCGAAGTTTCT
TCCATCATTGAAGATCGAATCATCAACTATCAACAGAAGATCGAGTTGGA
TGAGGTCGGCAGAGTCCTCTCCATCGGTGATGGTATCGCGCGTGTCTACG
GCCTCAACAATTGCAAGGCCGGCGAAATGGTTGAGTTCGAGTCCGGTCTC
AAGGGTATGGCCCTCAACCTTGAGGTTGGAAATTGTGGTATTGTCGTCTT
CGGTAACGATCGCGAAATCTCCGAGGGTCAGACTTGCCGTCGTACCGGAG
CCATTGTCGATGTACCCGTCGGCGAAGGCATGCTCGGTCGCGTCGTCGAC
GCTCTTGGAAACCCAATTGACGGCAAGGGTCCCATCACCAACGTCACTCG
TGAACGTGTAGAGGTCAAGGCTCCGGGTATCATGCCGCGCATGGGTGTCC
ACGAGCCCATGCAGACCGGTCTCAAGGCCGTAGATGCCCTCGTGCCGATC
GGCCGTGGTCAGCGTGAACTTATCATTGGTGATCGTCAGACCGGAAAGAC
TGCAGTCGCTCTGGACACCATACTCAACCAGAAGGGCAACTTCGACAGTG
GCGATGTCGAGAAGCAGTTGTACTGCGTCTATGTCGCCGTCGGTCAGAAG
CGATCTACCGTTGCTCAGCTCGCTAAGACTCTCGAGGAAGCGGGAGCCCT
CAAGTACTCAATTATTGTTGCCGCAACTGCATCCGATGCTGCCCCGCTTC
AGTTCCTTGCGCCGTACTCTGGGTGTGCTATTGGCGAGTATTTCCGCGAC
AATGGCAAGCATGCGCTCATCATCTACGACGATCTGTCTAAGCAAGCCGT
GGCCTATCGACAGATGTCTCTGCTTCTTCGCCGACCTCCAGGGCGTGAGG
CCTATCCTGGAGACATTTTCTACCTTCACTCTCGTTTGCTTGAACGAGCT
GCCAAGATGAACAAGGATGTTGGTGGTGGATCTCTCACCGCCCTCCCGAT
CATTGAGACCCAGGCTGGTGATGTGTCTGCCTATGTGCCTACCAATGTGA
TTTCAATCACGGATGGTCAAGTGTTCTTGGAAACTGAACTCTTCTACAAG
GGCCAGCGACCGGCTATTAACGTCGGTCTCTCTGTGTCTCGAGTGGGTTC
TGCCGCTCAGATGAAGGCTATGAAGCAAGTGGCCGGTTCAATGAAGTTGG
AGCTGGCGCAGCACAGAGAAGTTGCTGCTTTCGCACAATTTGGTTCAGAT
CTTGATGCTTCCACCCAACAGATGCTTAACCGCGGTGATCGTTTGAATGA
GCTGTTGAAACAAGACCAGTTCGTTCCGATGCCGCCTGAGGAGCAAGTTG
TCACCCTGTATGCGGGTGTACGTGGTTTCCTCGACAAAATGCCGGTCAGC
AAGATCAAGGAATTCGAGTCAGCCTACTTGAAGTACATGCGTGCTAATCA
TTCTGGACTACTTTCTACGATCAGAAAGGAAGGAAGTGTGTCTGACTCTA
CAGATGGTGCGTTGAAGGATGCGCTCACCACGTTTTTGGAGACATTTGAA
ATTTAG
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