Ggra2419.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2419.t1
Unique Name	Ggra2419.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	768

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:226278..228581 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005847419.1
PFAMs	2OG-FeII_Oxy_3
Max annot lvl	3041\|Chlorophyta
Evalue	1.12e-15
EggNOG OGs	2C14X@1\|root,2S2NY@2759\|Eukaryota,37V9W@33090\|Viridiplantae,34M6R@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2419	Ggra2419	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 226278..228581 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2419.t1.stop1	Ggra2419.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 226278..226280 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2419.t1.CDS1	Ggra2419.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 226278..228581 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2419.t1.exon1	Ggra2419.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 226278..228581 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2419.t1.start1	Ggra2419.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 228579..228581 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2419.t1	Ggra2419.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 226278..228581 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:226278..228581-
coding sequence from alignment at tig00000005_pilon:226278..228581-

mRNA sequence

>Ggra2419.t1 ID=Ggra2419.t1|Name=Ggra2419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=768bp
MIWPDFLRTQLDRTLTDAPRRYADAASVHNHPFSHIRVAHVGPVALPLQP
AQLSTLSAADQLELLPASRFDHQQPPITCLHIAAQHVQLSIEQQSAISNL
TREVVSRLDVSPFGVRAKLDKLVVYGNHHAHDAYSARQTHTQAEPDAFAN
LIVQLPSSYCGAQIRVHHQGQTQHFNMSNSSQRKLHWAIFFSHCECERLP
VTSGLCVCLIYKVVRSAPGPLPNFESRCHVSYMLKEAAALWEAMPEKIRP
KFLALKLENHYGQDELSFAKLQGVDAKRALQLQSSDKYVMFLVLVEKRDC
GVLPKNPGGLYVYMSPSGENAVQNRKSFSPIHRMKEVQESNVEVKKLIKE
TNRELQHIYLDDPDFWEDHPICDKQHFLNNKGLFEDSKPYAESYDPFPAK
VIPPLTFTYREAALIFWPRTHHADFFCAQSFDAGAKYAVQAFENKDPDAR
IILDQVIAYGKRVTLNDNDGALRLLELACANTDEKVAICALEFMVRVKSD
ATFEERFPFCQEDMGCSSAAHAEAFLKAISTFNWEPIRDPMLVAIKVTPS
DCFNHCLVLAHSVPTEHRFSQARSDIRKVLAQSVLSKSLSERCIPEAANL
VFSFPSLVSQQRKFLRTLKNYSVERMALLLEELNHLVLQDGAECGAAAVF
VRLVPVFISKDLVASGDGSKKESRKMFSSYVSMCRSAENRGKLRYSSSSA
LVFSLLVDSRTLNEDLLRQFVHAALASRRKKLVSILVQLIPNETSTNSNV
NELFDSLKSFHRLNRPE*

spliced messenger RNA

>Ggra2419.t1 ID=Ggra2419.t1|Name=Ggra2419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00000005_pilon:226278..228581- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGGCCCGATTTTCTTCGCACCCAACTTGATCGAACCTTGACTGA
CGCCCCGCGTCGATATGCCGATGCCGCATCTGTTCACAACCACCCGTTCT
CCCACATTAGAGTCGCTCACGTGGGACCCGTCGCACTGCCATTGCAACCA
GCTCAACTGTCAACCCTCAGCGCCGCTGACCAGCTTGAGCTTCTCCCCGC
ATCACGCTTTGATCATCAACAACCGCCCATTACCTGTCTCCACATCGCTG
CCCAACACGTTCAGCTTAGCATAGAACAGCAATCCGCCATTTCTAATCTG
ACTCGCGAGGTAGTTTCGCGTCTTGACGTAAGCCCCTTCGGCGTGCGTGC
CAAACTTGACAAGCTGGTCGTATACGGCAACCATCATGCTCATGATGCCT
ACTCTGCACGTCAGACACACACACAAGCTGAACCGGATGCCTTTGCTAAC
TTGATTGTTCAATTGCCATCCTCGTATTGCGGCGCTCAAATTCGTGTTCA
CCATCAGGGACAAACTCAACACTTCAATATGAGCAATAGCAGTCAGCGCA
AGCTTCACTGGGCCATCTTTTTTAGTCACTGTGAATGCGAACGGCTTCCT
GTCACCTCTGGTCTGTGTGTGTGTTTGATCTACAAAGTAGTTCGCTCAGC
ACCAGGCCCACTTCCAAACTTTGAAAGCCGATGCCATGTATCTTATATGC
TCAAGGAAGCAGCTGCATTGTGGGAAGCGATGCCTGAAAAAATACGTCCC
AAGTTCCTAGCGCTTAAATTGGAAAACCATTATGGCCAAGACGAACTCTC
ATTCGCCAAATTGCAAGGCGTTGATGCAAAACGCGCTCTTCAGTTGCAGA
GTAGTGACAAGTACGTCATGTTTCTCGTTTTGGTAGAAAAACGCGACTGT
GGTGTACTACCAAAAAACCCTGGCGGACTATACGTTTACATGTCCCCTTC
TGGCGAAAATGCTGTTCAGAACCGCAAGAGTTTTTCACCGATCCATCGAA
TGAAAGAAGTCCAAGAATCAAATGTTGAAGTTAAGAAGCTTATCAAAGAA
ACCAATCGCGAACTGCAACATATATATCTGGATGACCCTGACTTTTGGGA
GGACCACCCGATCTGCGATAAGCAGCATTTCCTCAACAACAAAGGACTTT
TTGAAGATTCAAAGCCATACGCAGAATCTTATGACCCTTTCCCGGCAAAG
GTAATACCTCCCTTGACATTTACATATCGTGAAGCTGCGCTTATTTTCTG
GCCTCGTACTCATCATGCGGACTTCTTCTGTGCGCAGAGTTTTGATGCGG
GAGCCAAGTATGCGGTTCAGGCCTTTGAAAACAAAGATCCTGACGCTCGT
ATCATACTTGATCAAGTTATAGCATACGGAAAGCGTGTCACTTTGAATGA
TAATGATGGTGCGCTTAGATTGCTAGAACTAGCCTGCGCTAACACAGACG
AAAAGGTAGCCATATGTGCTCTGGAGTTCATGGTTCGGGTCAAAAGTGAT
GCTACCTTCGAAGAACGCTTCCCGTTTTGCCAAGAAGATATGGGGTGTTC
GTCCGCGGCACATGCCGAGGCTTTCCTAAAAGCAATATCCACCTTCAATT
GGGAACCCATTCGTGACCCAATGCTGGTCGCTATCAAAGTTACACCGTCA
GACTGTTTCAATCACTGTCTTGTTCTGGCTCACAGTGTACCGACTGAGCA
CCGTTTTTCCCAAGCTAGAAGTGATATTCGAAAAGTATTGGCACAGTCCG
TTCTTTCGAAATCTTTATCAGAACGATGTATACCAGAGGCTGCCAACTTG
GTGTTCTCGTTCCCTTCCCTTGTATCACAACAACGAAAGTTTCTAAGGAC
CCTTAAAAATTACTCAGTGGAACGGATGGCCCTCCTTCTTGAAGAGCTGA
ATCATTTGGTACTCCAAGACGGTGCAGAATGCGGAGCTGCAGCAGTGTTT
GTTCGACTGGTCCCAGTATTCATATCGAAAGATCTTGTTGCATCTGGGGA
CGGTTCGAAGAAAGAGTCGAGAAAAATGTTCAGTTCTTACGTGTCAATGT
GCCGTTCCGCTGAGAATAGGGGGAAATTACGCTATTCTTCCTCGAGTGCG
TTAGTTTTCTCTCTATTGGTGGATAGCAGAACATTGAACGAAGATCTCTT
GAGACAGTTTGTTCATGCGGCTCTTGCCTCAAGGAGAAAGAAGCTTGTGA
GCATTTTGGTTCAACTAATACCGAACGAGACATCGACGAACTCGAATGTG
AACGAATTATTTGACTCGCTCAAGTCGTTTCACCGTCTAAACCGTCCTGA
ATAG

protein sequence of Ggra2419.t1

>Ggra2419.t1 ID=Ggra2419.t1|Name=Ggra2419.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=768bp
MIWPDFLRTQLDRTLTDAPRRYADAASVHNHPFSHIRVAHVGPVALPLQP
AQLSTLSAADQLELLPASRFDHQQPPITCLHIAAQHVQLSIEQQSAISNL
TREVVSRLDVSPFGVRAKLDKLVVYGNHHAHDAYSARQTHTQAEPDAFAN
LIVQLPSSYCGAQIRVHHQGQTQHFNMSNSSQRKLHWAIFFSHCECERLP
VTSGLCVCLIYKVVRSAPGPLPNFESRCHVSYMLKEAAALWEAMPEKIRP
KFLALKLENHYGQDELSFAKLQGVDAKRALQLQSSDKYVMFLVLVEKRDC
GVLPKNPGGLYVYMSPSGENAVQNRKSFSPIHRMKEVQESNVEVKKLIKE
TNRELQHIYLDDPDFWEDHPICDKQHFLNNKGLFEDSKPYAESYDPFPAK
VIPPLTFTYREAALIFWPRTHHADFFCAQSFDAGAKYAVQAFENKDPDAR
IILDQVIAYGKRVTLNDNDGALRLLELACANTDEKVAICALEFMVRVKSD
ATFEERFPFCQEDMGCSSAAHAEAFLKAISTFNWEPIRDPMLVAIKVTPS
DCFNHCLVLAHSVPTEHRFSQARSDIRKVLAQSVLSKSLSERCIPEAANL
VFSFPSLVSQQRKFLRTLKNYSVERMALLLEELNHLVLQDGAECGAAAVF
VRLVPVFISKDLVASGDGSKKESRKMFSSYVSMCRSAENRGKLRYSSSSA
LVFSLLVDSRTLNEDLLRQFVHAALASRRKKLVSILVQLIPNETSTNSNV
NELFDSLKSFHRLNRPE*

mRNA from alignment at tig00000005_pilon:226278..228581-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2419.t1 ID=Ggra2419.t1|Name=Ggra2419.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00000005_pilon:226278..228581- (Gracilaria gracilis GNS1m male)
ATGATTTGGCCCGATTTTCTTCGCACCCAACTTGATCGAACCTTGACTGA
CGCCCCGCGTCGATATGCCGATGCCGCATCTGTTCACAACCACCCGTTCT
CCCACATTAGAGTCGCTCACGTGGGACCCGTCGCACTGCCATTGCAACCA
GCTCAACTGTCAACCCTCAGCGCCGCTGACCAGCTTGAGCTTCTCCCCGC
ATCACGCTTTGATCATCAACAACCGCCCATTACCTGTCTCCACATCGCTG
CCCAACACGTTCAGCTTAGCATAGAACAGCAATCCGCCATTTCTAATCTG
ACTCGCGAGGTAGTTTCGCGTCTTGACGTAAGCCCCTTCGGCGTGCGTGC
CAAACTTGACAAGCTGGTCGTATACGGCAACCATCATGCTCATGATGCCT
ACTCTGCACGTCAGACACACACACAAGCTGAACCGGATGCCTTTGCTAAC
TTGATTGTTCAATTGCCATCCTCGTATTGCGGCGCTCAAATTCGTGTTCA
CCATCAGGGACAAACTCAACACTTCAATATGAGCAATAGCAGTCAGCGCA
AGCTTCACTGGGCCATCTTTTTTAGTCACTGTGAATGCGAACGGCTTCCT
GTCACCTCTGGTCTGTGTGTGTGTTTGATCTACAAAGTAGTTCGCTCAGC
ACCAGGCCCACTTCCAAACTTTGAAAGCCGATGCCATGTATCTTATATGC
TCAAGGAAGCAGCTGCATTGTGGGAAGCGATGCCTGAAAAAATACGTCCC
AAGTTCCTAGCGCTTAAATTGGAAAACCATTATGGCCAAGACGAACTCTC
ATTCGCCAAATTGCAAGGCGTTGATGCAAAACGCGCTCTTCAGTTGCAGA
GTAGTGACAAGTACGTCATGTTTCTCGTTTTGGTAGAAAAACGCGACTGT
GGTGTACTACCAAAAAACCCTGGCGGACTATACGTTTACATGTCCCCTTC
TGGCGAAAATGCTGTTCAGAACCGCAAGAGTTTTTCACCGATCCATCGAA
TGAAAGAAGTCCAAGAATCAAATGTTGAAGTTAAGAAGCTTATCAAAGAA
ACCAATCGCGAACTGCAACATATATATCTGGATGACCCTGACTTTTGGGA
GGACCACCCGATCTGCGATAAGCAGCATTTCCTCAACAACAAAGGACTTT
TTGAAGATTCAAAGCCATACGCAGAATCTTATGACCCTTTCCCGGCAAAG
GTAATACCTCCCTTGACATTTACATATCGTGAAGCTGCGCTTATTTTCTG
GCCTCGTACTCATCATGCGGACTTCTTCTGTGCGCAGAGTTTTGATGCGG
GAGCCAAGTATGCGGTTCAGGCCTTTGAAAACAAAGATCCTGACGCTCGT
ATCATACTTGATCAAGTTATAGCATACGGAAAGCGTGTCACTTTGAATGA
TAATGATGGTGCGCTTAGATTGCTAGAACTAGCCTGCGCTAACACAGACG
AAAAGGTAGCCATATGTGCTCTGGAGTTCATGGTTCGGGTCAAAAGTGAT
GCTACCTTCGAAGAACGCTTCCCGTTTTGCCAAGAAGATATGGGGTGTTC
GTCCGCGGCACATGCCGAGGCTTTCCTAAAAGCAATATCCACCTTCAATT
GGGAACCCATTCGTGACCCAATGCTGGTCGCTATCAAAGTTACACCGTCA
GACTGTTTCAATCACTGTCTTGTTCTGGCTCACAGTGTACCGACTGAGCA
CCGTTTTTCCCAAGCTAGAAGTGATATTCGAAAAGTATTGGCACAGTCCG
TTCTTTCGAAATCTTTATCAGAACGATGTATACCAGAGGCTGCCAACTTG
GTGTTCTCGTTCCCTTCCCTTGTATCACAACAACGAAAGTTTCTAAGGAC
CCTTAAAAATTACTCAGTGGAACGGATGGCCCTCCTTCTTGAAGAGCTGA
ATCATTTGGTACTCCAAGACGGTGCAGAATGCGGAGCTGCAGCAGTGTTT
GTTCGACTGGTCCCAGTATTCATATCGAAAGATCTTGTTGCATCTGGGGA
CGGTTCGAAGAAAGAGTCGAGAAAAATGTTCAGTTCTTACGTGTCAATGT
GCCGTTCCGCTGAGAATAGGGGGAAATTACGCTATTCTTCCTCGAGTGCG
TTAGTTTTCTCTCTATTGGTGGATAGCAGAACATTGAACGAAGATCTCTT
GAGACAGTTTGTTCATGCGGCTCTTGCCTCAAGGAGAAAGAAGCTTGTGA
GCATTTTGGTTCAACTAATACCGAACGAGACATCGACGAACTCGAATGTG
AACGAATTATTTGACTCGCTCAAGTCGTTTCACCGTCTAAACCGTCCTGA
ATAG

Coding sequence (CDS) from alignment at tig00000005_pilon:226278..228581-

>Ggra2419.t1 ID=Ggra2419.t1|Name=Ggra2419.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2304bp|location=Sequence derived from alignment at tig00000005_pilon:226278..228581- (Gracilaria gracilis GNS1m male)
ATGATTTGGCCCGATTTTCTTCGCACCCAACTTGATCGAACCTTGACTGA
CGCCCCGCGTCGATATGCCGATGCCGCATCTGTTCACAACCACCCGTTCT
CCCACATTAGAGTCGCTCACGTGGGACCCGTCGCACTGCCATTGCAACCA
GCTCAACTGTCAACCCTCAGCGCCGCTGACCAGCTTGAGCTTCTCCCCGC
ATCACGCTTTGATCATCAACAACCGCCCATTACCTGTCTCCACATCGCTG
CCCAACACGTTCAGCTTAGCATAGAACAGCAATCCGCCATTTCTAATCTG
ACTCGCGAGGTAGTTTCGCGTCTTGACGTAAGCCCCTTCGGCGTGCGTGC
CAAACTTGACAAGCTGGTCGTATACGGCAACCATCATGCTCATGATGCCT
ACTCTGCACGTCAGACACACACACAAGCTGAACCGGATGCCTTTGCTAAC
TTGATTGTTCAATTGCCATCCTCGTATTGCGGCGCTCAAATTCGTGTTCA
CCATCAGGGACAAACTCAACACTTCAATATGAGCAATAGCAGTCAGCGCA
AGCTTCACTGGGCCATCTTTTTTAGTCACTGTGAATGCGAACGGCTTCCT
GTCACCTCTGGTCTGTGTGTGTGTTTGATCTACAAAGTAGTTCGCTCAGC
ACCAGGCCCACTTCCAAACTTTGAAAGCCGATGCCATGTATCTTATATGC
TCAAGGAAGCAGCTGCATTGTGGGAAGCGATGCCTGAAAAAATACGTCCC
AAGTTCCTAGCGCTTAAATTGGAAAACCATTATGGCCAAGACGAACTCTC
ATTCGCCAAATTGCAAGGCGTTGATGCAAAACGCGCTCTTCAGTTGCAGA
GTAGTGACAAGTACGTCATGTTTCTCGTTTTGGTAGAAAAACGCGACTGT
GGTGTACTACCAAAAAACCCTGGCGGACTATACGTTTACATGTCCCCTTC
TGGCGAAAATGCTGTTCAGAACCGCAAGAGTTTTTCACCGATCCATCGAA
TGAAAGAAGTCCAAGAATCAAATGTTGAAGTTAAGAAGCTTATCAAAGAA
ACCAATCGCGAACTGCAACATATATATCTGGATGACCCTGACTTTTGGGA
GGACCACCCGATCTGCGATAAGCAGCATTTCCTCAACAACAAAGGACTTT
TTGAAGATTCAAAGCCATACGCAGAATCTTATGACCCTTTCCCGGCAAAG
GTAATACCTCCCTTGACATTTACATATCGTGAAGCTGCGCTTATTTTCTG
GCCTCGTACTCATCATGCGGACTTCTTCTGTGCGCAGAGTTTTGATGCGG
GAGCCAAGTATGCGGTTCAGGCCTTTGAAAACAAAGATCCTGACGCTCGT
ATCATACTTGATCAAGTTATAGCATACGGAAAGCGTGTCACTTTGAATGA
TAATGATGGTGCGCTTAGATTGCTAGAACTAGCCTGCGCTAACACAGACG
AAAAGGTAGCCATATGTGCTCTGGAGTTCATGGTTCGGGTCAAAAGTGAT
GCTACCTTCGAAGAACGCTTCCCGTTTTGCCAAGAAGATATGGGGTGTTC
GTCCGCGGCACATGCCGAGGCTTTCCTAAAAGCAATATCCACCTTCAATT
GGGAACCCATTCGTGACCCAATGCTGGTCGCTATCAAAGTTACACCGTCA
GACTGTTTCAATCACTGTCTTGTTCTGGCTCACAGTGTACCGACTGAGCA
CCGTTTTTCCCAAGCTAGAAGTGATATTCGAAAAGTATTGGCACAGTCCG
TTCTTTCGAAATCTTTATCAGAACGATGTATACCAGAGGCTGCCAACTTG
GTGTTCTCGTTCCCTTCCCTTGTATCACAACAACGAAAGTTTCTAAGGAC
CCTTAAAAATTACTCAGTGGAACGGATGGCCCTCCTTCTTGAAGAGCTGA
ATCATTTGGTACTCCAAGACGGTGCAGAATGCGGAGCTGCAGCAGTGTTT
GTTCGACTGGTCCCAGTATTCATATCGAAAGATCTTGTTGCATCTGGGGA
CGGTTCGAAGAAAGAGTCGAGAAAAATGTTCAGTTCTTACGTGTCAATGT
GCCGTTCCGCTGAGAATAGGGGGAAATTACGCTATTCTTCCTCGAGTGCG
TTAGTTTTCTCTCTATTGGTGGATAGCAGAACATTGAACGAAGATCTCTT
GAGACAGTTTGTTCATGCGGCTCTTGCCTCAAGGAGAAAGAAGCTTGTGA
GCATTTTGGTTCAACTAATACCGAACGAGACATCGACGAACTCGAATGTG
AACGAATTATTTGACTCGCTCAAGTCGTTTCACCGTCTAAACCGTCCTGA
ATAG