Ggra2392.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2392.t1
Unique NameGgra2392.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length147
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:114842..115282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2392Ggra2392Gracilaria gracilis GNS1m malegenetig00000005_pilon 114842..115282 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2392.t1.start1Ggra2392.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 114842..114844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2392.t1.CDS1Ggra2392.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 114842..115282 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2392.t1.exon1Ggra2392.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 114842..115282 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2392.t1.stop1Ggra2392.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 115280..115282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2392.t1Ggra2392.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 114842..115282 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2392.t1 ID=Ggra2392.t1|Name=Ggra2392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=147bp
MPPAALLRADADLHCEKIARQYEQLSALQRRNLLAATIARAAKNVERLEV
VPAAAAPVRTEVALRATEGERGKRSAVVGGKEFWKGLEAVNGRAASLGFL
LCLMREVLEPGHPSLFEQVVDVVVPIAQKTPPFVVAVVDRLADLLT*
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spliced messenger RNA

>Ggra2392.t1 ID=Ggra2392.t1|Name=Ggra2392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000005_pilon:114842..115282+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCCGCCGCTTTGCTCAGAGCGGATGCGGACCTGCACTGTGAGAA
GATTGCGCGCCAGTACGAGCAGCTTAGCGCGCTGCAGCGACGCAATTTAC
TCGCGGCTACTATTGCACGCGCCGCCAAGAATGTGGAGCGCTTGGAGGTG
GTGCCCGCAGCTGCGGCGCCTGTTCGCACTGAGGTTGCTTTGCGTGCCAC
GGAGGGGGAACGGGGTAAGCGCAGTGCGGTGGTTGGGGGCAAGGAGTTTT
GGAAGGGTTTGGAAGCGGTCAACGGACGTGCTGCTTCGCTGGGCTTCTTG
CTGTGCCTCATGAGAGAGGTTCTGGAGCCGGGGCATCCCTCGTTGTTTGA
ACAGGTGGTGGACGTGGTTGTGCCCATCGCACAGAAGACGCCGCCTTTCG
TCGTGGCGGTGGTGGACCGTCTAGCAGACCTTCTTACTTAG
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protein sequence of Ggra2392.t1

>Ggra2392.t1 ID=Ggra2392.t1|Name=Ggra2392.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=147bp
MPPAALLRADADLHCEKIARQYEQLSALQRRNLLAATIARAAKNVERLEV
VPAAAAPVRTEVALRATEGERGKRSAVVGGKEFWKGLEAVNGRAASLGFL
LCLMREVLEPGHPSLFEQVVDVVVPIAQKTPPFVVAVVDRLADLLT*
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mRNA from alignment at tig00000005_pilon:114842..115282+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2392.t1 ID=Ggra2392.t1|Name=Ggra2392.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp|location=Sequence derived from alignment at tig00000005_pilon:114842..115282+ (Gracilaria gracilis GNS1m male)
ATGCCTCCCGCCGCTTTGCTCAGAGCGGATGCGGACCTGCACTGTGAGAA
GATTGCGCGCCAGTACGAGCAGCTTAGCGCGCTGCAGCGACGCAATTTAC
TCGCGGCTACTATTGCACGCGCCGCCAAGAATGTGGAGCGCTTGGAGGTG
GTGCCCGCAGCTGCGGCGCCTGTTCGCACTGAGGTTGCTTTGCGTGCCAC
GGAGGGGGAACGGGGTAAGCGCAGTGCGGTGGTTGGGGGCAAGGAGTTTT
GGAAGGGTTTGGAAGCGGTCAACGGACGTGCTGCTTCGCTGGGCTTCTTG
CTGTGCCTCATGAGAGAGGTTCTGGAGCCGGGGCATCCCTCGTTGTTTGA
ACAGGTGGTGGACGTGGTTGTGCCCATCGCACAGAAGACGCCGCCTTTCG
TCGTGGCGGTGGTGGACCGTCTAGCAGACCTTCTTACTTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:114842..115282+

>Ggra2392.t1 ID=Ggra2392.t1|Name=Ggra2392.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=441bp|location=Sequence derived from alignment at tig00000005_pilon:114842..115282+ (Gracilaria gracilis GNS1m male)
ATGCCTCCCGCCGCTTTGCTCAGAGCGGATGCGGACCTGCACTGTGAGAA
GATTGCGCGCCAGTACGAGCAGCTTAGCGCGCTGCAGCGACGCAATTTAC
TCGCGGCTACTATTGCACGCGCCGCCAAGAATGTGGAGCGCTTGGAGGTG
GTGCCCGCAGCTGCGGCGCCTGTTCGCACTGAGGTTGCTTTGCGTGCCAC
GGAGGGGGAACGGGGTAAGCGCAGTGCGGTGGTTGGGGGCAAGGAGTTTT
GGAAGGGTTTGGAAGCGGTCAACGGACGTGCTGCTTCGCTGGGCTTCTTG
CTGTGCCTCATGAGAGAGGTTCTGGAGCCGGGGCATCCCTCGTTGTTTGA
ACAGGTGGTGGACGTGGTTGTGCCCATCGCACAGAAGACGCCGCCTTTCG
TCGTGGCGGTGGTGGACCGTCTAGCAGACCTTCTTACTTAG
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