Ggra2412.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2412.t1
Unique Name	Ggra2412.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:199459..200802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	66875.JODY01000018_gene421
PFAMs	Aminotran_5
Max annot lvl	201174\|Actinobacteria
Evalue	2.08e-105
EggNOG OGs	COG0520@1\|root,COG0520@2\|Bacteria,2IAKT@201174\|Actinobacteria
Description	Aminotransferase class-V
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2412	Ggra2412	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 199459..200802 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2412.t1.start1	Ggra2412.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 199459..199461 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2412.t1.CDS1	Ggra2412.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 199459..200802 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2412.t1.exon1	Ggra2412.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 199459..200802 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2412.t1.stop1	Ggra2412.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 200800..200802 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2412.t1	Ggra2412.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 199459..200802 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:199459..200802+
coding sequence from alignment at tig00000005_pilon:199459..200802+

mRNA sequence

>Ggra2412.t1 ID=Ggra2412.t1|Name=Ggra2412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=448bp
MSSPPMNQSFSRIRRKHFAQLDRSNVVYLDHTGACPVPRDLPLKHAELLS
THVYANPHSASAPSEHATAAMERARNAVLHFFHAREHEVIFTANASAAIH
LVAQTFPFSSRSTLYMSADNHNSVLALRESVRHVGGKTVVLPLDTRLNLA
QPHSYIRQSDDDGASLLAYPAQSNFSGVRHDLSLVPFAKGRNVRVLLDVA
AYVPTSALDLSVVDADFVPLSFYKMFGYPTGIGALIVRKDAMQVLRKQWF
AGGTVKFVSVSSDLHVLHDGADAFQDGTVDFLSFPAIVNGLRFLSKIGMS
NITKNVASLTHQLLHHLHNMRYGNGRRMTVIYGPDMHDHVNRGGTVAMDI
LDNCGKRIDCHFVEKEAGRRGLAIRAGCFCNPGCAERVFDIDALSVVECV
RKGRSAYDCTDGIGCLRVSVGVASVRKDVKAFLSFVSYFCGTFGVKC*

spliced messenger RNA

>Ggra2412.t1 ID=Ggra2412.t1|Name=Ggra2412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000005_pilon:199459..200802+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTCCTCCCATGAATCAGTCTTTCTCGCGCATTAGGCGCAAGCA
CTTTGCGCAGCTTGACCGCTCCAACGTCGTCTACCTGGATCATACCGGCG
CTTGCCCGGTCCCGCGCGACCTCCCGCTCAAGCATGCCGAGCTGCTTTCC
ACCCATGTCTATGCTAACCCGCACTCGGCCTCCGCGCCGTCTGAGCACGC
CACTGCCGCTATGGAACGAGCGCGCAACGCCGTGCTGCACTTCTTCCATG
CCCGCGAACATGAAGTCATTTTTACCGCCAACGCATCCGCCGCTATCCAC
CTGGTGGCACAGACCTTCCCGTTTTCTTCGCGATCGACCTTGTACATGTC
TGCCGACAATCACAACTCCGTGTTGGCTCTGCGCGAATCGGTGCGCCACG
TGGGCGGAAAGACAGTGGTGCTGCCGCTTGATACGCGTCTGAACCTTGCA
CAACCACACTCGTATATTCGACAGAGCGACGACGATGGCGCTAGTTTGCT
TGCATATCCCGCGCAATCCAACTTTTCGGGCGTTCGACATGACCTCAGTT
TGGTGCCGTTTGCCAAAGGGCGAAACGTGCGCGTATTGTTGGACGTTGCG
GCGTATGTTCCCACCTCTGCACTGGATCTGTCCGTGGTGGATGCTGACTT
TGTTCCGCTGTCGTTTTACAAGATGTTTGGATATCCTACTGGCATTGGAG
CGTTGATTGTTCGCAAGGATGCAATGCAAGTGCTACGCAAGCAATGGTTT
GCTGGCGGCACAGTCAAGTTTGTGTCCGTGTCTTCTGATTTGCATGTTTT
GCACGATGGCGCTGACGCTTTTCAGGATGGCACGGTGGACTTTCTTTCGT
TCCCCGCTATTGTGAATGGGTTGCGGTTCCTGTCTAAGATTGGAATGAGT
AATATCACCAAGAACGTGGCGTCACTAACACACCAGCTGCTGCACCATTT
GCACAACATGCGATATGGTAACGGACGTAGAATGACGGTGATATACGGCC
CCGATATGCACGATCATGTGAATCGTGGAGGAACGGTTGCGATGGATATA
TTGGACAACTGTGGCAAACGTATTGATTGTCATTTTGTTGAAAAGGAGGC
CGGACGTCGGGGACTTGCCATCCGCGCCGGATGCTTCTGCAATCCGGGAT
GCGCGGAGCGCGTGTTCGACATTGATGCGCTCTCTGTGGTGGAATGCGTC
CGGAAAGGACGAAGCGCATACGACTGCACGGATGGCATCGGCTGCCTGCG
CGTGTCGGTGGGAGTTGCCAGCGTGAGGAAGGACGTGAAGGCGTTCCTGT
CGTTTGTCAGTTATTTTTGTGGCACGTTTGGAGTCAAGTGCTGA

protein sequence of Ggra2412.t1

>Ggra2412.t1 ID=Ggra2412.t1|Name=Ggra2412.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=448bp
MSSPPMNQSFSRIRRKHFAQLDRSNVVYLDHTGACPVPRDLPLKHAELLS
THVYANPHSASAPSEHATAAMERARNAVLHFFHAREHEVIFTANASAAIH
LVAQTFPFSSRSTLYMSADNHNSVLALRESVRHVGGKTVVLPLDTRLNLA
QPHSYIRQSDDDGASLLAYPAQSNFSGVRHDLSLVPFAKGRNVRVLLDVA
AYVPTSALDLSVVDADFVPLSFYKMFGYPTGIGALIVRKDAMQVLRKQWF
AGGTVKFVSVSSDLHVLHDGADAFQDGTVDFLSFPAIVNGLRFLSKIGMS
NITKNVASLTHQLLHHLHNMRYGNGRRMTVIYGPDMHDHVNRGGTVAMDI
LDNCGKRIDCHFVEKEAGRRGLAIRAGCFCNPGCAERVFDIDALSVVECV
RKGRSAYDCTDGIGCLRVSVGVASVRKDVKAFLSFVSYFCGTFGVKC*

mRNA from alignment at tig00000005_pilon:199459..200802+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2412.t1 ID=Ggra2412.t1|Name=Ggra2412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000005_pilon:199459..200802+ (Gracilaria gracilis GNS1m male)
ATGTCGTCTCCTCCCATGAATCAGTCTTTCTCGCGCATTAGGCGCAAGCA
CTTTGCGCAGCTTGACCGCTCCAACGTCGTCTACCTGGATCATACCGGCG
CTTGCCCGGTCCCGCGCGACCTCCCGCTCAAGCATGCCGAGCTGCTTTCC
ACCCATGTCTATGCTAACCCGCACTCGGCCTCCGCGCCGTCTGAGCACGC
CACTGCCGCTATGGAACGAGCGCGCAACGCCGTGCTGCACTTCTTCCATG
CCCGCGAACATGAAGTCATTTTTACCGCCAACGCATCCGCCGCTATCCAC
CTGGTGGCACAGACCTTCCCGTTTTCTTCGCGATCGACCTTGTACATGTC
TGCCGACAATCACAACTCCGTGTTGGCTCTGCGCGAATCGGTGCGCCACG
TGGGCGGAAAGACAGTGGTGCTGCCGCTTGATACGCGTCTGAACCTTGCA
CAACCACACTCGTATATTCGACAGAGCGACGACGATGGCGCTAGTTTGCT
TGCATATCCCGCGCAATCCAACTTTTCGGGCGTTCGACATGACCTCAGTT
TGGTGCCGTTTGCCAAAGGGCGAAACGTGCGCGTATTGTTGGACGTTGCG
GCGTATGTTCCCACCTCTGCACTGGATCTGTCCGTGGTGGATGCTGACTT
TGTTCCGCTGTCGTTTTACAAGATGTTTGGATATCCTACTGGCATTGGAG
CGTTGATTGTTCGCAAGGATGCAATGCAAGTGCTACGCAAGCAATGGTTT
GCTGGCGGCACAGTCAAGTTTGTGTCCGTGTCTTCTGATTTGCATGTTTT
GCACGATGGCGCTGACGCTTTTCAGGATGGCACGGTGGACTTTCTTTCGT
TCCCCGCTATTGTGAATGGGTTGCGGTTCCTGTCTAAGATTGGAATGAGT
AATATCACCAAGAACGTGGCGTCACTAACACACCAGCTGCTGCACCATTT
GCACAACATGCGATATGGTAACGGACGTAGAATGACGGTGATATACGGCC
CCGATATGCACGATCATGTGAATCGTGGAGGAACGGTTGCGATGGATATA
TTGGACAACTGTGGCAAACGTATTGATTGTCATTTTGTTGAAAAGGAGGC
CGGACGTCGGGGACTTGCCATCCGCGCCGGATGCTTCTGCAATCCGGGAT
GCGCGGAGCGCGTGTTCGACATTGATGCGCTCTCTGTGGTGGAATGCGTC
CGGAAAGGACGAAGCGCATACGACTGCACGGATGGCATCGGCTGCCTGCG
CGTGTCGGTGGGAGTTGCCAGCGTGAGGAAGGACGTGAAGGCGTTCCTGT
CGTTTGTCAGTTATTTTTGTGGCACGTTTGGAGTCAAGTGCTGA

Coding sequence (CDS) from alignment at tig00000005_pilon:199459..200802+

>Ggra2412.t1 ID=Ggra2412.t1|Name=Ggra2412.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000005_pilon:199459..200802+ (Gracilaria gracilis GNS1m male)
ATGTCGTCTCCTCCCATGAATCAGTCTTTCTCGCGCATTAGGCGCAAGCA
CTTTGCGCAGCTTGACCGCTCCAACGTCGTCTACCTGGATCATACCGGCG
CTTGCCCGGTCCCGCGCGACCTCCCGCTCAAGCATGCCGAGCTGCTTTCC
ACCCATGTCTATGCTAACCCGCACTCGGCCTCCGCGCCGTCTGAGCACGC
CACTGCCGCTATGGAACGAGCGCGCAACGCCGTGCTGCACTTCTTCCATG
CCCGCGAACATGAAGTCATTTTTACCGCCAACGCATCCGCCGCTATCCAC
CTGGTGGCACAGACCTTCCCGTTTTCTTCGCGATCGACCTTGTACATGTC
TGCCGACAATCACAACTCCGTGTTGGCTCTGCGCGAATCGGTGCGCCACG
TGGGCGGAAAGACAGTGGTGCTGCCGCTTGATACGCGTCTGAACCTTGCA
CAACCACACTCGTATATTCGACAGAGCGACGACGATGGCGCTAGTTTGCT
TGCATATCCCGCGCAATCCAACTTTTCGGGCGTTCGACATGACCTCAGTT
TGGTGCCGTTTGCCAAAGGGCGAAACGTGCGCGTATTGTTGGACGTTGCG
GCGTATGTTCCCACCTCTGCACTGGATCTGTCCGTGGTGGATGCTGACTT
TGTTCCGCTGTCGTTTTACAAGATGTTTGGATATCCTACTGGCATTGGAG
CGTTGATTGTTCGCAAGGATGCAATGCAAGTGCTACGCAAGCAATGGTTT
GCTGGCGGCACAGTCAAGTTTGTGTCCGTGTCTTCTGATTTGCATGTTTT
GCACGATGGCGCTGACGCTTTTCAGGATGGCACGGTGGACTTTCTTTCGT
TCCCCGCTATTGTGAATGGGTTGCGGTTCCTGTCTAAGATTGGAATGAGT
AATATCACCAAGAACGTGGCGTCACTAACACACCAGCTGCTGCACCATTT
GCACAACATGCGATATGGTAACGGACGTAGAATGACGGTGATATACGGCC
CCGATATGCACGATCATGTGAATCGTGGAGGAACGGTTGCGATGGATATA
TTGGACAACTGTGGCAAACGTATTGATTGTCATTTTGTTGAAAAGGAGGC
CGGACGTCGGGGACTTGCCATCCGCGCCGGATGCTTCTGCAATCCGGGAT
GCGCGGAGCGCGTGTTCGACATTGATGCGCTCTCTGTGGTGGAATGCGTC
CGGAAAGGACGAAGCGCATACGACTGCACGGATGGCATCGGCTGCCTGCG
CGTGTCGGTGGGAGTTGCCAGCGTGAGGAAGGACGTGAAGGCGTTCCTGT
CGTTTGTCAGTTATTTTTGTGGCACGTTTGGAGTCAAGTGCTGA