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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005702872.1 |
| Preferred name | LSS |
| PFAMs | SQHop_cyclase_C,SQHop_cyclase_N |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00874,RC01582,RC02604 |
| KEGG ko | ko:K01852,ko:K01853,ko:K15811 |
| KEGG Reaction | R03199,R03200,R09689 |
| KEGG Pathway | ko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130 |
| KEGG Module | M00101 |
| GOs | GO:0000250,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006066,GO:0006629,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006721,GO:0006722,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008299,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0010685,GO:0010686,GO:0012505,GO:0016020,GO:0016104,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016853,GO:0016866,GO:0019216,GO:0019218,GO:0019222,GO:0019748,GO:0031559,GO:0031647,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090181,GO:0097384,GO:0098827,GO:0106118,GO:1900579,GO:1900581,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930 |
| Evalue | 1.19e-282 |
| EggNOG OGs | COG1657@1|root,KOG0497@2759|Eukaryota |
| EC | 5.4.99.32,5.4.99.7,5.4.99.8 |
| Description | oxidosqualene cyclase activity |
| COG category | I |
| BiGG Reaction | iMM904.YHR072W,iND750.YHR072W |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2418.t1.stop1 | Ggra2418.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000005_pilon 223546..223548 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2418.t1.start1 | Ggra2418.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000005_pilon 225775..225777 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp MGAVEGESDMWMLRFERGRQWWEPNGPQDESHLKDLKEAQTNFASNRQKT SHSSDRVLRLLGAHGLIEGNPTLGRIEPVPGHIAGDPVSVAIHKGIAYFA TLQCGDGHWAGDYAGPMFLMPGMIIACYVTKTPLHPSQKREMIRYLRNHQ NKDGGFGLHIEHKSIMFGTGLNYVALRLLGVGPDDPDAVRARQWILDHGG AGGIPGWGKFWLSVLGVYDWEGVDPLTPEFWLMPYAIPMHPARFWCHCRV VYLPMSYLYGRKAVGETTNLIKDIREELYGEPYSEINWASFRGKCCEEDV YVKRPYLQRLLWGALVIFEKTWFPFKKVLRQKALQETLELVKGEDRFSKH IDIGPVNKVINFLCVWFDNPNSEEVSKHRDRLKDYLWLAEDGMKMQGYNG SQLWDTAFTSQAFMTAGEEILRPFVRTLSLAHDYIRITQVREDVPNRERY YRHPSKGAWPFSTRDHGWPIADCTGEGLAASLLLQGEEGSWIPKTQCISL ERLADAAEMILSYQNEDGGWATYELTRGPRWLEYLNPSEVFGDIMIDYSY VECSASAMKGLGEFRKAYPNHPLRPRIDRSVERGIKFIESIQREDGSWYG SWGVCFLYAFWFAMDAYSSVGLTPDSSSSMRRACEFILSKQKEDGSWGES YLSSEQLVYVQSKHGLVVSTGWALVALSMARWFNKEPLEKAAQFLIRSQE ENGDWPQQNICGVFNKNCMISYSQYRNIFPIWALSEYRRYCTS* back to topspliced messenger RNA >Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2232bp|location=Sequence derived from alignment at tig00000005_pilon:223546..225777- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGGCTGTCGAAGGCGAATCGGATATGTGGATGCTCCGCTTCGAAAG AGGGAGGCAGTGGTGGGAACCTAATGGACCCCAAGACGAGAGCCACCTCA AGGACTTGAAAGAAGCGCAAACGAACTTTGCTAGCAATCGTCAGAAAACG AGTCATTCCTCAGATCGCGTTCTTCGTTTGCTCGGTGCTCATGGTTTGAT CGAAGGTAATCCTACCCTTGGAAGAATCGAACCAGTCCCTGGTCATATCG CAGGCGATCCTGTGTCTGTAGCAATTCACAAAGGTATCGCATATTTTGCA ACGCTTCAGTGTGGAGATGGACATTGGGCAGGTGACTATGCTGGACCGAT GTTCCTCATGCCTGGTATGATTATAGCATGTTATGTGACCAAGACACCTT TGCATCCCTCACAAAAGCGTGAAATGATCCGTTATTTACGAAACCATCAG AACAAAGATGGTGGTTTCGGTTTGCATATCGAACATAAGTCAATAATGTT TGGGACGGGACTCAATTATGTTGCCCTGAGGCTGCTAGGAGTAGGCCCTG ATGACCCTGATGCGGTGCGTGCGAGACAATGGATCCTAGACCATGGTGGA GCAGGGGGAATCCCCGGTTGGGGAAAGTTCTGGCTGTCGGTCTTGGGCGT CTACGATTGGGAGGGCGTGGATCCGTTAACACCAGAGTTCTGGCTGATGC CATATGCAATTCCAATGCACCCGGCTCGGTTTTGGTGTCATTGTAGAGTG GTTTACCTTCCTATGAGCTATTTGTATGGTAGGAAAGCTGTCGGTGAGAC GACAAACCTCATCAAAGATATTCGAGAAGAATTGTACGGAGAGCCGTATA GCGAGATAAACTGGGCAAGTTTCAGGGGAAAGTGTTGCGAAGAAGATGTC TACGTGAAGAGGCCGTATCTCCAAAGACTGTTGTGGGGTGCTCTCGTTAT CTTTGAGAAAACATGGTTTCCGTTCAAGAAAGTATTGAGGCAAAAAGCGC TGCAGGAAACACTTGAGCTTGTCAAAGGAGAAGATCGATTTTCTAAGCAC ATCGATATCGGTCCGGTCAATAAGGTTATTAACTTCCTTTGCGTCTGGTT TGATAACCCCAATAGTGAAGAGGTGTCAAAACACCGTGACAGACTGAAGG ATTATCTGTGGCTTGCTGAAGATGGGATGAAAATGCAGGGATATAATGGT TCTCAACTTTGGGACACCGCGTTCACCAGTCAAGCTTTCATGACGGCCGG GGAAGAAATCCTACGTCCTTTTGTCAGAACATTGTCGCTAGCTCATGATT ATATCAGAATCACGCAAGTCAGAGAGGATGTTCCCAATCGCGAAAGATAT TACCGACATCCAAGCAAAGGGGCATGGCCTTTCAGCACAAGAGATCATGG TTGGCCAATTGCAGATTGCACTGGAGAAGGGCTAGCAGCGTCGTTACTCT TGCAAGGTGAGGAAGGGTCGTGGATTCCAAAAACTCAGTGCATATCGTTA GAACGACTTGCAGACGCTGCCGAAATGATTCTCAGTTACCAAAATGAAGA TGGTGGTTGGGCTACCTATGAGCTTACTCGTGGTCCCAGATGGCTCGAGT ATCTAAATCCGTCTGAAGTGTTCGGAGATATCATGATTGATTACTCCTAT GTTGAATGCTCTGCTTCAGCCATGAAAGGTTTGGGGGAGTTTCGGAAAGC TTACCCTAACCATCCGTTGAGGCCCAGAATCGACAGATCAGTCGAAAGAG GAATCAAGTTTATTGAGTCCATTCAAAGGGAAGATGGCTCATGGTATGGA AGCTGGGGGGTTTGCTTTCTGTATGCGTTCTGGTTTGCAATGGACGCGTA CTCTTCTGTTGGGCTCACACCTGACTCGAGTAGTTCTATGCGACGGGCAT GTGAATTTATTTTGAGCAAACAGAAGGAAGACGGTAGCTGGGGAGAGAGC TATCTCAGTTCTGAACAATTGGTCTATGTGCAGTCAAAACATGGGCTTGT TGTTAGTACGGGTTGGGCGCTAGTGGCATTAAGCATGGCGAGATGGTTTA ACAAGGAGCCACTGGAGAAGGCTGCGCAGTTTCTCATTCGCTCGCAAGAA GAAAATGGAGACTGGCCACAGCAAAACATCTGTGGTGTCTTTAACAAGAA CTGTATGATATCATATTCCCAATACCGTAACATCTTTCCAATTTGGGCTC TTTCTGAATATCGAAGGTATTGTACATCATGA back to topprotein sequence of Ggra2418.t1 >Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=744bp
MGAVEGESDMWMLRFERGRQWWEPNGPQDESHLKDLKEAQTNFASNRQKT SHSSDRVLRLLGAHGLIEGNPTLGRIEPVPGHIAGDPVSVAIHKGIAYFA TLQCGDGHWAGDYAGPMFLMPGMIIACYVTKTPLHPSQKREMIRYLRNHQ NKDGGFGLHIEHKSIMFGTGLNYVALRLLGVGPDDPDAVRARQWILDHGG AGGIPGWGKFWLSVLGVYDWEGVDPLTPEFWLMPYAIPMHPARFWCHCRV VYLPMSYLYGRKAVGETTNLIKDIREELYGEPYSEINWASFRGKCCEEDV YVKRPYLQRLLWGALVIFEKTWFPFKKVLRQKALQETLELVKGEDRFSKH IDIGPVNKVINFLCVWFDNPNSEEVSKHRDRLKDYLWLAEDGMKMQGYNG SQLWDTAFTSQAFMTAGEEILRPFVRTLSLAHDYIRITQVREDVPNRERY YRHPSKGAWPFSTRDHGWPIADCTGEGLAASLLLQGEEGSWIPKTQCISL ERLADAAEMILSYQNEDGGWATYELTRGPRWLEYLNPSEVFGDIMIDYSY VECSASAMKGLGEFRKAYPNHPLRPRIDRSVERGIKFIESIQREDGSWYG SWGVCFLYAFWFAMDAYSSVGLTPDSSSSMRRACEFILSKQKEDGSWGES YLSSEQLVYVQSKHGLVVSTGWALVALSMARWFNKEPLEKAAQFLIRSQE ENGDWPQQNICGVFNKNCMISYSQYRNIFPIWALSEYRRYCTS* back to topmRNA from alignment at tig00000005_pilon:223546..225777- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2232bp|location=Sequence derived from alignment at tig00000005_pilon:223546..225777- (Gracilaria gracilis GNS1m male) ATGGGGGCTGTCGAAGGCGAATCGGATATGTGGATGCTCCGCTTCGAAAG
AGGGAGGCAGTGGTGGGAACCTAATGGACCCCAAGACGAGAGCCACCTCA
AGGACTTGAAAGAAGCGCAAACGAACTTTGCTAGCAATCGTCAGAAAACG
AGTCATTCCTCAGATCGCGTTCTTCGTTTGCTCGGTGCTCATGGTTTGAT
CGAAGGTAATCCTACCCTTGGAAGAATCGAACCAGTCCCTGGTCATATCG
CAGGCGATCCTGTGTCTGTAGCAATTCACAAAGGTATCGCATATTTTGCA
ACGCTTCAGTGTGGAGATGGACATTGGGCAGGTGACTATGCTGGACCGAT
GTTCCTCATGCCTGGTATGATTATAGCATGTTATGTGACCAAGACACCTT
TGCATCCCTCACAAAAGCGTGAAATGATCCGTTATTTACGAAACCATCAG
AACAAAGATGGTGGTTTCGGTTTGCATATCGAACATAAGTCAATAATGTT
TGGGACGGGACTCAATTATGTTGCCCTGAGGCTGCTAGGAGTAGGCCCTG
ATGACCCTGATGCGGTGCGTGCGAGACAATGGATCCTAGACCATGGTGGA
GCAGGGGGAATCCCCGGTTGGGGAAAGTTCTGGCTGTCGGTCTTGGGCGT
CTACGATTGGGAGGGCGTGGATCCGTTAACACCAGAGTTCTGGCTGATGC
CATATGCAATTCCAATGCACCCGGCTCGGTTTTGGTGTCATTGTAGAGTG
GTTTACCTTCCTATGAGCTATTTGTATGGTAGGAAAGCTGTCGGTGAGAC
GACAAACCTCATCAAAGATATTCGAGAAGAATTGTACGGAGAGCCGTATA
GCGAGATAAACTGGGCAAGTTTCAGGGGAAAGTGTTGCGAAGAAGATGTC
TACGTGAAGAGGCCGTATCTCCAAAGACTGTTGTGGGGTGCTCTCGTTAT
CTTTGAGAAAACATGGTTTCCGTTCAAGAAAGTATTGAGGCAAAAAGCGC
TGCAGGAAACACTTGAGCTTGTCAAAGGAGAAGATCGATTTTCTAAGCAC
ATCGATATCGGTCCGGTCAATAAGGTTATTAACTTCCTTTGCGTCTGGTT
TGATAACCCCAATAGTGAAGAGGTGTCAAAACACCGTGACAGACTGAAGG
ATTATCTGTGGCTTGCTGAAGATGGGATGAAAATGCAGGGATATAATGGT
TCTCAACTTTGGGACACCGCGTTCACCAGTCAAGCTTTCATGACGGCCGG
GGAAGAAATCCTACGTCCTTTTGTCAGAACATTGTCGCTAGCTCATGATT
ATATCAGAATCACGCAAGTCAGAGAGGATGTTCCCAATCGCGAAAGATAT
TACCGACATCCAAGCAAAGGGGCATGGCCTTTCAGCACAAGAGATCATGG
TTGGCCAATTGCAGATTGCACTGGAGAAGGGCTAGCAGCGTCGTTACTCT
TGCAAGGTGAGGAAGGGTCGTGGATTCCAAAAACTCAGTGCATATCGTTA
GAACGACTTGCAGACGCTGCCGAAATGATTCTCAGTTACCAAAATGAAGA
TGGTGGTTGGGCTACCTATGAGCTTACTCGTGGTCCCAGATGGCTCGAGT
ATCTAAATCCGTCTGAAGTGTTCGGAGATATCATGATTGATTACTCCTAT
GTTGAATGCTCTGCTTCAGCCATGAAAGGTTTGGGGGAGTTTCGGAAAGC
TTACCCTAACCATCCGTTGAGGCCCAGAATCGACAGATCAGTCGAAAGAG
GAATCAAGTTTATTGAGTCCATTCAAAGGGAAGATGGCTCATGGTATGGA
AGCTGGGGGGTTTGCTTTCTGTATGCGTTCTGGTTTGCAATGGACGCGTA
CTCTTCTGTTGGGCTCACACCTGACTCGAGTAGTTCTATGCGACGGGCAT
GTGAATTTATTTTGAGCAAACAGAAGGAAGACGGTAGCTGGGGAGAGAGC
TATCTCAGTTCTGAACAATTGGTCTATGTGCAGTCAAAACATGGGCTTGT
TGTTAGTACGGGTTGGGCGCTAGTGGCATTAAGCATGGCGAGATGGTTTA
ACAAGGAGCCACTGGAGAAGGCTGCGCAGTTTCTCATTCGCTCGCAAGAA
GAAAATGGAGACTGGCCACAGCAAAACATCTGTGGTGTCTTTAACAAGAA
CTGTATGATATCATATTCCCAATACCGTAACATCTTTCCAATTTGGGCTC
TTTCTGAATATCGAAGGTATTGTACATCATGA back to topCoding sequence (CDS) from alignment at tig00000005_pilon:223546..225777- >Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2232bp|location=Sequence derived from alignment at tig00000005_pilon:223546..225777- (Gracilaria gracilis GNS1m male) ATGGGGGCTGTCGAAGGCGAATCGGATATGTGGATGCTCCGCTTCGAAAG AGGGAGGCAGTGGTGGGAACCTAATGGACCCCAAGACGAGAGCCACCTCA AGGACTTGAAAGAAGCGCAAACGAACTTTGCTAGCAATCGTCAGAAAACG AGTCATTCCTCAGATCGCGTTCTTCGTTTGCTCGGTGCTCATGGTTTGAT CGAAGGTAATCCTACCCTTGGAAGAATCGAACCAGTCCCTGGTCATATCG CAGGCGATCCTGTGTCTGTAGCAATTCACAAAGGTATCGCATATTTTGCA ACGCTTCAGTGTGGAGATGGACATTGGGCAGGTGACTATGCTGGACCGAT GTTCCTCATGCCTGGTATGATTATAGCATGTTATGTGACCAAGACACCTT TGCATCCCTCACAAAAGCGTGAAATGATCCGTTATTTACGAAACCATCAG AACAAAGATGGTGGTTTCGGTTTGCATATCGAACATAAGTCAATAATGTT TGGGACGGGACTCAATTATGTTGCCCTGAGGCTGCTAGGAGTAGGCCCTG ATGACCCTGATGCGGTGCGTGCGAGACAATGGATCCTAGACCATGGTGGA GCAGGGGGAATCCCCGGTTGGGGAAAGTTCTGGCTGTCGGTCTTGGGCGT CTACGATTGGGAGGGCGTGGATCCGTTAACACCAGAGTTCTGGCTGATGC CATATGCAATTCCAATGCACCCGGCTCGGTTTTGGTGTCATTGTAGAGTG GTTTACCTTCCTATGAGCTATTTGTATGGTAGGAAAGCTGTCGGTGAGAC GACAAACCTCATCAAAGATATTCGAGAAGAATTGTACGGAGAGCCGTATA GCGAGATAAACTGGGCAAGTTTCAGGGGAAAGTGTTGCGAAGAAGATGTC TACGTGAAGAGGCCGTATCTCCAAAGACTGTTGTGGGGTGCTCTCGTTAT CTTTGAGAAAACATGGTTTCCGTTCAAGAAAGTATTGAGGCAAAAAGCGC TGCAGGAAACACTTGAGCTTGTCAAAGGAGAAGATCGATTTTCTAAGCAC ATCGATATCGGTCCGGTCAATAAGGTTATTAACTTCCTTTGCGTCTGGTT TGATAACCCCAATAGTGAAGAGGTGTCAAAACACCGTGACAGACTGAAGG ATTATCTGTGGCTTGCTGAAGATGGGATGAAAATGCAGGGATATAATGGT TCTCAACTTTGGGACACCGCGTTCACCAGTCAAGCTTTCATGACGGCCGG GGAAGAAATCCTACGTCCTTTTGTCAGAACATTGTCGCTAGCTCATGATT ATATCAGAATCACGCAAGTCAGAGAGGATGTTCCCAATCGCGAAAGATAT TACCGACATCCAAGCAAAGGGGCATGGCCTTTCAGCACAAGAGATCATGG TTGGCCAATTGCAGATTGCACTGGAGAAGGGCTAGCAGCGTCGTTACTCT TGCAAGGTGAGGAAGGGTCGTGGATTCCAAAAACTCAGTGCATATCGTTA GAACGACTTGCAGACGCTGCCGAAATGATTCTCAGTTACCAAAATGAAGA TGGTGGTTGGGCTACCTATGAGCTTACTCGTGGTCCCAGATGGCTCGAGT ATCTAAATCCGTCTGAAGTGTTCGGAGATATCATGATTGATTACTCCTAT GTTGAATGCTCTGCTTCAGCCATGAAAGGTTTGGGGGAGTTTCGGAAAGC TTACCCTAACCATCCGTTGAGGCCCAGAATCGACAGATCAGTCGAAAGAG GAATCAAGTTTATTGAGTCCATTCAAAGGGAAGATGGCTCATGGTATGGA AGCTGGGGGGTTTGCTTTCTGTATGCGTTCTGGTTTGCAATGGACGCGTA CTCTTCTGTTGGGCTCACACCTGACTCGAGTAGTTCTATGCGACGGGCAT GTGAATTTATTTTGAGCAAACAGAAGGAAGACGGTAGCTGGGGAGAGAGC TATCTCAGTTCTGAACAATTGGTCTATGTGCAGTCAAAACATGGGCTTGT TGTTAGTACGGGTTGGGCGCTAGTGGCATTAAGCATGGCGAGATGGTTTA ACAAGGAGCCACTGGAGAAGGCTGCGCAGTTTCTCATTCGCTCGCAAGAA GAAAATGGAGACTGGCCACAGCAAAACATCTGTGGTGTCTTTAACAAGAA CTGTATGATATCATATTCCCAATACCGTAACATCTTTCCAATTTGGGCTC TTTCTGAATATCGAAGGTATTGTACATCATGA back to top
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