Ggra2445.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2445.t1
Unique Name	Ggra2445.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:326964..328802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2445	Ggra2445	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 326964..328802 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2445.t1.start1	Ggra2445.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 326964..326966 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2445.t1.CDS1	Ggra2445.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 326964..328802 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2445.t1.exon1	Ggra2445.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 326964..328802 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2445.t1.stop1	Ggra2445.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 328800..328802 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2445.t1	Ggra2445.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 326964..328802 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:326964..328802+
coding sequence from alignment at tig00000005_pilon:326964..328802+

mRNA sequence

>Ggra2445.t1 ID=Ggra2445.t1|Name=Ggra2445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=613bp
MPSSRRLLQQVAQYESAIKQHNDVNAMVDLAYILLYEPTIPNDVSRAFQL
LERAIKQARHPQAMNVLAVYLHNNGNRKQRRRVIQLLEQSVRSQLNCKVL
QNLANTLYRGECGARDVPRAIQLLQRAIAISKDPQCMADLATIILKEKQV
VGDKKYALNLYKQAIQLSDDASLMNNLGVIYMDGTAHVSSCDCCAAKWFE
RAIQTADLPTTKYNYASLLVNSNRIKRDPIRATRLLEQAVKDRACEDFVI
GLADIYETCEQVLDFQRAVHLYQRAYSEYGSIIALNRLIYILAFGRDGVA
VNLSKAYELCKNYYRRTKRHNFLMIQACILWSGTPGLPRNPLRASKICSR
YLDVGCGTLALMMRCGAPGVPPDLQQVKKVSNDLVEANRLFLDALIISET
AYDCGKYQQAEQKFLAVLDIDEEQLRNDFVWLPLCLRIGNIQLPYAGDAE
HVPNGIKRFEQVHNVSTLNLASIYLERNEGAQAVRMYESLMETDIRDIAM
VNLGYVLREGLGGIERDTQRAKQLFEGCVKEYKNVFAGAFFVDMLVDGSV
LSQDAKMAGIKVWQSVTEDCLDEVERHILGQLLSRNGKLVILSCTLSDDN
CSGEATLGKGAA*

spliced messenger RNA

>Ggra2445.t1 ID=Ggra2445.t1|Name=Ggra2445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000005_pilon:326964..328802+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCTCTCGCCGCCTCCTACAACAGGTAGCCCAGTATGAAAGCGC
CATCAAGCAGCACAACGACGTCAATGCCATGGTTGATCTCGCCTACATTC
TCCTGTACGAACCCACCATACCCAACGACGTTTCTCGGGCCTTCCAATTG
CTTGAACGCGCCATCAAACAGGCCCGCCATCCGCAGGCTATGAATGTGCT
CGCCGTTTACCTGCACAACAATGGAAATCGCAAACAGCGTCGACGCGTCA
TCCAGCTTTTGGAGCAATCCGTACGAAGTCAACTCAATTGCAAGGTACTT
CAGAATCTTGCCAACACGCTCTATCGAGGTGAGTGCGGCGCCAGGGATGT
TCCTCGTGCAATCCAACTTTTGCAGCGCGCCATCGCCATTTCCAAAGATC
CTCAGTGTATGGCAGATCTCGCCACCATAATACTCAAAGAGAAGCAAGTC
GTCGGCGATAAGAAATACGCTTTGAATCTGTACAAGCAGGCTATCCAACT
TTCCGATGATGCCAGTCTCATGAACAATCTTGGCGTCATATACATGGATG
GTACTGCTCATGTCTCATCGTGCGATTGTTGTGCTGCTAAATGGTTCGAA
CGTGCCATTCAAACCGCTGATCTCCCCACCACAAAGTACAACTACGCTTC
ATTGCTTGTCAATAGCAACCGCATCAAACGAGATCCCATTCGAGCCACAC
GTCTTTTGGAACAAGCTGTGAAAGATCGAGCCTGCGAAGATTTCGTCATT
GGTCTTGCAGATATCTACGAAACATGCGAGCAAGTCCTTGATTTCCAACG
GGCTGTTCATCTGTATCAGCGAGCCTACTCTGAGTACGGCTCCATTATCG
CGTTGAATCGACTCATTTACATATTGGCATTTGGTCGTGATGGCGTTGCC
GTAAATTTGTCCAAAGCGTACGAGCTTTGTAAGAATTATTATCGACGCAC
CAAACGACACAACTTTTTGATGATTCAGGCTTGTATCTTGTGGAGTGGAA
CTCCTGGTTTACCCCGCAATCCGCTGCGAGCTTCGAAGATTTGCTCACGA
TATCTCGACGTCGGATGTGGTACCTTGGCTTTAATGATGCGCTGTGGCGC
CCCAGGTGTGCCGCCCGATCTGCAACAGGTGAAGAAGGTGTCAAATGATC
TGGTTGAAGCCAACCGTTTATTCTTGGACGCCCTAATTATCAGTGAAACT
GCCTATGATTGTGGCAAGTATCAACAAGCAGAGCAGAAGTTTCTCGCTGT
GTTGGACATTGACGAGGAGCAATTACGAAACGATTTTGTCTGGTTGCCGT
TGTGCCTCCGAATTGGAAACATTCAACTACCATATGCAGGCGACGCTGAA
CATGTGCCAAACGGTATCAAGCGCTTTGAGCAGGTGCATAATGTTAGCAC
ATTGAATCTAGCAAGCATATATCTCGAACGAAATGAGGGTGCTCAAGCTG
TGCGAATGTATGAATCACTGATGGAAACGGATATCAGAGATATTGCAATG
GTCAATCTTGGATACGTGCTCAGAGAAGGGCTTGGTGGCATTGAAAGAGA
TACACAACGTGCGAAACAGCTGTTTGAAGGTTGTGTCAAGGAGTACAAGA
ACGTGTTTGCAGGCGCCTTCTTTGTGGATATGCTGGTCGATGGAAGTGTT
TTGAGCCAAGATGCAAAGATGGCTGGTATCAAAGTTTGGCAATCTGTTAC
AGAAGATTGTCTAGATGAAGTGGAACGCCATATTCTGGGCCAATTGCTCT
CGCGGAATGGAAAACTGGTCATTTTGAGCTGTACACTCTCGGATGATAAC
TGCAGCGGAGAAGCTACCCTGGGAAAGGGAGCCGCATGA

protein sequence of Ggra2445.t1

>Ggra2445.t1 ID=Ggra2445.t1|Name=Ggra2445.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=613bp
MPSSRRLLQQVAQYESAIKQHNDVNAMVDLAYILLYEPTIPNDVSRAFQL
LERAIKQARHPQAMNVLAVYLHNNGNRKQRRRVIQLLEQSVRSQLNCKVL
QNLANTLYRGECGARDVPRAIQLLQRAIAISKDPQCMADLATIILKEKQV
VGDKKYALNLYKQAIQLSDDASLMNNLGVIYMDGTAHVSSCDCCAAKWFE
RAIQTADLPTTKYNYASLLVNSNRIKRDPIRATRLLEQAVKDRACEDFVI
GLADIYETCEQVLDFQRAVHLYQRAYSEYGSIIALNRLIYILAFGRDGVA
VNLSKAYELCKNYYRRTKRHNFLMIQACILWSGTPGLPRNPLRASKICSR
YLDVGCGTLALMMRCGAPGVPPDLQQVKKVSNDLVEANRLFLDALIISET
AYDCGKYQQAEQKFLAVLDIDEEQLRNDFVWLPLCLRIGNIQLPYAGDAE
HVPNGIKRFEQVHNVSTLNLASIYLERNEGAQAVRMYESLMETDIRDIAM
VNLGYVLREGLGGIERDTQRAKQLFEGCVKEYKNVFAGAFFVDMLVDGSV
LSQDAKMAGIKVWQSVTEDCLDEVERHILGQLLSRNGKLVILSCTLSDDN
CSGEATLGKGAA*

mRNA from alignment at tig00000005_pilon:326964..328802+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2445.t1 ID=Ggra2445.t1|Name=Ggra2445.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000005_pilon:326964..328802+ (Gracilaria gracilis GNS1m male)
ATGCCGTCCTCTCGCCGCCTCCTACAACAGGTAGCCCAGTATGAAAGCGC
CATCAAGCAGCACAACGACGTCAATGCCATGGTTGATCTCGCCTACATTC
TCCTGTACGAACCCACCATACCCAACGACGTTTCTCGGGCCTTCCAATTG
CTTGAACGCGCCATCAAACAGGCCCGCCATCCGCAGGCTATGAATGTGCT
CGCCGTTTACCTGCACAACAATGGAAATCGCAAACAGCGTCGACGCGTCA
TCCAGCTTTTGGAGCAATCCGTACGAAGTCAACTCAATTGCAAGGTACTT
CAGAATCTTGCCAACACGCTCTATCGAGGTGAGTGCGGCGCCAGGGATGT
TCCTCGTGCAATCCAACTTTTGCAGCGCGCCATCGCCATTTCCAAAGATC
CTCAGTGTATGGCAGATCTCGCCACCATAATACTCAAAGAGAAGCAAGTC
GTCGGCGATAAGAAATACGCTTTGAATCTGTACAAGCAGGCTATCCAACT
TTCCGATGATGCCAGTCTCATGAACAATCTTGGCGTCATATACATGGATG
GTACTGCTCATGTCTCATCGTGCGATTGTTGTGCTGCTAAATGGTTCGAA
CGTGCCATTCAAACCGCTGATCTCCCCACCACAAAGTACAACTACGCTTC
ATTGCTTGTCAATAGCAACCGCATCAAACGAGATCCCATTCGAGCCACAC
GTCTTTTGGAACAAGCTGTGAAAGATCGAGCCTGCGAAGATTTCGTCATT
GGTCTTGCAGATATCTACGAAACATGCGAGCAAGTCCTTGATTTCCAACG
GGCTGTTCATCTGTATCAGCGAGCCTACTCTGAGTACGGCTCCATTATCG
CGTTGAATCGACTCATTTACATATTGGCATTTGGTCGTGATGGCGTTGCC
GTAAATTTGTCCAAAGCGTACGAGCTTTGTAAGAATTATTATCGACGCAC
CAAACGACACAACTTTTTGATGATTCAGGCTTGTATCTTGTGGAGTGGAA
CTCCTGGTTTACCCCGCAATCCGCTGCGAGCTTCGAAGATTTGCTCACGA
TATCTCGACGTCGGATGTGGTACCTTGGCTTTAATGATGCGCTGTGGCGC
CCCAGGTGTGCCGCCCGATCTGCAACAGGTGAAGAAGGTGTCAAATGATC
TGGTTGAAGCCAACCGTTTATTCTTGGACGCCCTAATTATCAGTGAAACT
GCCTATGATTGTGGCAAGTATCAACAAGCAGAGCAGAAGTTTCTCGCTGT
GTTGGACATTGACGAGGAGCAATTACGAAACGATTTTGTCTGGTTGCCGT
TGTGCCTCCGAATTGGAAACATTCAACTACCATATGCAGGCGACGCTGAA
CATGTGCCAAACGGTATCAAGCGCTTTGAGCAGGTGCATAATGTTAGCAC
ATTGAATCTAGCAAGCATATATCTCGAACGAAATGAGGGTGCTCAAGCTG
TGCGAATGTATGAATCACTGATGGAAACGGATATCAGAGATATTGCAATG
GTCAATCTTGGATACGTGCTCAGAGAAGGGCTTGGTGGCATTGAAAGAGA
TACACAACGTGCGAAACAGCTGTTTGAAGGTTGTGTCAAGGAGTACAAGA
ACGTGTTTGCAGGCGCCTTCTTTGTGGATATGCTGGTCGATGGAAGTGTT
TTGAGCCAAGATGCAAAGATGGCTGGTATCAAAGTTTGGCAATCTGTTAC
AGAAGATTGTCTAGATGAAGTGGAACGCCATATTCTGGGCCAATTGCTCT
CGCGGAATGGAAAACTGGTCATTTTGAGCTGTACACTCTCGGATGATAAC
TGCAGCGGAGAAGCTACCCTGGGAAAGGGAGCCGCATGA

Coding sequence (CDS) from alignment at tig00000005_pilon:326964..328802+

>Ggra2445.t1 ID=Ggra2445.t1|Name=Ggra2445.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00000005_pilon:326964..328802+ (Gracilaria gracilis GNS1m male)
ATGCCGTCCTCTCGCCGCCTCCTACAACAGGTAGCCCAGTATGAAAGCGC
CATCAAGCAGCACAACGACGTCAATGCCATGGTTGATCTCGCCTACATTC
TCCTGTACGAACCCACCATACCCAACGACGTTTCTCGGGCCTTCCAATTG
CTTGAACGCGCCATCAAACAGGCCCGCCATCCGCAGGCTATGAATGTGCT
CGCCGTTTACCTGCACAACAATGGAAATCGCAAACAGCGTCGACGCGTCA
TCCAGCTTTTGGAGCAATCCGTACGAAGTCAACTCAATTGCAAGGTACTT
CAGAATCTTGCCAACACGCTCTATCGAGGTGAGTGCGGCGCCAGGGATGT
TCCTCGTGCAATCCAACTTTTGCAGCGCGCCATCGCCATTTCCAAAGATC
CTCAGTGTATGGCAGATCTCGCCACCATAATACTCAAAGAGAAGCAAGTC
GTCGGCGATAAGAAATACGCTTTGAATCTGTACAAGCAGGCTATCCAACT
TTCCGATGATGCCAGTCTCATGAACAATCTTGGCGTCATATACATGGATG
GTACTGCTCATGTCTCATCGTGCGATTGTTGTGCTGCTAAATGGTTCGAA
CGTGCCATTCAAACCGCTGATCTCCCCACCACAAAGTACAACTACGCTTC
ATTGCTTGTCAATAGCAACCGCATCAAACGAGATCCCATTCGAGCCACAC
GTCTTTTGGAACAAGCTGTGAAAGATCGAGCCTGCGAAGATTTCGTCATT
GGTCTTGCAGATATCTACGAAACATGCGAGCAAGTCCTTGATTTCCAACG
GGCTGTTCATCTGTATCAGCGAGCCTACTCTGAGTACGGCTCCATTATCG
CGTTGAATCGACTCATTTACATATTGGCATTTGGTCGTGATGGCGTTGCC
GTAAATTTGTCCAAAGCGTACGAGCTTTGTAAGAATTATTATCGACGCAC
CAAACGACACAACTTTTTGATGATTCAGGCTTGTATCTTGTGGAGTGGAA
CTCCTGGTTTACCCCGCAATCCGCTGCGAGCTTCGAAGATTTGCTCACGA
TATCTCGACGTCGGATGTGGTACCTTGGCTTTAATGATGCGCTGTGGCGC
CCCAGGTGTGCCGCCCGATCTGCAACAGGTGAAGAAGGTGTCAAATGATC
TGGTTGAAGCCAACCGTTTATTCTTGGACGCCCTAATTATCAGTGAAACT
GCCTATGATTGTGGCAAGTATCAACAAGCAGAGCAGAAGTTTCTCGCTGT
GTTGGACATTGACGAGGAGCAATTACGAAACGATTTTGTCTGGTTGCCGT
TGTGCCTCCGAATTGGAAACATTCAACTACCATATGCAGGCGACGCTGAA
CATGTGCCAAACGGTATCAAGCGCTTTGAGCAGGTGCATAATGTTAGCAC
ATTGAATCTAGCAAGCATATATCTCGAACGAAATGAGGGTGCTCAAGCTG
TGCGAATGTATGAATCACTGATGGAAACGGATATCAGAGATATTGCAATG
GTCAATCTTGGATACGTGCTCAGAGAAGGGCTTGGTGGCATTGAAAGAGA
TACACAACGTGCGAAACAGCTGTTTGAAGGTTGTGTCAAGGAGTACAAGA
ACGTGTTTGCAGGCGCCTTCTTTGTGGATATGCTGGTCGATGGAAGTGTT
TTGAGCCAAGATGCAAAGATGGCTGGTATCAAAGTTTGGCAATCTGTTAC
AGAAGATTGTCTAGATGAAGTGGAACGCCATATTCTGGGCCAATTGCTCT
CGCGGAATGGAAAACTGGTCATTTTGAGCTGTACACTCTCGGATGATAAC
TGCAGCGGAGAAGCTACCCTGGGAAAGGGAGCCGCATGA