Ggra2436.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2436.t1
Unique Name	Ggra2436.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:282320..284092 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	1.17e-30
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2436	Ggra2436	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 282320..284092 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2436.t1.stop1	Ggra2436.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 282320..282322 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2436.t1.CDS1	Ggra2436.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 282320..284092 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2436.t1.exon1	Ggra2436.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 282320..284092 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2436.t1.start1	Ggra2436.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 284090..284092 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2436.t1	Ggra2436.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 282320..284092 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:282320..284092-
coding sequence from alignment at tig00000005_pilon:282320..284092-

mRNA sequence

>Ggra2436.t1 ID=Ggra2436.t1|Name=Ggra2436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp
LPGWLAAIRPQDDVLLVDWGTRPPDHVPLEEVVRISAGPKVAVVTVKEPG
QWVLSRAYNLAFALATGEWIFKVDCDTEVRQSFFDRHPLQRSNPQSSFFY
RYDWRKAPDDNQKHLAGVFLARADHIARVHGYDERIATYGWDDSDLYSRL
QANGTPEGEKLVPLDIQPATLSHMSHGDDLRSANQHLIMGPSMETELNSQ
AVSVLSSWQDVAPTQRTIYAFDIFSRDARFIAARAQSTPVPLLDQLSQDQ
RSSIMEEGTNRLLHDTYGFPWIVLSEINRSRSELARSLAALGKSLKSRSP
SGLIFAEVGGSVPQRLLAMSSALALAIIHERPLFLAWSAGSRDEPTPRIT
DFFDVDNSGFLLDDNLLMSSRRKGARVYQVGRWKCRYSLDICAQSDPAFQ
TMVEFRTGAHEDEAKAAQDVLDVLNGKVSGKRNVLLRLEGAFPLQSTGER
SRAFASLTPSSALASHINKLGVVSDHVGVYLGPGIRQRGIDAMVRRLRLH
TGSDTLYFVSGAERSVVDVSRKLLPSSSEVSTAVEEPVLYGATEEIRDTT
RDIAELYALSTCRDMVNDGRPPASVIEVLSLLKRRTSMRP*

spliced messenger RNA

>Ggra2436.t1 ID=Ggra2436.t1|Name=Ggra2436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000005_pilon:282320..284092- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCAGGCTGGTTGGCCGCCATCAGACCGCAGGACGATGTTTTGCTCGT
TGATTGGGGTACCAGACCGCCAGACCATGTTCCCCTCGAGGAGGTTGTCA
GAATATCTGCTGGCCCGAAGGTAGCTGTTGTTACCGTAAAAGAGCCGGGT
CAGTGGGTCTTGTCCCGAGCGTATAATCTTGCGTTCGCACTTGCCACTGG
TGAGTGGATTTTCAAGGTGGACTGTGATACGGAGGTTCGCCAAAGCTTTT
TCGATCGCCATCCACTACAAAGAAGTAATCCCCAATCCTCCTTCTTCTAT
CGCTATGACTGGAGAAAGGCACCAGACGACAACCAAAAGCATCTGGCAGG
TGTTTTCCTTGCTCGTGCTGACCATATAGCTCGTGTTCACGGTTATGATG
AGCGAATCGCCACATATGGCTGGGATGACTCTGATCTCTACTCCCGTTTG
CAAGCCAATGGTACTCCAGAAGGGGAAAAACTTGTACCCCTTGACATCCA
GCCAGCTACCTTGTCTCACATGAGCCATGGCGATGACCTTAGGTCAGCAA
ACCAGCATCTTATTATGGGACCTTCAATGGAAACTGAGCTCAACAGTCAA
GCTGTGTCAGTGCTTTCCAGTTGGCAAGACGTTGCCCCCACACAGAGAAC
CATCTATGCATTCGACATATTCTCACGAGATGCACGCTTCATTGCCGCAA
GAGCTCAAAGCACACCCGTCCCACTTCTTGACCAACTATCACAAGACCAA
CGCTCTTCCATCATGGAAGAAGGCACCAATCGATTGCTCCACGACACTTA
CGGCTTCCCCTGGATCGTGTTGTCAGAAATCAATCGGTCACGCTCAGAAC
TGGCACGTTCACTAGCTGCATTAGGGAAGTCTCTCAAATCCCGTTCGCCA
TCTGGTCTAATATTCGCCGAAGTCGGTGGATCTGTGCCTCAGCGTCTACT
AGCAATGTCTTCTGCTCTCGCACTAGCAATTATTCATGAACGGCCCTTGT
TCCTTGCTTGGAGTGCCGGCTCAAGAGACGAACCTACACCACGAATCACC
GACTTTTTCGACGTTGATAACAGTGGCTTTCTGTTAGACGATAACCTTTT
GATGTCTTCTAGACGCAAGGGTGCACGTGTTTATCAGGTCGGAAGATGGA
AATGTCGTTACTCATTGGATATCTGTGCACAGTCAGATCCTGCATTCCAA
ACTATGGTCGAGTTTCGTACTGGCGCGCATGAAGATGAAGCCAAAGCTGC
ACAAGATGTGCTCGATGTCCTCAACGGCAAGGTTTCCGGCAAGAGAAACG
TCTTACTCAGATTGGAGGGTGCTTTTCCGTTACAATCAACTGGAGAGAGG
TCCCGCGCTTTTGCCTCTCTTACGCCCTCGTCGGCATTGGCGTCCCACAT
TAATAAGCTGGGAGTGGTTTCGGATCATGTCGGAGTTTATCTTGGTCCCG
GCATTAGGCAAAGAGGTATTGATGCTATGGTAAGGCGACTACGACTTCAC
ACAGGTAGTGATACCTTGTATTTCGTCAGCGGCGCTGAGCGCAGCGTTGT
AGATGTTTCCCGAAAGTTGTTGCCTTCATCTTCAGAAGTGTCGACCGCTG
TCGAAGAACCTGTGTTGTATGGAGCCACGGAAGAAATCCGAGATACAACA
AGAGACATTGCCGAACTGTATGCGCTCTCGACATGCCGAGATATGGTGAA
CGACGGGCGTCCACCTGCTTCTGTCATTGAGGTTCTTTCGCTGCTAAAAC
GTCGCACGTCTATGCGTCCTTGA

protein sequence of Ggra2436.t1

>Ggra2436.t1 ID=Ggra2436.t1|Name=Ggra2436.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
LPGWLAAIRPQDDVLLVDWGTRPPDHVPLEEVVRISAGPKVAVVTVKEPG
QWVLSRAYNLAFALATGEWIFKVDCDTEVRQSFFDRHPLQRSNPQSSFFY
RYDWRKAPDDNQKHLAGVFLARADHIARVHGYDERIATYGWDDSDLYSRL
QANGTPEGEKLVPLDIQPATLSHMSHGDDLRSANQHLIMGPSMETELNSQ
AVSVLSSWQDVAPTQRTIYAFDIFSRDARFIAARAQSTPVPLLDQLSQDQ
RSSIMEEGTNRLLHDTYGFPWIVLSEINRSRSELARSLAALGKSLKSRSP
SGLIFAEVGGSVPQRLLAMSSALALAIIHERPLFLAWSAGSRDEPTPRIT
DFFDVDNSGFLLDDNLLMSSRRKGARVYQVGRWKCRYSLDICAQSDPAFQ
TMVEFRTGAHEDEAKAAQDVLDVLNGKVSGKRNVLLRLEGAFPLQSTGER
SRAFASLTPSSALASHINKLGVVSDHVGVYLGPGIRQRGIDAMVRRLRLH
TGSDTLYFVSGAERSVVDVSRKLLPSSSEVSTAVEEPVLYGATEEIRDTT
RDIAELYALSTCRDMVNDGRPPASVIEVLSLLKRRTSMRP*

mRNA from alignment at tig00000005_pilon:282320..284092-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2436.t1 ID=Ggra2436.t1|Name=Ggra2436.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000005_pilon:282320..284092- (Gracilaria gracilis GNS1m male)
TTGCCAGGCTGGTTGGCCGCCATCAGACCGCAGGACGATGTTTTGCTCGT
TGATTGGGGTACCAGACCGCCAGACCATGTTCCCCTCGAGGAGGTTGTCA
GAATATCTGCTGGCCCGAAGGTAGCTGTTGTTACCGTAAAAGAGCCGGGT
CAGTGGGTCTTGTCCCGAGCGTATAATCTTGCGTTCGCACTTGCCACTGG
TGAGTGGATTTTCAAGGTGGACTGTGATACGGAGGTTCGCCAAAGCTTTT
TCGATCGCCATCCACTACAAAGAAGTAATCCCCAATCCTCCTTCTTCTAT
CGCTATGACTGGAGAAAGGCACCAGACGACAACCAAAAGCATCTGGCAGG
TGTTTTCCTTGCTCGTGCTGACCATATAGCTCGTGTTCACGGTTATGATG
AGCGAATCGCCACATATGGCTGGGATGACTCTGATCTCTACTCCCGTTTG
CAAGCCAATGGTACTCCAGAAGGGGAAAAACTTGTACCCCTTGACATCCA
GCCAGCTACCTTGTCTCACATGAGCCATGGCGATGACCTTAGGTCAGCAA
ACCAGCATCTTATTATGGGACCTTCAATGGAAACTGAGCTCAACAGTCAA
GCTGTGTCAGTGCTTTCCAGTTGGCAAGACGTTGCCCCCACACAGAGAAC
CATCTATGCATTCGACATATTCTCACGAGATGCACGCTTCATTGCCGCAA
GAGCTCAAAGCACACCCGTCCCACTTCTTGACCAACTATCACAAGACCAA
CGCTCTTCCATCATGGAAGAAGGCACCAATCGATTGCTCCACGACACTTA
CGGCTTCCCCTGGATCGTGTTGTCAGAAATCAATCGGTCACGCTCAGAAC
TGGCACGTTCACTAGCTGCATTAGGGAAGTCTCTCAAATCCCGTTCGCCA
TCTGGTCTAATATTCGCCGAAGTCGGTGGATCTGTGCCTCAGCGTCTACT
AGCAATGTCTTCTGCTCTCGCACTAGCAATTATTCATGAACGGCCCTTGT
TCCTTGCTTGGAGTGCCGGCTCAAGAGACGAACCTACACCACGAATCACC
GACTTTTTCGACGTTGATAACAGTGGCTTTCTGTTAGACGATAACCTTTT
GATGTCTTCTAGACGCAAGGGTGCACGTGTTTATCAGGTCGGAAGATGGA
AATGTCGTTACTCATTGGATATCTGTGCACAGTCAGATCCTGCATTCCAA
ACTATGGTCGAGTTTCGTACTGGCGCGCATGAAGATGAAGCCAAAGCTGC
ACAAGATGTGCTCGATGTCCTCAACGGCAAGGTTTCCGGCAAGAGAAACG
TCTTACTCAGATTGGAGGGTGCTTTTCCGTTACAATCAACTGGAGAGAGG
TCCCGCGCTTTTGCCTCTCTTACGCCCTCGTCGGCATTGGCGTCCCACAT
TAATAAGCTGGGAGTGGTTTCGGATCATGTCGGAGTTTATCTTGGTCCCG
GCATTAGGCAAAGAGGTATTGATGCTATGGTAAGGCGACTACGACTTCAC
ACAGGTAGTGATACCTTGTATTTCGTCAGCGGCGCTGAGCGCAGCGTTGT
AGATGTTTCCCGAAAGTTGTTGCCTTCATCTTCAGAAGTGTCGACCGCTG
TCGAAGAACCTGTGTTGTATGGAGCCACGGAAGAAATCCGAGATACAACA
AGAGACATTGCCGAACTGTATGCGCTCTCGACATGCCGAGATATGGTGAA
CGACGGGCGTCCACCTGCTTCTGTCATTGAGGTTCTTTCGCTGCTAAAAC
GTCGCACGTCTATGCGTCCTTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:282320..284092-

>Ggra2436.t1 ID=Ggra2436.t1|Name=Ggra2436.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000005_pilon:282320..284092- (Gracilaria gracilis GNS1m male)
TTGCCAGGCTGGTTGGCCGCCATCAGACCGCAGGACGATGTTTTGCTCGT
TGATTGGGGTACCAGACCGCCAGACCATGTTCCCCTCGAGGAGGTTGTCA
GAATATCTGCTGGCCCGAAGGTAGCTGTTGTTACCGTAAAAGAGCCGGGT
CAGTGGGTCTTGTCCCGAGCGTATAATCTTGCGTTCGCACTTGCCACTGG
TGAGTGGATTTTCAAGGTGGACTGTGATACGGAGGTTCGCCAAAGCTTTT
TCGATCGCCATCCACTACAAAGAAGTAATCCCCAATCCTCCTTCTTCTAT
CGCTATGACTGGAGAAAGGCACCAGACGACAACCAAAAGCATCTGGCAGG
TGTTTTCCTTGCTCGTGCTGACCATATAGCTCGTGTTCACGGTTATGATG
AGCGAATCGCCACATATGGCTGGGATGACTCTGATCTCTACTCCCGTTTG
CAAGCCAATGGTACTCCAGAAGGGGAAAAACTTGTACCCCTTGACATCCA
GCCAGCTACCTTGTCTCACATGAGCCATGGCGATGACCTTAGGTCAGCAA
ACCAGCATCTTATTATGGGACCTTCAATGGAAACTGAGCTCAACAGTCAA
GCTGTGTCAGTGCTTTCCAGTTGGCAAGACGTTGCCCCCACACAGAGAAC
CATCTATGCATTCGACATATTCTCACGAGATGCACGCTTCATTGCCGCAA
GAGCTCAAAGCACACCCGTCCCACTTCTTGACCAACTATCACAAGACCAA
CGCTCTTCCATCATGGAAGAAGGCACCAATCGATTGCTCCACGACACTTA
CGGCTTCCCCTGGATCGTGTTGTCAGAAATCAATCGGTCACGCTCAGAAC
TGGCACGTTCACTAGCTGCATTAGGGAAGTCTCTCAAATCCCGTTCGCCA
TCTGGTCTAATATTCGCCGAAGTCGGTGGATCTGTGCCTCAGCGTCTACT
AGCAATGTCTTCTGCTCTCGCACTAGCAATTATTCATGAACGGCCCTTGT
TCCTTGCTTGGAGTGCCGGCTCAAGAGACGAACCTACACCACGAATCACC
GACTTTTTCGACGTTGATAACAGTGGCTTTCTGTTAGACGATAACCTTTT
GATGTCTTCTAGACGCAAGGGTGCACGTGTTTATCAGGTCGGAAGATGGA
AATGTCGTTACTCATTGGATATCTGTGCACAGTCAGATCCTGCATTCCAA
ACTATGGTCGAGTTTCGTACTGGCGCGCATGAAGATGAAGCCAAAGCTGC
ACAAGATGTGCTCGATGTCCTCAACGGCAAGGTTTCCGGCAAGAGAAACG
TCTTACTCAGATTGGAGGGTGCTTTTCCGTTACAATCAACTGGAGAGAGG
TCCCGCGCTTTTGCCTCTCTTACGCCCTCGTCGGCATTGGCGTCCCACAT
TAATAAGCTGGGAGTGGTTTCGGATCATGTCGGAGTTTATCTTGGTCCCG
GCATTAGGCAAAGAGGTATTGATGCTATGGTAAGGCGACTACGACTTCAC
ACAGGTAGTGATACCTTGTATTTCGTCAGCGGCGCTGAGCGCAGCGTTGT
AGATGTTTCCCGAAAGTTGTTGCCTTCATCTTCAGAAGTGTCGACCGCTG
TCGAAGAACCTGTGTTGTATGGAGCCACGGAAGAAATCCGAGATACAACA
AGAGACATTGCCGAACTGTATGCGCTCTCGACATGCCGAGATATGGTGAA
CGACGGGCGTCCACCTGCTTCTGTCATTGAGGTTCTTTCGCTGCTAAAAC
GTCGCACGTCTATGCGTCCTTGA