Ggra2453.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2453.t1
Unique Name	Ggra2453.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	506

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:366898..368415 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706629.1
PFAMs	ATP-grasp_4
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00064,RC00090
KEGG ko	ko:K14755
KEGG Reaction	R00910,R00912,R01164,R01991,R03286
KEGG Pathway	ko00330,ko00340,ko00410,map00330,map00340,map00410
Evalue	3.33e-172
EggNOG OGs	COG0439@1\|root,2RN4Y@2759\|Eukaryota
EC	6.3.2.11
Description	ATP-grasp domain
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2453	Ggra2453	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 366898..368415 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2453.t1.stop1	Ggra2453.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 366898..366900 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2453.t1.CDS1	Ggra2453.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 366898..368415 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2453.t1.exon1	Ggra2453.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 366898..368415 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2453.t1.start1	Ggra2453.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 368413..368415 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2453.t1	Ggra2453.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 366898..368415 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:366898..368415-
coding sequence from alignment at tig00000005_pilon:366898..368415-

mRNA sequence

>Ggra2453.t1 ID=Ggra2453.t1|Name=Ggra2453.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=506bp
MQQPCASVLDSCKENKQRLHPVPVTLTPLSAEQLTGIPLSYHDLPTIPGH
LFTLSSPATQILRRKLMRGSNILVVQGGYLAKKFIYDRLMALGVNVYIMD
QPCSVWNDVAQRGGISRFIPMDFTDYETAFERSMDLLIELGLKHRFHAVT
TYYEDSVLLAARIATALGLETNSVHACENARNKRKTRQVLADKGLPVPRF
RRITCEQDIESACEYVGFPLVLKPVLGAASMGVTRIDGTEQAISTYRKLL
PTFDVKRDSIWAQGTEMMIEEYYDGDEFDVDMLLSQGEVVYAKVSDNWAC
LEPWFKETGTNCPSCYDEVKQGEIIKLATDCTLALGFHNGCFHVECKYTS
RGARLIEVNARMGGVAVRDANLLAWGVDLVEQHCMSALGMGIKPTAHKEP
LRFMAECAINAPYSGTMCEDNWLRFARDHPLVWKMSYLKKKGDVVVGPED
GLPDMIAEIIVVSLKSVREGLEAMKAIVEGVKVPIRADASKKRPLFMATH
AHPFC*

spliced messenger RNA

>Ggra2453.t1 ID=Ggra2453.t1|Name=Ggra2453.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000005_pilon:366898..368415- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACAGCCATGCGCTTCTGTGCTTGACAGCTGCAAAGAAAACAAACA
AAGGCTACATCCAGTGCCAGTCACTTTAACGCCGCTTTCTGCTGAGCAGC
TCACCGGTATACCTCTCTCATATCATGATCTTCCTACGATCCCAGGACAC
TTGTTCACACTTTCATCGCCGGCAACTCAAATTCTTCGTCGAAAACTCAT
GCGCGGATCAAACATTCTCGTGGTACAAGGAGGATATTTGGCGAAGAAAT
TCATCTATGACCGTCTCATGGCTCTTGGTGTAAATGTGTACATCATGGAT
CAACCGTGCTCTGTATGGAACGATGTCGCCCAACGAGGAGGTATCTCACG
GTTCATTCCGATGGATTTCACTGATTATGAGACTGCATTTGAACGATCAA
TGGATCTGTTGATTGAATTGGGGTTGAAACATCGTTTCCATGCTGTTACT
ACGTACTATGAAGATTCTGTTCTGCTCGCAGCACGCATTGCTACGGCGTT
GGGATTGGAAACGAATTCGGTTCACGCGTGTGAGAACGCTCGCAACAAAC
GCAAAACGAGACAAGTTTTGGCAGACAAGGGACTTCCCGTACCGCGATTT
AGGCGTATCACGTGTGAGCAAGATATCGAAAGTGCATGTGAGTATGTAGG
ATTTCCACTTGTTCTCAAACCTGTGCTTGGTGCAGCTTCGATGGGCGTCA
CTCGAATCGATGGCACGGAACAGGCCATAAGTACGTATAGAAAGCTGCTG
CCAACGTTTGATGTTAAGCGAGACAGCATCTGGGCACAAGGTACTGAGAT
GATGATCGAAGAGTATTACGACGGTGATGAGTTCGATGTGGACATGTTGC
TCTCCCAAGGCGAGGTTGTCTATGCCAAGGTTTCTGACAACTGGGCATGC
TTAGAACCGTGGTTCAAGGAGACGGGAACCAATTGCCCGTCCTGTTATGA
TGAGGTTAAACAAGGAGAAATTATCAAGCTTGCAACGGATTGTACGTTAG
CTCTTGGCTTTCATAACGGTTGCTTTCACGTGGAGTGCAAGTATACGAGT
CGCGGTGCTCGCTTGATCGAGGTGAACGCGCGTATGGGAGGTGTGGCGGT
ACGCGACGCAAACCTGTTGGCGTGGGGCGTAGATCTTGTTGAGCAGCACT
GCATGAGCGCGTTGGGAATGGGCATCAAACCAACGGCGCACAAAGAGCCG
CTGCGGTTCATGGCGGAATGCGCCATTAACGCTCCCTATTCAGGCACGAT
GTGCGAGGACAATTGGTTGCGGTTTGCCCGTGACCATCCGTTGGTGTGGA
AGATGAGCTATCTAAAGAAGAAGGGGGACGTGGTTGTTGGGCCAGAAGAC
GGGCTTCCTGACATGATTGCAGAGATCATTGTGGTGAGCCTGAAGAGCGT
CAGAGAAGGGCTGGAGGCGATGAAGGCGATTGTGGAGGGAGTGAAGGTGC
CGATACGAGCGGATGCGAGCAAGAAGCGCCCTCTGTTCATGGCGACGCAT
GCGCATCCGTTCTGTTGA

protein sequence of Ggra2453.t1

>Ggra2453.t1 ID=Ggra2453.t1|Name=Ggra2453.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MQQPCASVLDSCKENKQRLHPVPVTLTPLSAEQLTGIPLSYHDLPTIPGH
LFTLSSPATQILRRKLMRGSNILVVQGGYLAKKFIYDRLMALGVNVYIMD
QPCSVWNDVAQRGGISRFIPMDFTDYETAFERSMDLLIELGLKHRFHAVT
TYYEDSVLLAARIATALGLETNSVHACENARNKRKTRQVLADKGLPVPRF
RRITCEQDIESACEYVGFPLVLKPVLGAASMGVTRIDGTEQAISTYRKLL
PTFDVKRDSIWAQGTEMMIEEYYDGDEFDVDMLLSQGEVVYAKVSDNWAC
LEPWFKETGTNCPSCYDEVKQGEIIKLATDCTLALGFHNGCFHVECKYTS
RGARLIEVNARMGGVAVRDANLLAWGVDLVEQHCMSALGMGIKPTAHKEP
LRFMAECAINAPYSGTMCEDNWLRFARDHPLVWKMSYLKKKGDVVVGPED
GLPDMIAEIIVVSLKSVREGLEAMKAIVEGVKVPIRADASKKRPLFMATH
AHPFC*

mRNA from alignment at tig00000005_pilon:366898..368415-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2453.t1 ID=Ggra2453.t1|Name=Ggra2453.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000005_pilon:366898..368415- (Gracilaria gracilis GNS1m male)
ATGCAACAGCCATGCGCTTCTGTGCTTGACAGCTGCAAAGAAAACAAACA
AAGGCTACATCCAGTGCCAGTCACTTTAACGCCGCTTTCTGCTGAGCAGC
TCACCGGTATACCTCTCTCATATCATGATCTTCCTACGATCCCAGGACAC
TTGTTCACACTTTCATCGCCGGCAACTCAAATTCTTCGTCGAAAACTCAT
GCGCGGATCAAACATTCTCGTGGTACAAGGAGGATATTTGGCGAAGAAAT
TCATCTATGACCGTCTCATGGCTCTTGGTGTAAATGTGTACATCATGGAT
CAACCGTGCTCTGTATGGAACGATGTCGCCCAACGAGGAGGTATCTCACG
GTTCATTCCGATGGATTTCACTGATTATGAGACTGCATTTGAACGATCAA
TGGATCTGTTGATTGAATTGGGGTTGAAACATCGTTTCCATGCTGTTACT
ACGTACTATGAAGATTCTGTTCTGCTCGCAGCACGCATTGCTACGGCGTT
GGGATTGGAAACGAATTCGGTTCACGCGTGTGAGAACGCTCGCAACAAAC
GCAAAACGAGACAAGTTTTGGCAGACAAGGGACTTCCCGTACCGCGATTT
AGGCGTATCACGTGTGAGCAAGATATCGAAAGTGCATGTGAGTATGTAGG
ATTTCCACTTGTTCTCAAACCTGTGCTTGGTGCAGCTTCGATGGGCGTCA
CTCGAATCGATGGCACGGAACAGGCCATAAGTACGTATAGAAAGCTGCTG
CCAACGTTTGATGTTAAGCGAGACAGCATCTGGGCACAAGGTACTGAGAT
GATGATCGAAGAGTATTACGACGGTGATGAGTTCGATGTGGACATGTTGC
TCTCCCAAGGCGAGGTTGTCTATGCCAAGGTTTCTGACAACTGGGCATGC
TTAGAACCGTGGTTCAAGGAGACGGGAACCAATTGCCCGTCCTGTTATGA
TGAGGTTAAACAAGGAGAAATTATCAAGCTTGCAACGGATTGTACGTTAG
CTCTTGGCTTTCATAACGGTTGCTTTCACGTGGAGTGCAAGTATACGAGT
CGCGGTGCTCGCTTGATCGAGGTGAACGCGCGTATGGGAGGTGTGGCGGT
ACGCGACGCAAACCTGTTGGCGTGGGGCGTAGATCTTGTTGAGCAGCACT
GCATGAGCGCGTTGGGAATGGGCATCAAACCAACGGCGCACAAAGAGCCG
CTGCGGTTCATGGCGGAATGCGCCATTAACGCTCCCTATTCAGGCACGAT
GTGCGAGGACAATTGGTTGCGGTTTGCCCGTGACCATCCGTTGGTGTGGA
AGATGAGCTATCTAAAGAAGAAGGGGGACGTGGTTGTTGGGCCAGAAGAC
GGGCTTCCTGACATGATTGCAGAGATCATTGTGGTGAGCCTGAAGAGCGT
CAGAGAAGGGCTGGAGGCGATGAAGGCGATTGTGGAGGGAGTGAAGGTGC
CGATACGAGCGGATGCGAGCAAGAAGCGCCCTCTGTTCATGGCGACGCAT
GCGCATCCGTTCTGTTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:366898..368415-

>Ggra2453.t1 ID=Ggra2453.t1|Name=Ggra2453.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00000005_pilon:366898..368415- (Gracilaria gracilis GNS1m male)
ATGCAACAGCCATGCGCTTCTGTGCTTGACAGCTGCAAAGAAAACAAACA
AAGGCTACATCCAGTGCCAGTCACTTTAACGCCGCTTTCTGCTGAGCAGC
TCACCGGTATACCTCTCTCATATCATGATCTTCCTACGATCCCAGGACAC
TTGTTCACACTTTCATCGCCGGCAACTCAAATTCTTCGTCGAAAACTCAT
GCGCGGATCAAACATTCTCGTGGTACAAGGAGGATATTTGGCGAAGAAAT
TCATCTATGACCGTCTCATGGCTCTTGGTGTAAATGTGTACATCATGGAT
CAACCGTGCTCTGTATGGAACGATGTCGCCCAACGAGGAGGTATCTCACG
GTTCATTCCGATGGATTTCACTGATTATGAGACTGCATTTGAACGATCAA
TGGATCTGTTGATTGAATTGGGGTTGAAACATCGTTTCCATGCTGTTACT
ACGTACTATGAAGATTCTGTTCTGCTCGCAGCACGCATTGCTACGGCGTT
GGGATTGGAAACGAATTCGGTTCACGCGTGTGAGAACGCTCGCAACAAAC
GCAAAACGAGACAAGTTTTGGCAGACAAGGGACTTCCCGTACCGCGATTT
AGGCGTATCACGTGTGAGCAAGATATCGAAAGTGCATGTGAGTATGTAGG
ATTTCCACTTGTTCTCAAACCTGTGCTTGGTGCAGCTTCGATGGGCGTCA
CTCGAATCGATGGCACGGAACAGGCCATAAGTACGTATAGAAAGCTGCTG
CCAACGTTTGATGTTAAGCGAGACAGCATCTGGGCACAAGGTACTGAGAT
GATGATCGAAGAGTATTACGACGGTGATGAGTTCGATGTGGACATGTTGC
TCTCCCAAGGCGAGGTTGTCTATGCCAAGGTTTCTGACAACTGGGCATGC
TTAGAACCGTGGTTCAAGGAGACGGGAACCAATTGCCCGTCCTGTTATGA
TGAGGTTAAACAAGGAGAAATTATCAAGCTTGCAACGGATTGTACGTTAG
CTCTTGGCTTTCATAACGGTTGCTTTCACGTGGAGTGCAAGTATACGAGT
CGCGGTGCTCGCTTGATCGAGGTGAACGCGCGTATGGGAGGTGTGGCGGT
ACGCGACGCAAACCTGTTGGCGTGGGGCGTAGATCTTGTTGAGCAGCACT
GCATGAGCGCGTTGGGAATGGGCATCAAACCAACGGCGCACAAAGAGCCG
CTGCGGTTCATGGCGGAATGCGCCATTAACGCTCCCTATTCAGGCACGAT
GTGCGAGGACAATTGGTTGCGGTTTGCCCGTGACCATCCGTTGGTGTGGA
AGATGAGCTATCTAAAGAAGAAGGGGGACGTGGTTGTTGGGCCAGAAGAC
GGGCTTCCTGACATGATTGCAGAGATCATTGTGGTGAGCCTGAAGAGCGT
CAGAGAAGGGCTGGAGGCGATGAAGGCGATTGTGGAGGGAGTGAAGGTGC
CGATACGAGCGGATGCGAGCAAGAAGCGCCCTCTGTTCATGGCGACGCAT
GCGCATCCGTTCTGTTGA