Ggra2452.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2452.t1
Unique NameGgra2452.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:361702..362397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM079CT
PFAMsGrp1_Fun34_YaaH
Max annot lvl2759|Eukaryota
KEGG koko:K07034
Evalue1.33e-18
EggNOG OGsCOG1584@1|root,2S8RE@2759|Eukaryota
DescriptionGPR1/FUN34/yaaH family
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2452Ggra2452Gracilaria gracilis GNS1m malegenetig00000005_pilon 361702..362397 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2452.t1.start1Ggra2452.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 361702..361704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2452.t1.CDS1Ggra2452.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 361702..362397 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2452.t1.exon1Ggra2452.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 361702..362397 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2452.t1.stop1Ggra2452.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 362395..362397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2452.t1Ggra2452.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 361702..362397 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2452.t1 ID=Ggra2452.t1|Name=Ggra2452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=232bp
MSTISSSPRPSYEKLLPSIAKRLDSLEKALLPLPVTTKSFRPIANPAPLG
LLGFAAVSILAAIPKLEHRATDISPLIFVVAFFLGGMGQVIAALLEYTCN
HLHAASTFALFGLHWSAQAILIASKSLSLKDFTPIHAHDAAVYYTILTVA
TVMLTIPSFRMNRVLTVTLFFVIFAFGFDVPAAFGHHWAEVGSGVAAIGA
SILAMYMAFVEFVNEAWDRQLLSVFPVKSAN*
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spliced messenger RNA

>Ggra2452.t1 ID=Ggra2452.t1|Name=Ggra2452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000005_pilon:361702..362397+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACCATCTCAAGCTCCCCTCGTCCCTCGTATGAAAAACTTTTGCC
TTCAATAGCAAAGCGTCTCGACTCTTTGGAAAAGGCACTGCTACCGCTGC
CGGTGACCACCAAGTCATTTCGACCAATCGCAAATCCAGCGCCGCTGGGT
CTGCTAGGTTTCGCCGCAGTGTCTATTCTAGCAGCCATTCCAAAGCTAGA
ACATAGAGCTACAGACATCAGCCCGCTTATTTTCGTGGTGGCTTTCTTTC
TGGGTGGCATGGGCCAGGTGATCGCCGCTCTTCTGGAATACACTTGCAAC
CATCTACATGCCGCTTCTACGTTTGCTTTGTTCGGGCTACATTGGTCAGC
TCAAGCCATCTTAATTGCGAGCAAGTCGTTGTCACTCAAGGACTTTACGC
CCATCCATGCTCATGATGCTGCTGTGTACTATACCATCCTGACGGTGGCC
ACGGTGATGCTCACAATCCCTTCTTTCCGGATGAATCGCGTTCTCACCGT
CACTTTGTTCTTTGTGATTTTTGCGTTTGGATTCGATGTGCCGGCTGCGT
TTGGGCACCACTGGGCTGAAGTGGGCTCTGGCGTGGCGGCGATTGGCGCA
TCTATTCTAGCCATGTACATGGCGTTCGTTGAGTTTGTGAACGAAGCGTG
GGACAGACAATTATTAAGTGTGTTCCCGGTGAAGAGCGCGAATTAG
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protein sequence of Ggra2452.t1

>Ggra2452.t1 ID=Ggra2452.t1|Name=Ggra2452.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MSTISSSPRPSYEKLLPSIAKRLDSLEKALLPLPVTTKSFRPIANPAPLG
LLGFAAVSILAAIPKLEHRATDISPLIFVVAFFLGGMGQVIAALLEYTCN
HLHAASTFALFGLHWSAQAILIASKSLSLKDFTPIHAHDAAVYYTILTVA
TVMLTIPSFRMNRVLTVTLFFVIFAFGFDVPAAFGHHWAEVGSGVAAIGA
SILAMYMAFVEFVNEAWDRQLLSVFPVKSAN*
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mRNA from alignment at tig00000005_pilon:361702..362397+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2452.t1 ID=Ggra2452.t1|Name=Ggra2452.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000005_pilon:361702..362397+ (Gracilaria gracilis GNS1m male)
ATGTCGACCATCTCAAGCTCCCCTCGTCCCTCGTATGAAAAACTTTTGCC
TTCAATAGCAAAGCGTCTCGACTCTTTGGAAAAGGCACTGCTACCGCTGC
CGGTGACCACCAAGTCATTTCGACCAATCGCAAATCCAGCGCCGCTGGGT
CTGCTAGGTTTCGCCGCAGTGTCTATTCTAGCAGCCATTCCAAAGCTAGA
ACATAGAGCTACAGACATCAGCCCGCTTATTTTCGTGGTGGCTTTCTTTC
TGGGTGGCATGGGCCAGGTGATCGCCGCTCTTCTGGAATACACTTGCAAC
CATCTACATGCCGCTTCTACGTTTGCTTTGTTCGGGCTACATTGGTCAGC
TCAAGCCATCTTAATTGCGAGCAAGTCGTTGTCACTCAAGGACTTTACGC
CCATCCATGCTCATGATGCTGCTGTGTACTATACCATCCTGACGGTGGCC
ACGGTGATGCTCACAATCCCTTCTTTCCGGATGAATCGCGTTCTCACCGT
CACTTTGTTCTTTGTGATTTTTGCGTTTGGATTCGATGTGCCGGCTGCGT
TTGGGCACCACTGGGCTGAAGTGGGCTCTGGCGTGGCGGCGATTGGCGCA
TCTATTCTAGCCATGTACATGGCGTTCGTTGAGTTTGTGAACGAAGCGTG
GGACAGACAATTATTAAGTGTGTTCCCGGTGAAGAGCGCGAATTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:361702..362397+

>Ggra2452.t1 ID=Ggra2452.t1|Name=Ggra2452.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000005_pilon:361702..362397+ (Gracilaria gracilis GNS1m male)
ATGTCGACCATCTCAAGCTCCCCTCGTCCCTCGTATGAAAAACTTTTGCC
TTCAATAGCAAAGCGTCTCGACTCTTTGGAAAAGGCACTGCTACCGCTGC
CGGTGACCACCAAGTCATTTCGACCAATCGCAAATCCAGCGCCGCTGGGT
CTGCTAGGTTTCGCCGCAGTGTCTATTCTAGCAGCCATTCCAAAGCTAGA
ACATAGAGCTACAGACATCAGCCCGCTTATTTTCGTGGTGGCTTTCTTTC
TGGGTGGCATGGGCCAGGTGATCGCCGCTCTTCTGGAATACACTTGCAAC
CATCTACATGCCGCTTCTACGTTTGCTTTGTTCGGGCTACATTGGTCAGC
TCAAGCCATCTTAATTGCGAGCAAGTCGTTGTCACTCAAGGACTTTACGC
CCATCCATGCTCATGATGCTGCTGTGTACTATACCATCCTGACGGTGGCC
ACGGTGATGCTCACAATCCCTTCTTTCCGGATGAATCGCGTTCTCACCGT
CACTTTGTTCTTTGTGATTTTTGCGTTTGGATTCGATGTGCCGGCTGCGT
TTGGGCACCACTGGGCTGAAGTGGGCTCTGGCGTGGCGGCGATTGGCGCA
TCTATTCTAGCCATGTACATGGCGTTCGTTGAGTTTGTGAACGAAGCGTG
GGACAGACAATTATTAAGTGTGTTCCCGGTGAAGAGCGCGAATTAG
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