Ggra2400.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2400.t1
Unique NameGgra2400.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:136259..137382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2400Ggra2400Gracilaria gracilis GNS1m malegenetig00000005_pilon 136259..137382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2400.t1Ggra2400.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 136259..137382 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2400.t1.start1Ggra2400.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 136259..136261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2400.t1.CDS1Ggra2400.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 136259..136819 +
Ggra2400.t1.CDS2Ggra2400.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 136930..137382 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2400.t1.exon1Ggra2400.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 136259..136819 +
Ggra2400.t1.exon2Ggra2400.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 136930..137382 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2400.t1.intron1Ggra2400.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 136820..136929 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2400.t1.stop1Ggra2400.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 137380..137382 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2400.t1 ID=Ggra2400.t1|Name=Ggra2400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=338bp
MKHQGAESRPAAKVDIDARHAEPHIASKQAQLQRAAAEQRPTATAVTRFP
WHSAVFLLAGILLGKLHTDIAHQINGLVHGFRPQCKLGDICAWYEKRPYL
EDGRLSSAVWDVARKHLTCNYSALHHFRTGATVKMQSQYPRIVWMSAVLD
ESEVALLAEAAALSFSQTQFAVDDIEEAVLHMSQMDKSVGGLVNKVVRLI
GLPSNRYVEQLVFRRYHQHSRTEEATAWCHNGQTAPTLGCFEGCGCAAVA
QLSLQSAADGGTDVVSGDDGKQQRSDEMRVTAQAGDMLTWFVIHPMTEHV
QSIWQRAEAVTHGTKLLAELRIRNCSCSTNRARKVRG*
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spliced messenger RNA

>Ggra2400.t1 ID=Ggra2400.t1|Name=Ggra2400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000005_pilon:136259..137382+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCATCAGGGCGCGGAAAGTAGGCCAGCAGCCAAAGTTGACATTGA
TGCGCGCCATGCAGAGCCTCACATCGCGTCCAAACAGGCGCAGCTTCAGC
GCGCCGCCGCCGAGCAGCGCCCGACCGCAACGGCCGTCACACGGTTCCCA
TGGCACAGCGCCGTGTTTCTGCTTGCAGGCATTCTGCTGGGAAAGTTGCA
CACCGATATCGCGCATCAGATCAACGGCTTGGTGCATGGGTTTCGTCCGC
AGTGCAAGCTGGGCGACATTTGCGCGTGGTATGAAAAGCGCCCGTATCTT
GAGGATGGGCGCTTGTCTTCTGCTGTTTGGGACGTTGCTCGCAAGCATCT
TACGTGCAACTACAGCGCCTTGCATCACTTCAGAACGGGGGCCACCGTGA
AGATGCAATCGCAATATCCAAGAATTGTGTGGATGTCGGCCGTTCTTGAC
GAAAGCGAAGTGGCGCTGTTGGCGGAAGCGGCCGCGCTTTCGTTTTCTCA
AACGCAGTTTGCTGTGGATGACATAGAGGAAGCAGTGCTTCACATGTCGC
AAATGGACAAGTCCGTGGGTGGGCTGGTGAACAAAGTGGTCAGGCTGATT
GGGTTGCCATCCAATCGCTATGTGGAGCAGCTGGTGTTTCGTCGGTACCA
CCAGCATTCTCGCACGGAAGAGGCGACAGCTTGGTGCCACAACGGACAAA
CGGCACCGACTTTGGGATGTTTTGAAGGGTGTGGATGCGCCGCGGTGGCG
CAGCTTAGCTTGCAGAGCGCGGCAGATGGCGGCACCGACGTGGTATCAGG
TGATGACGGCAAGCAGCAACGTTCAGACGAAATGCGCGTGACAGCGCAAG
CGGGTGACATGCTAACGTGGTTTGTCATACACCCCATGACGGAACACGTT
CAATCGATATGGCAGCGTGCAGAGGCGGTGACGCACGGCACCAAGCTGCT
GGCTGAGCTGCGCATTCGCAACTGCTCGTGCTCAACGAACAGGGCGCGCA
AAGTGAGGGGCTGA
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protein sequence of Ggra2400.t1

>Ggra2400.t1 ID=Ggra2400.t1|Name=Ggra2400.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=338bp
MKHQGAESRPAAKVDIDARHAEPHIASKQAQLQRAAAEQRPTATAVTRFP
WHSAVFLLAGILLGKLHTDIAHQINGLVHGFRPQCKLGDICAWYEKRPYL
EDGRLSSAVWDVARKHLTCNYSALHHFRTGATVKMQSQYPRIVWMSAVLD
ESEVALLAEAAALSFSQTQFAVDDIEEAVLHMSQMDKSVGGLVNKVVRLI
GLPSNRYVEQLVFRRYHQHSRTEEATAWCHNGQTAPTLGCFEGCGCAAVA
QLSLQSAADGGTDVVSGDDGKQQRSDEMRVTAQAGDMLTWFVIHPMTEHV
QSIWQRAEAVTHGTKLLAELRIRNCSCSTNRARKVRG*
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mRNA from alignment at tig00000005_pilon:136259..137382+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2400.t1 ID=Ggra2400.t1|Name=Ggra2400.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1124bp|location=Sequence derived from alignment at tig00000005_pilon:136259..137382+ (Gracilaria gracilis GNS1m male)
ATGAAGCATCAGGGCGCGGAAAGTAGGCCAGCAGCCAAAGTTGACATTGA
TGCGCGCCATGCAGAGCCTCACATCGCGTCCAAACAGGCGCAGCTTCAGC
GCGCCGCCGCCGAGCAGCGCCCGACCGCAACGGCCGTCACACGGTTCCCA
TGGCACAGCGCCGTGTTTCTGCTTGCAGGCATTCTGCTGGGAAAGTTGCA
CACCGATATCGCGCATCAGATCAACGGCTTGGTGCATGGGTTTCGTCCGC
AGTGCAAGCTGGGCGACATTTGCGCGTGGTATGAAAAGCGCCCGTATCTT
GAGGATGGGCGCTTGTCTTCTGCTGTTTGGGACGTTGCTCGCAAGCATCT
TACGTGCAACTACAGCGCCTTGCATCACTTCAGAACGGGGGCCACCGTGA
AGATGCAATCGCAATATCCAAGAATTGTGTGGATGTCGGCCGTTCTTGAC
GAAAGCGAAGTGGCGCTGTTGGCGGAAGCGGCCGCGCTTTCGTTTTCTCA
AACGCAGTTTGCTGTGGATGACATAGAGGAAGCAGTGCTTCACATGTCGC
AAATGGACAAGGTACGCATTTTTCGCTCCACATGTTTGCTGTCGTTGGAG
GCAGTGTTGTTGTTGTTCGTCTACAGCGCGCTGACGACTGTTTGTTGTTC
TCTCCGCTGCGATGGGAGCAGTCCGTGGGTGGGCTGGTGAACAAAGTGGT
CAGGCTGATTGGGTTGCCATCCAATCGCTATGTGGAGCAGCTGGTGTTTC
GTCGGTACCACCAGCATTCTCGCACGGAAGAGGCGACAGCTTGGTGCCAC
AACGGACAAACGGCACCGACTTTGGGATGTTTTGAAGGGTGTGGATGCGC
CGCGGTGGCGCAGCTTAGCTTGCAGAGCGCGGCAGATGGCGGCACCGACG
TGGTATCAGGTGATGACGGCAAGCAGCAACGTTCAGACGAAATGCGCGTG
ACAGCGCAAGCGGGTGACATGCTAACGTGGTTTGTCATACACCCCATGAC
GGAACACGTTCAATCGATATGGCAGCGTGCAGAGGCGGTGACGCACGGCA
CCAAGCTGCTGGCTGAGCTGCGCATTCGCAACTGCTCGTGCTCAACGAAC
AGGGCGCGCAAAGTGAGGGGCTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:136259..137382+

>Ggra2400.t1 ID=Ggra2400.t1|Name=Ggra2400.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00000005_pilon:136259..137382+ (Gracilaria gracilis GNS1m male)
ATGAAGCATCAGGGCGCGGAAAGTAGGCCAGCAGCCAAAGTTGACATTGA
TGCGCGCCATGCAGAGCCTCACATCGCGTCCAAACAGGCGCAGCTTCAGC
GCGCCGCCGCCGAGCAGCGCCCGACCGCAACGGCCGTCACACGGTTCCCA
TGGCACAGCGCCGTGTTTCTGCTTGCAGGCATTCTGCTGGGAAAGTTGCA
CACCGATATCGCGCATCAGATCAACGGCTTGGTGCATGGGTTTCGTCCGC
AGTGCAAGCTGGGCGACATTTGCGCGTGGTATGAAAAGCGCCCGTATCTT
GAGGATGGGCGCTTGTCTTCTGCTGTTTGGGACGTTGCTCGCAAGCATCT
TACGTGCAACTACAGCGCCTTGCATCACTTCAGAACGGGGGCCACCGTGA
AGATGCAATCGCAATATCCAAGAATTGTGTGGATGTCGGCCGTTCTTGAC
GAAAGCGAAGTGGCGCTGTTGGCGGAAGCGGCCGCGCTTTCGTTTTCTCA
AACGCAGTTTGCTGTGGATGACATAGAGGAAGCAGTGCTTCACATGTCGC
AAATGGACAAGTCCGTGGGTGGGCTGGTGAACAAAGTGGTCAGGCTGATT
GGGTTGCCATCCAATCGCTATGTGGAGCAGCTGGTGTTTCGTCGGTACCA
CCAGCATTCTCGCACGGAAGAGGCGACAGCTTGGTGCCACAACGGACAAA
CGGCACCGACTTTGGGATGTTTTGAAGGGTGTGGATGCGCCGCGGTGGCG
CAGCTTAGCTTGCAGAGCGCGGCAGATGGCGGCACCGACGTGGTATCAGG
TGATGACGGCAAGCAGCAACGTTCAGACGAAATGCGCGTGACAGCGCAAG
CGGGTGACATGCTAACGTGGTTTGTCATACACCCCATGACGGAACACGTT
CAATCGATATGGCAGCGTGCAGAGGCGGTGACGCACGGCACCAAGCTGCT
GGCTGAGCTGCGCATTCGCAACTGCTCGTGCTCAACGAACAGGGCGCGCA
AAGTGAGGGGCTGA
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