Ggra2447.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2447.t1
Unique NameGgra2447.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:346888..347253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4787.PITG_04150T0
PFAMsNAM-associated
Max annot lvl2759|Eukaryota
Evalue8.34e-08
EggNOG OGs2EQRP@1|root,2STQ8@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2447Ggra2447Gracilaria gracilis GNS1m malegenetig00000005_pilon 346888..347253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2447.t1.stop1Ggra2447.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 346888..346890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2447.t1.CDS1Ggra2447.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 346888..347253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2447.t1.exon1Ggra2447.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 346888..347253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2447.t1.start1Ggra2447.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 347251..347253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2447.t1Ggra2447.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 346888..347253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2447.t1 ID=Ggra2447.t1|Name=Ggra2447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=122bp
MGSGKGWSVIETKNACRAFIAASEDSLSGAGKKREKFFGQIEIAYKLLIK
EYKKTDNKAIFFVRTDSAIAQRYKKARFECIKFEEIVMSIQAKRPTGSPT
EHDIVRAATAVYNGQANISNM*
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spliced messenger RNA

>Ggra2447.t1 ID=Ggra2447.t1|Name=Ggra2447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp|location=Sequence derived from alignment at tig00000005_pilon:346888..347253- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCCGGCAAAGGCTGGTCTGTGATTGAAACAAAGAATGCCTGTCG
CGCATTCATTGCAGCTTCTGAAGATTCTCTTTCTGGCGCGGGAAAGAAGC
GTGAAAAGTTCTTCGGACAGATTGAAATCGCATATAAGCTTCTAATTAAA
GAATACAAGAAGACCGACAACAAAGCGATATTCTTTGTACGTACTGACAG
TGCAATCGCACAAAGGTATAAGAAGGCCCGTTTTGAATGTATCAAATTCG
AAGAAATTGTCATGTCGATTCAAGCCAAGCGCCCCACTGGTTCACCAACT
GAACATGACATTGTGCGAGCAGCCACTGCTGTCTACAACGGTCAAGCAAA
CATCAGCAATATGTAG
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protein sequence of Ggra2447.t1

>Ggra2447.t1 ID=Ggra2447.t1|Name=Ggra2447.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=122bp
MGSGKGWSVIETKNACRAFIAASEDSLSGAGKKREKFFGQIEIAYKLLIK
EYKKTDNKAIFFVRTDSAIAQRYKKARFECIKFEEIVMSIQAKRPTGSPT
EHDIVRAATAVYNGQANISNM*
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mRNA from alignment at tig00000005_pilon:346888..347253-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2447.t1 ID=Ggra2447.t1|Name=Ggra2447.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp|location=Sequence derived from alignment at tig00000005_pilon:346888..347253- (Gracilaria gracilis GNS1m male)
ATGGGCTCCGGCAAAGGCTGGTCTGTGATTGAAACAAAGAATGCCTGTCG
CGCATTCATTGCAGCTTCTGAAGATTCTCTTTCTGGCGCGGGAAAGAAGC
GTGAAAAGTTCTTCGGACAGATTGAAATCGCATATAAGCTTCTAATTAAA
GAATACAAGAAGACCGACAACAAAGCGATATTCTTTGTACGTACTGACAG
TGCAATCGCACAAAGGTATAAGAAGGCCCGTTTTGAATGTATCAAATTCG
AAGAAATTGTCATGTCGATTCAAGCCAAGCGCCCCACTGGTTCACCAACT
GAACATGACATTGTGCGAGCAGCCACTGCTGTCTACAACGGTCAAGCAAA
CATCAGCAATATGTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:346888..347253-

>Ggra2447.t1 ID=Ggra2447.t1|Name=Ggra2447.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=366bp|location=Sequence derived from alignment at tig00000005_pilon:346888..347253- (Gracilaria gracilis GNS1m male)
ATGGGCTCCGGCAAAGGCTGGTCTGTGATTGAAACAAAGAATGCCTGTCG
CGCATTCATTGCAGCTTCTGAAGATTCTCTTTCTGGCGCGGGAAAGAAGC
GTGAAAAGTTCTTCGGACAGATTGAAATCGCATATAAGCTTCTAATTAAA
GAATACAAGAAGACCGACAACAAAGCGATATTCTTTGTACGTACTGACAG
TGCAATCGCACAAAGGTATAAGAAGGCCCGTTTTGAATGTATCAAATTCG
AAGAAATTGTCATGTCGATTCAAGCCAAGCGCCCCACTGGTTCACCAACT
GAACATGACATTGTGCGAGCAGCCACTGCTGTCTACAACGGTCAAGCAAA
CATCAGCAATATGTAG
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