Ggra2443.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2443.t1
Unique NameGgra2443.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:322687..323450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391625.PPSIR1_15905
Max annot lvl1224|Proteobacteria
Evalue4.83e-60
EggNOG OGs2A1KC@1|root,30PUB@2|Bacteria,1RGDX@1224|Proteobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2443Ggra2443Gracilaria gracilis GNS1m malegenetig00000005_pilon 322687..323450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2443.t1Ggra2443.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 322687..323450 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2443.t1.stop1Ggra2443.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 322687..322689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2443.t1.CDS1Ggra2443.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 322687..322783 -
Ggra2443.t1.CDS2Ggra2443.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 322882..323450 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2443.t1.exon1Ggra2443.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 322687..322783 -
Ggra2443.t1.exon2Ggra2443.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 322882..323450 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2443.t1.intron1Ggra2443.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 322784..322881 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2443.t1.start1Ggra2443.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 323448..323450 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2443.t1 ID=Ggra2443.t1|Name=Ggra2443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MPVTLHQYAYVNGTSEYKYGHNSIPTVKAVGAPPDANYARCAMLHGDDKY
RFYCFKGSSSDTIYQLVWNGSAYQYDHGGAIPELKITGLPEDASTSKFAM
LHDGGAYRLYVQKLGAPVLYQCAWNGSSYAYGHNSIPEVKITDFPADADI
SRWDMLHDGSAYRFYCMSFSNPKIVYQGAFSGGSYAFGASLSSGRLCCST
DLDNMSSIVSSESNAISNLDD*
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spliced messenger RNA

>Ggra2443.t1 ID=Ggra2443.t1|Name=Ggra2443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000005_pilon:322687..323450- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTCACACTTCATCAATACGCTTACGTCAATGGCACCAGCGAATA
CAAGTACGGTCATAACTCGATCCCCACCGTCAAGGCGGTGGGCGCCCCAC
CGGATGCAAACTACGCCCGGTGTGCCATGTTGCACGGAGACGACAAGTAC
CGCTTTTACTGTTTCAAGGGAAGCTCCTCCGACACCATCTACCAGTTAGT
CTGGAACGGTAGTGCCTATCAATACGACCACGGCGGCGCGATCCCGGAAC
TGAAGATCACTGGTCTACCGGAGGATGCTTCTACCAGCAAGTTTGCTATG
CTTCATGACGGTGGAGCTTATCGGCTCTATGTGCAGAAGTTAGGTGCTCC
AGTTTTGTACCAATGCGCCTGGAATGGTTCTAGCTACGCTTATGGCCACA
ACTCCATTCCGGAGGTCAAAATTACTGACTTCCCTGCCGATGCAGATATC
AGCCGTTGGGATATGCTTCACGACGGCAGCGCATATCGCTTCTATTGTAT
GTCGTTTTCGAACCCTAAGATTGTATACCAAGGCGCGTTCTCTGGTGGAA
GCTACGCATTTGGTGCCAGTCTAAGTTCGGGTCGTCTCTGCTGCTCGACA
GATCTAGATAATATGTCAAGCATTGTTTCAAGCGAGAGTAACGCCATTTC
GAATCTTGACGACTAA
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protein sequence of Ggra2443.t1

>Ggra2443.t1 ID=Ggra2443.t1|Name=Ggra2443.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MPVTLHQYAYVNGTSEYKYGHNSIPTVKAVGAPPDANYARCAMLHGDDKY
RFYCFKGSSSDTIYQLVWNGSAYQYDHGGAIPELKITGLPEDASTSKFAM
LHDGGAYRLYVQKLGAPVLYQCAWNGSSYAYGHNSIPEVKITDFPADADI
SRWDMLHDGSAYRFYCMSFSNPKIVYQGAFSGGSYAFGASLSSGRLCCST
DLDNMSSIVSSESNAISNLDD*
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mRNA from alignment at tig00000005_pilon:322687..323450-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2443.t1 ID=Ggra2443.t1|Name=Ggra2443.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=764bp|location=Sequence derived from alignment at tig00000005_pilon:322687..323450- (Gracilaria gracilis GNS1m male)
ATGCCGGTCACACTTCATCAATACGCTTACGTCAATGGCACCAGCGAATA
CAAGTACGGTCATAACTCGATCCCCACCGTCAAGGCGGTGGGCGCCCCAC
CGGATGCAAACTACGCCCGGTGTGCCATGTTGCACGGAGACGACAAGTAC
CGCTTTTACTGTTTCAAGGGAAGCTCCTCCGACACCATCTACCAGTTAGT
CTGGAACGGTAGTGCCTATCAATACGACCACGGCGGCGCGATCCCGGAAC
TGAAGATCACTGGTCTACCGGAGGATGCTTCTACCAGCAAGTTTGCTATG
CTTCATGACGGTGGAGCTTATCGGCTCTATGTGCAGAAGTTAGGTGCTCC
AGTTTTGTACCAATGCGCCTGGAATGGTTCTAGCTACGCTTATGGCCACA
ACTCCATTCCGGAGGTCAAAATTACTGACTTCCCTGCCGATGCAGATATC
AGCCGTTGGGATATGCTTCACGACGGCAGCGCATATCGCTTCTATTGTAT
GTCGTTTTCGAACCCTAAGATTGTATACCAAGGCGCGTTCTCTGGTGGAA
GCTACGCATTTGGTGCCAGGTCAGTTCCGAAGCTCTCGTTGACAAACAAC
CCGGATACTGTTGTATACAGTGACGTCTGCATGTTGTACGATGGAAGTAC
TTACCGCATGTACGTAGTCTAAGTTCGGGTCGTCTCTGCTGCTCGACAGA
TCTAGATAATATGTCAAGCATTGTTTCAAGCGAGAGTAACGCCATTTCGA
ATCTTGACGACTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:322687..323450-

>Ggra2443.t1 ID=Ggra2443.t1|Name=Ggra2443.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000005_pilon:322687..323450- (Gracilaria gracilis GNS1m male)
ATGCCGGTCACACTTCATCAATACGCTTACGTCAATGGCACCAGCGAATA
CAAGTACGGTCATAACTCGATCCCCACCGTCAAGGCGGTGGGCGCCCCAC
CGGATGCAAACTACGCCCGGTGTGCCATGTTGCACGGAGACGACAAGTAC
CGCTTTTACTGTTTCAAGGGAAGCTCCTCCGACACCATCTACCAGTTAGT
CTGGAACGGTAGTGCCTATCAATACGACCACGGCGGCGCGATCCCGGAAC
TGAAGATCACTGGTCTACCGGAGGATGCTTCTACCAGCAAGTTTGCTATG
CTTCATGACGGTGGAGCTTATCGGCTCTATGTGCAGAAGTTAGGTGCTCC
AGTTTTGTACCAATGCGCCTGGAATGGTTCTAGCTACGCTTATGGCCACA
ACTCCATTCCGGAGGTCAAAATTACTGACTTCCCTGCCGATGCAGATATC
AGCCGTTGGGATATGCTTCACGACGGCAGCGCATATCGCTTCTATTGTAT
GTCGTTTTCGAACCCTAAGATTGTATACCAAGGCGCGTTCTCTGGTGGAA
GCTACGCATTTGGTGCCAGTCTAAGTTCGGGTCGTCTCTGCTGCTCGACA
GATCTAGATAATATGTCAAGCATTGTTTCAAGCGAGAGTAACGCCATTTC
GAATCTTGACGACTAA
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