Ggra2425.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2425.t1
Unique Name	Ggra2425.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	460

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:244549..245928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2425	Ggra2425	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 244549..245928 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2425.t1.start1	Ggra2425.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 244549..244551 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2425.t1.CDS1	Ggra2425.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 244549..245928 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2425.t1.exon1	Ggra2425.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 244549..245928 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2425.t1.stop1	Ggra2425.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 245926..245928 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2425.t1	Ggra2425.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 244549..245928 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:244549..245928+
coding sequence from alignment at tig00000005_pilon:244549..245928+

mRNA sequence

>Ggra2425.t1 ID=Ggra2425.t1|Name=Ggra2425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=460bp
MGTSAVEWNRDLLTRLLHAIVLSRGSLTLAAALLPDLSTGAIRKALRQIS
LAHRNPSSWSDAKHTTFVVHRVANHSMPPATPPPAAPPASTVPKRVVLQL
VPASKRDAAIVRAGNHHPFLELKLRPRRPLWDVYAHVYTKWRLPIGLLTL
NHLSIHTSVASILPQGSALVRLQYNVINLPVDFSALSCFLPTDHQPHPPT
KQLLTTDTDDHFWTENTASHLPILDFGSDSLFNLSSNHIDSHPPPPESCT
PFMKNRRVVAPLSLRPHLHPQKKKPSRARTRPTPPHNKSIVPLPSARPTI
QKVQNNGEKAVLSRLRSHLEQLSSKPSEPAETTNTDMPVPTCTVGADTNN
LNLSLLAASDSMFAMGLSTPLQQSVINEDANEAEHGTATGVQLGHEAIDL
MVRDELAVDLNHVTHFNAQQLAATEAERATLLPAPDASLNFSALFQDLEP
RAPFLTSNY*

spliced messenger RNA

>Ggra2425.t1 ID=Ggra2425.t1|Name=Ggra2425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000005_pilon:244549..245928+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACTTCCGCTGTCGAATGGAACCGCGACCTGCTCACGCGTCTCCT
TCACGCAATCGTGCTATCGCGCGGCTCGCTCACGCTTGCTGCCGCGTTGC
TACCCGACCTCTCCACCGGCGCTATCCGCAAGGCCCTTCGCCAAATTTCG
CTTGCACATCGTAATCCTTCATCGTGGTCCGACGCCAAGCATACTACGTT
CGTGGTGCATCGCGTCGCGAACCACTCCATGCCTCCAGCAACGCCTCCAC
CGGCGGCACCGCCCGCTTCCACTGTCCCCAAGCGTGTTGTGCTGCAACTC
GTCCCGGCCTCAAAGCGTGACGCTGCCATAGTGCGTGCTGGAAACCATCA
CCCGTTTCTGGAACTCAAGCTGCGTCCTCGACGACCATTATGGGATGTAT
ATGCGCACGTCTACACAAAGTGGCGTTTACCGATCGGTTTGCTCACTCTC
AATCATCTCAGCATTCACACTTCTGTGGCTTCTATCCTTCCACAAGGCTC
TGCGCTAGTGCGTCTGCAGTACAACGTAATCAACCTTCCTGTCGATTTCT
CAGCGCTTTCATGTTTTCTACCGACCGATCATCAACCACACCCTCCCACC
AAGCAACTACTAACTACAGACACCGACGATCATTTCTGGACTGAGAACAC
TGCCTCACACCTTCCGATTCTGGATTTTGGTTCTGATTCTCTCTTCAACC
TCTCGTCAAACCATATCGATTCACATCCTCCGCCCCCAGAATCCTGCACA
CCATTCATGAAGAATCGTCGCGTCGTCGCACCTCTCTCACTACGTCCGCA
TCTCCATCCTCAAAAGAAGAAGCCGAGCAGGGCTCGAACACGGCCTACTC
CGCCTCATAACAAGTCAATCGTTCCGCTGCCGTCAGCACGTCCCACCATA
CAAAAGGTGCAGAACAATGGCGAAAAAGCTGTTTTGAGTCGTCTGCGCTC
TCACTTGGAACAGCTTTCATCCAAGCCGTCGGAACCTGCTGAAACCACTA
ATACAGACATGCCCGTGCCGACTTGTACCGTTGGTGCTGATACTAACAAT
CTTAACTTATCGCTTCTGGCTGCATCTGATTCAATGTTCGCCATGGGGCT
ATCGACCCCTTTGCAACAATCTGTCATCAACGAAGATGCGAATGAAGCTG
AACATGGTACTGCTACTGGCGTTCAACTTGGGCACGAAGCCATTGATCTA
ATGGTGCGCGATGAGTTGGCCGTTGATCTTAATCATGTGACTCACTTCAA
CGCTCAGCAATTGGCTGCCACGGAAGCAGAACGTGCCACACTTCTCCCCG
CGCCTGATGCATCACTTAACTTTTCCGCTTTGTTTCAAGACTTAGAGCCC
AGAGCACCATTTTTGACATCGAACTATTGA

protein sequence of Ggra2425.t1

>Ggra2425.t1 ID=Ggra2425.t1|Name=Ggra2425.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=460bp
MGTSAVEWNRDLLTRLLHAIVLSRGSLTLAAALLPDLSTGAIRKALRQIS
LAHRNPSSWSDAKHTTFVVHRVANHSMPPATPPPAAPPASTVPKRVVLQL
VPASKRDAAIVRAGNHHPFLELKLRPRRPLWDVYAHVYTKWRLPIGLLTL
NHLSIHTSVASILPQGSALVRLQYNVINLPVDFSALSCFLPTDHQPHPPT
KQLLTTDTDDHFWTENTASHLPILDFGSDSLFNLSSNHIDSHPPPPESCT
PFMKNRRVVAPLSLRPHLHPQKKKPSRARTRPTPPHNKSIVPLPSARPTI
QKVQNNGEKAVLSRLRSHLEQLSSKPSEPAETTNTDMPVPTCTVGADTNN
LNLSLLAASDSMFAMGLSTPLQQSVINEDANEAEHGTATGVQLGHEAIDL
MVRDELAVDLNHVTHFNAQQLAATEAERATLLPAPDASLNFSALFQDLEP
RAPFLTSNY*

mRNA from alignment at tig00000005_pilon:244549..245928+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2425.t1 ID=Ggra2425.t1|Name=Ggra2425.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00000005_pilon:244549..245928+ (Gracilaria gracilis GNS1m male)
ATGGGCACTTCCGCTGTCGAATGGAACCGCGACCTGCTCACGCGTCTCCT
TCACGCAATCGTGCTATCGCGCGGCTCGCTCACGCTTGCTGCCGCGTTGC
TACCCGACCTCTCCACCGGCGCTATCCGCAAGGCCCTTCGCCAAATTTCG
CTTGCACATCGTAATCCTTCATCGTGGTCCGACGCCAAGCATACTACGTT
CGTGGTGCATCGCGTCGCGAACCACTCCATGCCTCCAGCAACGCCTCCAC
CGGCGGCACCGCCCGCTTCCACTGTCCCCAAGCGTGTTGTGCTGCAACTC
GTCCCGGCCTCAAAGCGTGACGCTGCCATAGTGCGTGCTGGAAACCATCA
CCCGTTTCTGGAACTCAAGCTGCGTCCTCGACGACCATTATGGGATGTAT
ATGCGCACGTCTACACAAAGTGGCGTTTACCGATCGGTTTGCTCACTCTC
AATCATCTCAGCATTCACACTTCTGTGGCTTCTATCCTTCCACAAGGCTC
TGCGCTAGTGCGTCTGCAGTACAACGTAATCAACCTTCCTGTCGATTTCT
CAGCGCTTTCATGTTTTCTACCGACCGATCATCAACCACACCCTCCCACC
AAGCAACTACTAACTACAGACACCGACGATCATTTCTGGACTGAGAACAC
TGCCTCACACCTTCCGATTCTGGATTTTGGTTCTGATTCTCTCTTCAACC
TCTCGTCAAACCATATCGATTCACATCCTCCGCCCCCAGAATCCTGCACA
CCATTCATGAAGAATCGTCGCGTCGTCGCACCTCTCTCACTACGTCCGCA
TCTCCATCCTCAAAAGAAGAAGCCGAGCAGGGCTCGAACACGGCCTACTC
CGCCTCATAACAAGTCAATCGTTCCGCTGCCGTCAGCACGTCCCACCATA
CAAAAGGTGCAGAACAATGGCGAAAAAGCTGTTTTGAGTCGTCTGCGCTC
TCACTTGGAACAGCTTTCATCCAAGCCGTCGGAACCTGCTGAAACCACTA
ATACAGACATGCCCGTGCCGACTTGTACCGTTGGTGCTGATACTAACAAT
CTTAACTTATCGCTTCTGGCTGCATCTGATTCAATGTTCGCCATGGGGCT
ATCGACCCCTTTGCAACAATCTGTCATCAACGAAGATGCGAATGAAGCTG
AACATGGTACTGCTACTGGCGTTCAACTTGGGCACGAAGCCATTGATCTA
ATGGTGCGCGATGAGTTGGCCGTTGATCTTAATCATGTGACTCACTTCAA
CGCTCAGCAATTGGCTGCCACGGAAGCAGAACGTGCCACACTTCTCCCCG
CGCCTGATGCATCACTTAACTTTTCCGCTTTGTTTCAAGACTTAGAGCCC
AGAGCACCATTTTTGACATCGAACTATTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:244549..245928+

>Ggra2425.t1 ID=Ggra2425.t1|Name=Ggra2425.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1380bp|location=Sequence derived from alignment at tig00000005_pilon:244549..245928+ (Gracilaria gracilis GNS1m male)
ATGGGCACTTCCGCTGTCGAATGGAACCGCGACCTGCTCACGCGTCTCCT
TCACGCAATCGTGCTATCGCGCGGCTCGCTCACGCTTGCTGCCGCGTTGC
TACCCGACCTCTCCACCGGCGCTATCCGCAAGGCCCTTCGCCAAATTTCG
CTTGCACATCGTAATCCTTCATCGTGGTCCGACGCCAAGCATACTACGTT
CGTGGTGCATCGCGTCGCGAACCACTCCATGCCTCCAGCAACGCCTCCAC
CGGCGGCACCGCCCGCTTCCACTGTCCCCAAGCGTGTTGTGCTGCAACTC
GTCCCGGCCTCAAAGCGTGACGCTGCCATAGTGCGTGCTGGAAACCATCA
CCCGTTTCTGGAACTCAAGCTGCGTCCTCGACGACCATTATGGGATGTAT
ATGCGCACGTCTACACAAAGTGGCGTTTACCGATCGGTTTGCTCACTCTC
AATCATCTCAGCATTCACACTTCTGTGGCTTCTATCCTTCCACAAGGCTC
TGCGCTAGTGCGTCTGCAGTACAACGTAATCAACCTTCCTGTCGATTTCT
CAGCGCTTTCATGTTTTCTACCGACCGATCATCAACCACACCCTCCCACC
AAGCAACTACTAACTACAGACACCGACGATCATTTCTGGACTGAGAACAC
TGCCTCACACCTTCCGATTCTGGATTTTGGTTCTGATTCTCTCTTCAACC
TCTCGTCAAACCATATCGATTCACATCCTCCGCCCCCAGAATCCTGCACA
CCATTCATGAAGAATCGTCGCGTCGTCGCACCTCTCTCACTACGTCCGCA
TCTCCATCCTCAAAAGAAGAAGCCGAGCAGGGCTCGAACACGGCCTACTC
CGCCTCATAACAAGTCAATCGTTCCGCTGCCGTCAGCACGTCCCACCATA
CAAAAGGTGCAGAACAATGGCGAAAAAGCTGTTTTGAGTCGTCTGCGCTC
TCACTTGGAACAGCTTTCATCCAAGCCGTCGGAACCTGCTGAAACCACTA
ATACAGACATGCCCGTGCCGACTTGTACCGTTGGTGCTGATACTAACAAT
CTTAACTTATCGCTTCTGGCTGCATCTGATTCAATGTTCGCCATGGGGCT
ATCGACCCCTTTGCAACAATCTGTCATCAACGAAGATGCGAATGAAGCTG
AACATGGTACTGCTACTGGCGTTCAACTTGGGCACGAAGCCATTGATCTA
ATGGTGCGCGATGAGTTGGCCGTTGATCTTAATCATGTGACTCACTTCAA
CGCTCAGCAATTGGCTGCCACGGAAGCAGAACGTGCCACACTTCTCCCCG
CGCCTGATGCATCACTTAACTTTTCCGCTTTGTTTCAAGACTTAGAGCCC
AGAGCACCATTTTTGACATCGAACTATTGA