Ggra2418.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2418.t1
Unique NameGgra2418.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length744
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:223546..225777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702872.1
Preferred nameLSS
PFAMsSQHop_cyclase_C,SQHop_cyclase_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00874,RC01582,RC02604
KEGG koko:K01852,ko:K01853,ko:K15811
KEGG ReactionR03199,R03200,R09689
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
KEGG ModuleM00101
GOsGO:0000250,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005811,GO:0006066,GO:0006629,GO:0006694,GO:0006695,GO:0006696,GO:0006720,GO:0006721,GO:0006722,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008204,GO:0008299,GO:0008610,GO:0009058,GO:0009889,GO:0009987,GO:0010685,GO:0010686,GO:0012505,GO:0016020,GO:0016104,GO:0016114,GO:0016125,GO:0016126,GO:0016128,GO:0016129,GO:0016853,GO:0016866,GO:0019216,GO:0019218,GO:0019222,GO:0019748,GO:0031559,GO:0031647,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044107,GO:0044108,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045540,GO:0046165,GO:0046890,GO:0050789,GO:0050810,GO:0062012,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090181,GO:0097384,GO:0098827,GO:0106118,GO:1900579,GO:1900581,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
Evalue1.19e-282
EggNOG OGsCOG1657@1|root,KOG0497@2759|Eukaryota
EC5.4.99.32,5.4.99.7,5.4.99.8
Descriptionoxidosqualene cyclase activity
COG categoryI
BiGG ReactioniMM904.YHR072W,iND750.YHR072W
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2418Ggra2418Gracilaria gracilis GNS1m malegenetig00000005_pilon 223546..225777 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2418.t1.stop1Ggra2418.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 223546..223548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2418.t1.CDS1Ggra2418.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 223546..225777 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2418.t1.exon1Ggra2418.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 223546..225777 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2418.t1.start1Ggra2418.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 225775..225777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2418.t1Ggra2418.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 223546..225777 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=744bp
MGAVEGESDMWMLRFERGRQWWEPNGPQDESHLKDLKEAQTNFASNRQKT
SHSSDRVLRLLGAHGLIEGNPTLGRIEPVPGHIAGDPVSVAIHKGIAYFA
TLQCGDGHWAGDYAGPMFLMPGMIIACYVTKTPLHPSQKREMIRYLRNHQ
NKDGGFGLHIEHKSIMFGTGLNYVALRLLGVGPDDPDAVRARQWILDHGG
AGGIPGWGKFWLSVLGVYDWEGVDPLTPEFWLMPYAIPMHPARFWCHCRV
VYLPMSYLYGRKAVGETTNLIKDIREELYGEPYSEINWASFRGKCCEEDV
YVKRPYLQRLLWGALVIFEKTWFPFKKVLRQKALQETLELVKGEDRFSKH
IDIGPVNKVINFLCVWFDNPNSEEVSKHRDRLKDYLWLAEDGMKMQGYNG
SQLWDTAFTSQAFMTAGEEILRPFVRTLSLAHDYIRITQVREDVPNRERY
YRHPSKGAWPFSTRDHGWPIADCTGEGLAASLLLQGEEGSWIPKTQCISL
ERLADAAEMILSYQNEDGGWATYELTRGPRWLEYLNPSEVFGDIMIDYSY
VECSASAMKGLGEFRKAYPNHPLRPRIDRSVERGIKFIESIQREDGSWYG
SWGVCFLYAFWFAMDAYSSVGLTPDSSSSMRRACEFILSKQKEDGSWGES
YLSSEQLVYVQSKHGLVVSTGWALVALSMARWFNKEPLEKAAQFLIRSQE
ENGDWPQQNICGVFNKNCMISYSQYRNIFPIWALSEYRRYCTS*
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spliced messenger RNA

>Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2232bp|location=Sequence derived from alignment at tig00000005_pilon:223546..225777- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCTGTCGAAGGCGAATCGGATATGTGGATGCTCCGCTTCGAAAG
AGGGAGGCAGTGGTGGGAACCTAATGGACCCCAAGACGAGAGCCACCTCA
AGGACTTGAAAGAAGCGCAAACGAACTTTGCTAGCAATCGTCAGAAAACG
AGTCATTCCTCAGATCGCGTTCTTCGTTTGCTCGGTGCTCATGGTTTGAT
CGAAGGTAATCCTACCCTTGGAAGAATCGAACCAGTCCCTGGTCATATCG
CAGGCGATCCTGTGTCTGTAGCAATTCACAAAGGTATCGCATATTTTGCA
ACGCTTCAGTGTGGAGATGGACATTGGGCAGGTGACTATGCTGGACCGAT
GTTCCTCATGCCTGGTATGATTATAGCATGTTATGTGACCAAGACACCTT
TGCATCCCTCACAAAAGCGTGAAATGATCCGTTATTTACGAAACCATCAG
AACAAAGATGGTGGTTTCGGTTTGCATATCGAACATAAGTCAATAATGTT
TGGGACGGGACTCAATTATGTTGCCCTGAGGCTGCTAGGAGTAGGCCCTG
ATGACCCTGATGCGGTGCGTGCGAGACAATGGATCCTAGACCATGGTGGA
GCAGGGGGAATCCCCGGTTGGGGAAAGTTCTGGCTGTCGGTCTTGGGCGT
CTACGATTGGGAGGGCGTGGATCCGTTAACACCAGAGTTCTGGCTGATGC
CATATGCAATTCCAATGCACCCGGCTCGGTTTTGGTGTCATTGTAGAGTG
GTTTACCTTCCTATGAGCTATTTGTATGGTAGGAAAGCTGTCGGTGAGAC
GACAAACCTCATCAAAGATATTCGAGAAGAATTGTACGGAGAGCCGTATA
GCGAGATAAACTGGGCAAGTTTCAGGGGAAAGTGTTGCGAAGAAGATGTC
TACGTGAAGAGGCCGTATCTCCAAAGACTGTTGTGGGGTGCTCTCGTTAT
CTTTGAGAAAACATGGTTTCCGTTCAAGAAAGTATTGAGGCAAAAAGCGC
TGCAGGAAACACTTGAGCTTGTCAAAGGAGAAGATCGATTTTCTAAGCAC
ATCGATATCGGTCCGGTCAATAAGGTTATTAACTTCCTTTGCGTCTGGTT
TGATAACCCCAATAGTGAAGAGGTGTCAAAACACCGTGACAGACTGAAGG
ATTATCTGTGGCTTGCTGAAGATGGGATGAAAATGCAGGGATATAATGGT
TCTCAACTTTGGGACACCGCGTTCACCAGTCAAGCTTTCATGACGGCCGG
GGAAGAAATCCTACGTCCTTTTGTCAGAACATTGTCGCTAGCTCATGATT
ATATCAGAATCACGCAAGTCAGAGAGGATGTTCCCAATCGCGAAAGATAT
TACCGACATCCAAGCAAAGGGGCATGGCCTTTCAGCACAAGAGATCATGG
TTGGCCAATTGCAGATTGCACTGGAGAAGGGCTAGCAGCGTCGTTACTCT
TGCAAGGTGAGGAAGGGTCGTGGATTCCAAAAACTCAGTGCATATCGTTA
GAACGACTTGCAGACGCTGCCGAAATGATTCTCAGTTACCAAAATGAAGA
TGGTGGTTGGGCTACCTATGAGCTTACTCGTGGTCCCAGATGGCTCGAGT
ATCTAAATCCGTCTGAAGTGTTCGGAGATATCATGATTGATTACTCCTAT
GTTGAATGCTCTGCTTCAGCCATGAAAGGTTTGGGGGAGTTTCGGAAAGC
TTACCCTAACCATCCGTTGAGGCCCAGAATCGACAGATCAGTCGAAAGAG
GAATCAAGTTTATTGAGTCCATTCAAAGGGAAGATGGCTCATGGTATGGA
AGCTGGGGGGTTTGCTTTCTGTATGCGTTCTGGTTTGCAATGGACGCGTA
CTCTTCTGTTGGGCTCACACCTGACTCGAGTAGTTCTATGCGACGGGCAT
GTGAATTTATTTTGAGCAAACAGAAGGAAGACGGTAGCTGGGGAGAGAGC
TATCTCAGTTCTGAACAATTGGTCTATGTGCAGTCAAAACATGGGCTTGT
TGTTAGTACGGGTTGGGCGCTAGTGGCATTAAGCATGGCGAGATGGTTTA
ACAAGGAGCCACTGGAGAAGGCTGCGCAGTTTCTCATTCGCTCGCAAGAA
GAAAATGGAGACTGGCCACAGCAAAACATCTGTGGTGTCTTTAACAAGAA
CTGTATGATATCATATTCCCAATACCGTAACATCTTTCCAATTTGGGCTC
TTTCTGAATATCGAAGGTATTGTACATCATGA
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protein sequence of Ggra2418.t1

>Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=744bp
MGAVEGESDMWMLRFERGRQWWEPNGPQDESHLKDLKEAQTNFASNRQKT
SHSSDRVLRLLGAHGLIEGNPTLGRIEPVPGHIAGDPVSVAIHKGIAYFA
TLQCGDGHWAGDYAGPMFLMPGMIIACYVTKTPLHPSQKREMIRYLRNHQ
NKDGGFGLHIEHKSIMFGTGLNYVALRLLGVGPDDPDAVRARQWILDHGG
AGGIPGWGKFWLSVLGVYDWEGVDPLTPEFWLMPYAIPMHPARFWCHCRV
VYLPMSYLYGRKAVGETTNLIKDIREELYGEPYSEINWASFRGKCCEEDV
YVKRPYLQRLLWGALVIFEKTWFPFKKVLRQKALQETLELVKGEDRFSKH
IDIGPVNKVINFLCVWFDNPNSEEVSKHRDRLKDYLWLAEDGMKMQGYNG
SQLWDTAFTSQAFMTAGEEILRPFVRTLSLAHDYIRITQVREDVPNRERY
YRHPSKGAWPFSTRDHGWPIADCTGEGLAASLLLQGEEGSWIPKTQCISL
ERLADAAEMILSYQNEDGGWATYELTRGPRWLEYLNPSEVFGDIMIDYSY
VECSASAMKGLGEFRKAYPNHPLRPRIDRSVERGIKFIESIQREDGSWYG
SWGVCFLYAFWFAMDAYSSVGLTPDSSSSMRRACEFILSKQKEDGSWGES
YLSSEQLVYVQSKHGLVVSTGWALVALSMARWFNKEPLEKAAQFLIRSQE
ENGDWPQQNICGVFNKNCMISYSQYRNIFPIWALSEYRRYCTS*
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mRNA from alignment at tig00000005_pilon:223546..225777-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2232bp|location=Sequence derived from alignment at tig00000005_pilon:223546..225777- (Gracilaria gracilis GNS1m male)
ATGGGGGCTGTCGAAGGCGAATCGGATATGTGGATGCTCCGCTTCGAAAG AGGGAGGCAGTGGTGGGAACCTAATGGACCCCAAGACGAGAGCCACCTCA AGGACTTGAAAGAAGCGCAAACGAACTTTGCTAGCAATCGTCAGAAAACG AGTCATTCCTCAGATCGCGTTCTTCGTTTGCTCGGTGCTCATGGTTTGAT CGAAGGTAATCCTACCCTTGGAAGAATCGAACCAGTCCCTGGTCATATCG CAGGCGATCCTGTGTCTGTAGCAATTCACAAAGGTATCGCATATTTTGCA ACGCTTCAGTGTGGAGATGGACATTGGGCAGGTGACTATGCTGGACCGAT GTTCCTCATGCCTGGTATGATTATAGCATGTTATGTGACCAAGACACCTT TGCATCCCTCACAAAAGCGTGAAATGATCCGTTATTTACGAAACCATCAG AACAAAGATGGTGGTTTCGGTTTGCATATCGAACATAAGTCAATAATGTT TGGGACGGGACTCAATTATGTTGCCCTGAGGCTGCTAGGAGTAGGCCCTG ATGACCCTGATGCGGTGCGTGCGAGACAATGGATCCTAGACCATGGTGGA GCAGGGGGAATCCCCGGTTGGGGAAAGTTCTGGCTGTCGGTCTTGGGCGT CTACGATTGGGAGGGCGTGGATCCGTTAACACCAGAGTTCTGGCTGATGC CATATGCAATTCCAATGCACCCGGCTCGGTTTTGGTGTCATTGTAGAGTG GTTTACCTTCCTATGAGCTATTTGTATGGTAGGAAAGCTGTCGGTGAGAC GACAAACCTCATCAAAGATATTCGAGAAGAATTGTACGGAGAGCCGTATA GCGAGATAAACTGGGCAAGTTTCAGGGGAAAGTGTTGCGAAGAAGATGTC TACGTGAAGAGGCCGTATCTCCAAAGACTGTTGTGGGGTGCTCTCGTTAT CTTTGAGAAAACATGGTTTCCGTTCAAGAAAGTATTGAGGCAAAAAGCGC TGCAGGAAACACTTGAGCTTGTCAAAGGAGAAGATCGATTTTCTAAGCAC ATCGATATCGGTCCGGTCAATAAGGTTATTAACTTCCTTTGCGTCTGGTT TGATAACCCCAATAGTGAAGAGGTGTCAAAACACCGTGACAGACTGAAGG ATTATCTGTGGCTTGCTGAAGATGGGATGAAAATGCAGGGATATAATGGT TCTCAACTTTGGGACACCGCGTTCACCAGTCAAGCTTTCATGACGGCCGG GGAAGAAATCCTACGTCCTTTTGTCAGAACATTGTCGCTAGCTCATGATT ATATCAGAATCACGCAAGTCAGAGAGGATGTTCCCAATCGCGAAAGATAT TACCGACATCCAAGCAAAGGGGCATGGCCTTTCAGCACAAGAGATCATGG TTGGCCAATTGCAGATTGCACTGGAGAAGGGCTAGCAGCGTCGTTACTCT TGCAAGGTGAGGAAGGGTCGTGGATTCCAAAAACTCAGTGCATATCGTTA GAACGACTTGCAGACGCTGCCGAAATGATTCTCAGTTACCAAAATGAAGA TGGTGGTTGGGCTACCTATGAGCTTACTCGTGGTCCCAGATGGCTCGAGT ATCTAAATCCGTCTGAAGTGTTCGGAGATATCATGATTGATTACTCCTAT GTTGAATGCTCTGCTTCAGCCATGAAAGGTTTGGGGGAGTTTCGGAAAGC TTACCCTAACCATCCGTTGAGGCCCAGAATCGACAGATCAGTCGAAAGAG GAATCAAGTTTATTGAGTCCATTCAAAGGGAAGATGGCTCATGGTATGGA AGCTGGGGGGTTTGCTTTCTGTATGCGTTCTGGTTTGCAATGGACGCGTA CTCTTCTGTTGGGCTCACACCTGACTCGAGTAGTTCTATGCGACGGGCAT GTGAATTTATTTTGAGCAAACAGAAGGAAGACGGTAGCTGGGGAGAGAGC TATCTCAGTTCTGAACAATTGGTCTATGTGCAGTCAAAACATGGGCTTGT TGTTAGTACGGGTTGGGCGCTAGTGGCATTAAGCATGGCGAGATGGTTTA ACAAGGAGCCACTGGAGAAGGCTGCGCAGTTTCTCATTCGCTCGCAAGAA GAAAATGGAGACTGGCCACAGCAAAACATCTGTGGTGTCTTTAACAAGAA CTGTATGATATCATATTCCCAATACCGTAACATCTTTCCAATTTGGGCTC TTTCTGAATATCGAAGGTATTGTACATCATGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:223546..225777-

>Ggra2418.t1 ID=Ggra2418.t1|Name=Ggra2418.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2232bp|location=Sequence derived from alignment at tig00000005_pilon:223546..225777- (Gracilaria gracilis GNS1m male)
ATGGGGGCTGTCGAAGGCGAATCGGATATGTGGATGCTCCGCTTCGAAAG
AGGGAGGCAGTGGTGGGAACCTAATGGACCCCAAGACGAGAGCCACCTCA
AGGACTTGAAAGAAGCGCAAACGAACTTTGCTAGCAATCGTCAGAAAACG
AGTCATTCCTCAGATCGCGTTCTTCGTTTGCTCGGTGCTCATGGTTTGAT
CGAAGGTAATCCTACCCTTGGAAGAATCGAACCAGTCCCTGGTCATATCG
CAGGCGATCCTGTGTCTGTAGCAATTCACAAAGGTATCGCATATTTTGCA
ACGCTTCAGTGTGGAGATGGACATTGGGCAGGTGACTATGCTGGACCGAT
GTTCCTCATGCCTGGTATGATTATAGCATGTTATGTGACCAAGACACCTT
TGCATCCCTCACAAAAGCGTGAAATGATCCGTTATTTACGAAACCATCAG
AACAAAGATGGTGGTTTCGGTTTGCATATCGAACATAAGTCAATAATGTT
TGGGACGGGACTCAATTATGTTGCCCTGAGGCTGCTAGGAGTAGGCCCTG
ATGACCCTGATGCGGTGCGTGCGAGACAATGGATCCTAGACCATGGTGGA
GCAGGGGGAATCCCCGGTTGGGGAAAGTTCTGGCTGTCGGTCTTGGGCGT
CTACGATTGGGAGGGCGTGGATCCGTTAACACCAGAGTTCTGGCTGATGC
CATATGCAATTCCAATGCACCCGGCTCGGTTTTGGTGTCATTGTAGAGTG
GTTTACCTTCCTATGAGCTATTTGTATGGTAGGAAAGCTGTCGGTGAGAC
GACAAACCTCATCAAAGATATTCGAGAAGAATTGTACGGAGAGCCGTATA
GCGAGATAAACTGGGCAAGTTTCAGGGGAAAGTGTTGCGAAGAAGATGTC
TACGTGAAGAGGCCGTATCTCCAAAGACTGTTGTGGGGTGCTCTCGTTAT
CTTTGAGAAAACATGGTTTCCGTTCAAGAAAGTATTGAGGCAAAAAGCGC
TGCAGGAAACACTTGAGCTTGTCAAAGGAGAAGATCGATTTTCTAAGCAC
ATCGATATCGGTCCGGTCAATAAGGTTATTAACTTCCTTTGCGTCTGGTT
TGATAACCCCAATAGTGAAGAGGTGTCAAAACACCGTGACAGACTGAAGG
ATTATCTGTGGCTTGCTGAAGATGGGATGAAAATGCAGGGATATAATGGT
TCTCAACTTTGGGACACCGCGTTCACCAGTCAAGCTTTCATGACGGCCGG
GGAAGAAATCCTACGTCCTTTTGTCAGAACATTGTCGCTAGCTCATGATT
ATATCAGAATCACGCAAGTCAGAGAGGATGTTCCCAATCGCGAAAGATAT
TACCGACATCCAAGCAAAGGGGCATGGCCTTTCAGCACAAGAGATCATGG
TTGGCCAATTGCAGATTGCACTGGAGAAGGGCTAGCAGCGTCGTTACTCT
TGCAAGGTGAGGAAGGGTCGTGGATTCCAAAAACTCAGTGCATATCGTTA
GAACGACTTGCAGACGCTGCCGAAATGATTCTCAGTTACCAAAATGAAGA
TGGTGGTTGGGCTACCTATGAGCTTACTCGTGGTCCCAGATGGCTCGAGT
ATCTAAATCCGTCTGAAGTGTTCGGAGATATCATGATTGATTACTCCTAT
GTTGAATGCTCTGCTTCAGCCATGAAAGGTTTGGGGGAGTTTCGGAAAGC
TTACCCTAACCATCCGTTGAGGCCCAGAATCGACAGATCAGTCGAAAGAG
GAATCAAGTTTATTGAGTCCATTCAAAGGGAAGATGGCTCATGGTATGGA
AGCTGGGGGGTTTGCTTTCTGTATGCGTTCTGGTTTGCAATGGACGCGTA
CTCTTCTGTTGGGCTCACACCTGACTCGAGTAGTTCTATGCGACGGGCAT
GTGAATTTATTTTGAGCAAACAGAAGGAAGACGGTAGCTGGGGAGAGAGC
TATCTCAGTTCTGAACAATTGGTCTATGTGCAGTCAAAACATGGGCTTGT
TGTTAGTACGGGTTGGGCGCTAGTGGCATTAAGCATGGCGAGATGGTTTA
ACAAGGAGCCACTGGAGAAGGCTGCGCAGTTTCTCATTCGCTCGCAAGAA
GAAAATGGAGACTGGCCACAGCAAAACATCTGTGGTGTCTTTAACAAGAA
CTGTATGATATCATATTCCCAATACCGTAACATCTTTCCAATTTGGGCTC
TTTCTGAATATCGAAGGTATTGTACATCATGA
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