Ggra2450.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2450.t1
Unique Name	Ggra2450.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	330

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:354770..355759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5722.XP_001579062.1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02218
KEGG Pathway	ko04011,ko04392,map04011,map04392
Evalue	2.74e-19
EggNOG OGs	KOG1164@1\|root,KOG1164@2759\|Eukaryota
EC	2.7.11.1
Description	protein kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2450	Ggra2450	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 354770..355759 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2450.t1.start1	Ggra2450.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 354770..354772 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2450.t1.CDS1	Ggra2450.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 354770..355759 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2450.t1.exon1	Ggra2450.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 354770..355759 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2450.t1.stop1	Ggra2450.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 355757..355759 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2450.t1	Ggra2450.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 354770..355759 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:354770..355759+
coding sequence from alignment at tig00000005_pilon:354770..355759+

mRNA sequence

>Ggra2450.t1 ID=Ggra2450.t1|Name=Ggra2450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp
MKPRSNPSHADPNSFTMLEDTIEDQDDREGTIVKHGRKKYVIHGLIDKTL
SDSVYHGSGFRGKRVVFYAERIHDHGNTLRAKYNVLNYLEKTGFAHVPKV
LFITADRKHNYLAQDKVGKSLHQLFLRRKCPFSLRAVILLTWKLVKILDY
LHSTGVAHGLLTPCKILTAASARKKEELYLVGFRYAVNFVETPNPTKHLP
IMDPVFASPTLYEVGHGTMKGDLESLFFSMVFLLTGSLPWIKNKSRAPFA
VPSAEDPVYLEKKKISPEDLCHEMPSFMSKIYDYVRSLSHLERPCYKWIK
LQFTQYFKTHQVLGEKKHEKENRQSCPKG*

spliced messenger RNA

>Ggra2450.t1 ID=Ggra2450.t1|Name=Ggra2450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000005_pilon:354770..355759+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCCCGTTCGAACCCCAGCCATGCGGATCCCAATTCCTTTACCAT
GCTGGAAGACACCATAGAAGATCAAGACGACCGAGAAGGAACGATAGTGA
AACATGGAAGAAAGAAATATGTCATACACGGATTGATTGATAAAACACTC
TCAGACTCTGTTTATCATGGATCTGGCTTCAGAGGGAAAAGGGTCGTCTT
CTATGCCGAACGAATTCACGACCATGGAAATACCCTCAGGGCTAAATACA
ACGTCTTAAACTACCTCGAGAAAACAGGTTTTGCACACGTTCCAAAAGTC
TTGTTCATCACAGCGGATCGAAAGCACAACTATCTGGCTCAGGACAAAGT
TGGGAAAAGCTTGCATCAACTTTTCCTTCGCAGGAAATGTCCGTTTTCAC
TTAGAGCTGTGATATTGCTGACCTGGAAACTCGTGAAAATATTGGACTAT
CTACATAGCACAGGTGTCGCACATGGACTTCTAACACCTTGCAAAATCCT
TACTGCTGCTTCGGCTAGAAAAAAGGAAGAATTGTATCTTGTTGGATTTC
GATATGCCGTAAACTTCGTTGAAACCCCAAATCCCACAAAGCATCTGCCA
ATTATGGACCCGGTATTCGCCTCGCCGACACTCTATGAAGTAGGACATGG
GACAATGAAAGGGGATTTGGAAAGTCTTTTCTTCTCGATGGTCTTTCTGT
TGACTGGGAGTCTTCCGTGGATTAAGAACAAGTCAAGGGCACCATTTGCC
GTGCCCAGTGCTGAAGATCCTGTTTATCTGGAGAAGAAGAAAATAAGTCC
TGAAGACCTTTGTCATGAAATGCCGAGTTTCATGTCTAAGATTTACGACT
ATGTAAGATCATTGTCACACCTTGAACGGCCATGCTATAAATGGATTAAG
CTTCAGTTTACACAATACTTCAAAACGCATCAGGTGCTGGGCGAGAAAAA
GCATGAAAAGGAAAACAGACAGAGCTGCCCGAAGGGCTGA

protein sequence of Ggra2450.t1

>Ggra2450.t1 ID=Ggra2450.t1|Name=Ggra2450.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=330bp
MKPRSNPSHADPNSFTMLEDTIEDQDDREGTIVKHGRKKYVIHGLIDKTL
SDSVYHGSGFRGKRVVFYAERIHDHGNTLRAKYNVLNYLEKTGFAHVPKV
LFITADRKHNYLAQDKVGKSLHQLFLRRKCPFSLRAVILLTWKLVKILDY
LHSTGVAHGLLTPCKILTAASARKKEELYLVGFRYAVNFVETPNPTKHLP
IMDPVFASPTLYEVGHGTMKGDLESLFFSMVFLLTGSLPWIKNKSRAPFA
VPSAEDPVYLEKKKISPEDLCHEMPSFMSKIYDYVRSLSHLERPCYKWIK
LQFTQYFKTHQVLGEKKHEKENRQSCPKG*

mRNA from alignment at tig00000005_pilon:354770..355759+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2450.t1 ID=Ggra2450.t1|Name=Ggra2450.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000005_pilon:354770..355759+ (Gracilaria gracilis GNS1m male)
ATGAAACCCCGTTCGAACCCCAGCCATGCGGATCCCAATTCCTTTACCAT
GCTGGAAGACACCATAGAAGATCAAGACGACCGAGAAGGAACGATAGTGA
AACATGGAAGAAAGAAATATGTCATACACGGATTGATTGATAAAACACTC
TCAGACTCTGTTTATCATGGATCTGGCTTCAGAGGGAAAAGGGTCGTCTT
CTATGCCGAACGAATTCACGACCATGGAAATACCCTCAGGGCTAAATACA
ACGTCTTAAACTACCTCGAGAAAACAGGTTTTGCACACGTTCCAAAAGTC
TTGTTCATCACAGCGGATCGAAAGCACAACTATCTGGCTCAGGACAAAGT
TGGGAAAAGCTTGCATCAACTTTTCCTTCGCAGGAAATGTCCGTTTTCAC
TTAGAGCTGTGATATTGCTGACCTGGAAACTCGTGAAAATATTGGACTAT
CTACATAGCACAGGTGTCGCACATGGACTTCTAACACCTTGCAAAATCCT
TACTGCTGCTTCGGCTAGAAAAAAGGAAGAATTGTATCTTGTTGGATTTC
GATATGCCGTAAACTTCGTTGAAACCCCAAATCCCACAAAGCATCTGCCA
ATTATGGACCCGGTATTCGCCTCGCCGACACTCTATGAAGTAGGACATGG
GACAATGAAAGGGGATTTGGAAAGTCTTTTCTTCTCGATGGTCTTTCTGT
TGACTGGGAGTCTTCCGTGGATTAAGAACAAGTCAAGGGCACCATTTGCC
GTGCCCAGTGCTGAAGATCCTGTTTATCTGGAGAAGAAGAAAATAAGTCC
TGAAGACCTTTGTCATGAAATGCCGAGTTTCATGTCTAAGATTTACGACT
ATGTAAGATCATTGTCACACCTTGAACGGCCATGCTATAAATGGATTAAG
CTTCAGTTTACACAATACTTCAAAACGCATCAGGTGCTGGGCGAGAAAAA
GCATGAAAAGGAAAACAGACAGAGCTGCCCGAAGGGCTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:354770..355759+

>Ggra2450.t1 ID=Ggra2450.t1|Name=Ggra2450.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000005_pilon:354770..355759+ (Gracilaria gracilis GNS1m male)
ATGAAACCCCGTTCGAACCCCAGCCATGCGGATCCCAATTCCTTTACCAT
GCTGGAAGACACCATAGAAGATCAAGACGACCGAGAAGGAACGATAGTGA
AACATGGAAGAAAGAAATATGTCATACACGGATTGATTGATAAAACACTC
TCAGACTCTGTTTATCATGGATCTGGCTTCAGAGGGAAAAGGGTCGTCTT
CTATGCCGAACGAATTCACGACCATGGAAATACCCTCAGGGCTAAATACA
ACGTCTTAAACTACCTCGAGAAAACAGGTTTTGCACACGTTCCAAAAGTC
TTGTTCATCACAGCGGATCGAAAGCACAACTATCTGGCTCAGGACAAAGT
TGGGAAAAGCTTGCATCAACTTTTCCTTCGCAGGAAATGTCCGTTTTCAC
TTAGAGCTGTGATATTGCTGACCTGGAAACTCGTGAAAATATTGGACTAT
CTACATAGCACAGGTGTCGCACATGGACTTCTAACACCTTGCAAAATCCT
TACTGCTGCTTCGGCTAGAAAAAAGGAAGAATTGTATCTTGTTGGATTTC
GATATGCCGTAAACTTCGTTGAAACCCCAAATCCCACAAAGCATCTGCCA
ATTATGGACCCGGTATTCGCCTCGCCGACACTCTATGAAGTAGGACATGG
GACAATGAAAGGGGATTTGGAAAGTCTTTTCTTCTCGATGGTCTTTCTGT
TGACTGGGAGTCTTCCGTGGATTAAGAACAAGTCAAGGGCACCATTTGCC
GTGCCCAGTGCTGAAGATCCTGTTTATCTGGAGAAGAAGAAAATAAGTCC
TGAAGACCTTTGTCATGAAATGCCGAGTTTCATGTCTAAGATTTACGACT
ATGTAAGATCATTGTCACACCTTGAACGGCCATGCTATAAATGGATTAAG
CTTCAGTTTACACAATACTTCAAAACGCATCAGGTGCTGGGCGAGAAAAA
GCATGAAAAGGAAAACAGACAGAGCTGCCCGAAGGGCTGA