Ggra2388.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2388.t1
Unique NameGgra2388.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length606
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:107311..109216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41851
PFAMsBT1
Max annot lvl2759|Eukaryota
Evalue9.46e-144
EggNOG OGs2CMRG@1|root,2QRK9@2759|Eukaryota
Descriptiontransporter
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2388Ggra2388Gracilaria gracilis GNS1m malegenetig00000005_pilon 107311..109216 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2388.t1Ggra2388.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 107311..109216 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2388.t1.start1Ggra2388.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 107311..107313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2388.t1.CDS1Ggra2388.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 107311..107417 +
Ggra2388.t1.CDS2Ggra2388.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 107506..109216 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2388.t1.exon1Ggra2388.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 107311..107417 +
Ggra2388.t1.exon2Ggra2388.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 107506..109216 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2388.t1.intron1Ggra2388.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 107418..107505 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2388.t1.stop1Ggra2388.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 109214..109216 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2388.t1 ID=Ggra2388.t1|Name=Ggra2388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp
MFTSTRQFARSIVHNFGWHFALLLVSVYIGLKGFIYQLAVNAELPFYKSL
GVTGDKYQSFGTVAKTPWALKAAIGLISDTLPLFGYHKRSYIVLVSIAGT
IAFSVLGAVQLTHVLAPIAAFLLLLGNLQLAAVDLLCEGKYAEMMVAKPE
SGSSLVSYVWGLYMIGSFFGSLIAGPMADHFNPRFIWLICVPLAVQVIFP
VLAGWLPEERLPPEQRHLRIDKIRQHPDLFKLSVAMTLGALAVGVSALLS
SGYVQSVVSTTTATMLCVLGLMWLPRMLGRANLYMFLSSLLYVSLPGALD
YWFTGSEECVPGGPHFSFTYYVTYASLVGSIAGAVGVAAFQRFLSKGSFR
TAFWTTCLVKLAASAFDIAIVKRYNISAGIPDKMAFLLGDAIIFQVASTL
DFMPAVVLTSKVCPKGMEASVYALLASYQNLGSNVSRTLGVALIDRLNIK
TTSPCDFTNLPLAIVIAHVLLPLLVFPLVFVLIPNAKMTDDLIENGDEEG
GTLFVRVPSEDDMEEFEPEDKASAKTTSIPTQQSAPRASTISVETNPTRN
HKDESLAFSTGDDSLASITPGTYQQSGMPSSSQGLGFPSSHVDERGDEII
SERKQ*
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spliced messenger RNA

>Ggra2388.t1 ID=Ggra2388.t1|Name=Ggra2388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1818bp|location=Sequence derived from alignment at tig00000005_pilon:107311..109216+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACCTCCACGCGCCAATTTGCCAGATCCATCGTGCACAACTTCGG
CTGGCACTTTGCGTTATTACTCGTATCCGTGTATATCGGCTTGAAGGGGT
TTATATACCAGCTTGCGGTTAATGCCGAGCTTCCGTTCTACAAATCGCTT
GGAGTTACAGGTGATAAGTATCAGTCATTCGGCACCGTCGCCAAGACACC
ATGGGCGCTCAAGGCCGCCATCGGACTTATATCTGACACGCTTCCTCTTT
TTGGTTATCATAAGCGTTCATACATTGTGCTCGTTTCAATTGCTGGTACC
ATAGCCTTTTCTGTTTTGGGTGCCGTCCAGCTCACTCATGTTCTTGCGCC
CATTGCCGCCTTTCTTCTTCTTCTGGGAAATCTACAGCTAGCTGCTGTAG
ATTTGCTCTGTGAAGGAAAATATGCAGAGATGATGGTTGCCAAGCCGGAG
AGCGGCAGTAGCCTTGTATCATATGTCTGGGGTTTGTATATGATAGGGTC
TTTCTTCGGATCTCTCATTGCTGGGCCGATGGCCGATCATTTCAACCCGC
GCTTCATTTGGCTCATATGCGTACCGCTCGCAGTTCAAGTTATATTCCCT
GTATTAGCCGGGTGGCTCCCAGAAGAGCGATTACCCCCCGAACAACGCCA
CCTCAGAATAGACAAGATTCGCCAGCATCCTGACCTATTTAAGTTATCTG
TTGCAATGACTCTAGGTGCACTGGCGGTCGGGGTATCCGCTCTTCTTAGC
AGTGGATATGTTCAATCTGTTGTGTCCACTACAACTGCGACAATGCTTTG
CGTTCTGGGGTTAATGTGGCTACCTCGTATGCTTGGTCGAGCCAATTTGT
ATATGTTTCTCAGTAGCTTGTTGTACGTGTCCTTGCCCGGTGCACTTGAT
TATTGGTTCACAGGCTCAGAAGAGTGTGTACCCGGTGGACCCCACTTCTC
CTTCACTTACTACGTGACTTACGCTTCGTTAGTTGGAAGCATCGCCGGTG
CAGTTGGAGTCGCTGCGTTTCAACGTTTCCTCAGCAAAGGTAGTTTTCGC
ACGGCCTTCTGGACTACATGTCTTGTGAAGCTAGCTGCTTCCGCTTTTGA
CATTGCAATCGTCAAACGATATAATATTTCAGCGGGAATCCCAGACAAGA
TGGCTTTTCTTCTGGGCGACGCAATCATTTTTCAAGTCGCGTCAACATTG
GATTTTATGCCCGCAGTGGTACTAACTTCAAAGGTTTGTCCCAAGGGTAT
GGAAGCTAGTGTCTATGCATTGCTTGCCTCGTATCAGAACTTAGGAAGCA
ATGTCTCCCGAACGCTTGGAGTCGCGCTTATCGACAGACTCAATATCAAG
ACTACTTCGCCATGTGATTTTACAAATCTGCCTTTGGCCATAGTTATTGC
TCATGTTCTGCTTCCACTTCTAGTATTTCCACTCGTATTCGTTTTGATCC
CGAACGCCAAAATGACAGATGACTTAATCGAGAACGGGGACGAAGAGGGT
GGCACGCTATTTGTTCGGGTGCCATCTGAAGACGACATGGAAGAATTTGA
ACCAGAAGACAAAGCATCAGCAAAAACAACATCGATTCCAACTCAGCAGA
GCGCACCTCGAGCTTCAACGATCTCAGTTGAAACTAATCCTACACGAAAT
CATAAGGATGAGTCTCTTGCTTTCAGCACGGGTGACGATTCATTGGCGTC
AATCACTCCAGGAACATATCAACAATCAGGAATGCCATCGTCATCGCAGG
GGCTGGGCTTTCCGTCCAGTCATGTTGACGAAAGAGGAGACGAGATCATA
TCCGAAAGAAAACAATAG
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protein sequence of Ggra2388.t1

>Ggra2388.t1 ID=Ggra2388.t1|Name=Ggra2388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=606bp
MFTSTRQFARSIVHNFGWHFALLLVSVYIGLKGFIYQLAVNAELPFYKSL
GVTGDKYQSFGTVAKTPWALKAAIGLISDTLPLFGYHKRSYIVLVSIAGT
IAFSVLGAVQLTHVLAPIAAFLLLLGNLQLAAVDLLCEGKYAEMMVAKPE
SGSSLVSYVWGLYMIGSFFGSLIAGPMADHFNPRFIWLICVPLAVQVIFP
VLAGWLPEERLPPEQRHLRIDKIRQHPDLFKLSVAMTLGALAVGVSALLS
SGYVQSVVSTTTATMLCVLGLMWLPRMLGRANLYMFLSSLLYVSLPGALD
YWFTGSEECVPGGPHFSFTYYVTYASLVGSIAGAVGVAAFQRFLSKGSFR
TAFWTTCLVKLAASAFDIAIVKRYNISAGIPDKMAFLLGDAIIFQVASTL
DFMPAVVLTSKVCPKGMEASVYALLASYQNLGSNVSRTLGVALIDRLNIK
TTSPCDFTNLPLAIVIAHVLLPLLVFPLVFVLIPNAKMTDDLIENGDEEG
GTLFVRVPSEDDMEEFEPEDKASAKTTSIPTQQSAPRASTISVETNPTRN
HKDESLAFSTGDDSLASITPGTYQQSGMPSSSQGLGFPSSHVDERGDEII
SERKQ*
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mRNA from alignment at tig00000005_pilon:107311..109216+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2388.t1 ID=Ggra2388.t1|Name=Ggra2388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1906bp|location=Sequence derived from alignment at tig00000005_pilon:107311..109216+ (Gracilaria gracilis GNS1m male)
ATGTTTACCTCCACGCGCCAATTTGCCAGATCCATCGTGCACAACTTCGG
CTGGCACTTTGCGTTATTACTCGTATCCGTGTATATCGGCTTGAAGGGGT
TTATATAGTGAGTAGCAATGCGCCAACTTTATAGCTTCAAACACGTCATC
AGAAAGAGTGCGCTAACGTCGCCACTTCTGAGTCTCGCCATGCAGCCAGC
TTGCGGTTAATGCCGAGCTTCCGTTCTACAAATCGCTTGGAGTTACAGGT
GATAAGTATCAGTCATTCGGCACCGTCGCCAAGACACCATGGGCGCTCAA
GGCCGCCATCGGACTTATATCTGACACGCTTCCTCTTTTTGGTTATCATA
AGCGTTCATACATTGTGCTCGTTTCAATTGCTGGTACCATAGCCTTTTCT
GTTTTGGGTGCCGTCCAGCTCACTCATGTTCTTGCGCCCATTGCCGCCTT
TCTTCTTCTTCTGGGAAATCTACAGCTAGCTGCTGTAGATTTGCTCTGTG
AAGGAAAATATGCAGAGATGATGGTTGCCAAGCCGGAGAGCGGCAGTAGC
CTTGTATCATATGTCTGGGGTTTGTATATGATAGGGTCTTTCTTCGGATC
TCTCATTGCTGGGCCGATGGCCGATCATTTCAACCCGCGCTTCATTTGGC
TCATATGCGTACCGCTCGCAGTTCAAGTTATATTCCCTGTATTAGCCGGG
TGGCTCCCAGAAGAGCGATTACCCCCCGAACAACGCCACCTCAGAATAGA
CAAGATTCGCCAGCATCCTGACCTATTTAAGTTATCTGTTGCAATGACTC
TAGGTGCACTGGCGGTCGGGGTATCCGCTCTTCTTAGCAGTGGATATGTT
CAATCTGTTGTGTCCACTACAACTGCGACAATGCTTTGCGTTCTGGGGTT
AATGTGGCTACCTCGTATGCTTGGTCGAGCCAATTTGTATATGTTTCTCA
GTAGCTTGTTGTACGTGTCCTTGCCCGGTGCACTTGATTATTGGTTCACA
GGCTCAGAAGAGTGTGTACCCGGTGGACCCCACTTCTCCTTCACTTACTA
CGTGACTTACGCTTCGTTAGTTGGAAGCATCGCCGGTGCAGTTGGAGTCG
CTGCGTTTCAACGTTTCCTCAGCAAAGGTAGTTTTCGCACGGCCTTCTGG
ACTACATGTCTTGTGAAGCTAGCTGCTTCCGCTTTTGACATTGCAATCGT
CAAACGATATAATATTTCAGCGGGAATCCCAGACAAGATGGCTTTTCTTC
TGGGCGACGCAATCATTTTTCAAGTCGCGTCAACATTGGATTTTATGCCC
GCAGTGGTACTAACTTCAAAGGTTTGTCCCAAGGGTATGGAAGCTAGTGT
CTATGCATTGCTTGCCTCGTATCAGAACTTAGGAAGCAATGTCTCCCGAA
CGCTTGGAGTCGCGCTTATCGACAGACTCAATATCAAGACTACTTCGCCA
TGTGATTTTACAAATCTGCCTTTGGCCATAGTTATTGCTCATGTTCTGCT
TCCACTTCTAGTATTTCCACTCGTATTCGTTTTGATCCCGAACGCCAAAA
TGACAGATGACTTAATCGAGAACGGGGACGAAGAGGGTGGCACGCTATTT
GTTCGGGTGCCATCTGAAGACGACATGGAAGAATTTGAACCAGAAGACAA
AGCATCAGCAAAAACAACATCGATTCCAACTCAGCAGAGCGCACCTCGAG
CTTCAACGATCTCAGTTGAAACTAATCCTACACGAAATCATAAGGATGAG
TCTCTTGCTTTCAGCACGGGTGACGATTCATTGGCGTCAATCACTCCAGG
AACATATCAACAATCAGGAATGCCATCGTCATCGCAGGGGCTGGGCTTTC
CGTCCAGTCATGTTGACGAAAGAGGAGACGAGATCATATCCGAAAGAAAA
CAATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:107311..109216+

>Ggra2388.t1 ID=Ggra2388.t1|Name=Ggra2388.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1818bp|location=Sequence derived from alignment at tig00000005_pilon:107311..109216+ (Gracilaria gracilis GNS1m male)
ATGTTTACCTCCACGCGCCAATTTGCCAGATCCATCGTGCACAACTTCGG
CTGGCACTTTGCGTTATTACTCGTATCCGTGTATATCGGCTTGAAGGGGT
TTATATACCAGCTTGCGGTTAATGCCGAGCTTCCGTTCTACAAATCGCTT
GGAGTTACAGGTGATAAGTATCAGTCATTCGGCACCGTCGCCAAGACACC
ATGGGCGCTCAAGGCCGCCATCGGACTTATATCTGACACGCTTCCTCTTT
TTGGTTATCATAAGCGTTCATACATTGTGCTCGTTTCAATTGCTGGTACC
ATAGCCTTTTCTGTTTTGGGTGCCGTCCAGCTCACTCATGTTCTTGCGCC
CATTGCCGCCTTTCTTCTTCTTCTGGGAAATCTACAGCTAGCTGCTGTAG
ATTTGCTCTGTGAAGGAAAATATGCAGAGATGATGGTTGCCAAGCCGGAG
AGCGGCAGTAGCCTTGTATCATATGTCTGGGGTTTGTATATGATAGGGTC
TTTCTTCGGATCTCTCATTGCTGGGCCGATGGCCGATCATTTCAACCCGC
GCTTCATTTGGCTCATATGCGTACCGCTCGCAGTTCAAGTTATATTCCCT
GTATTAGCCGGGTGGCTCCCAGAAGAGCGATTACCCCCCGAACAACGCCA
CCTCAGAATAGACAAGATTCGCCAGCATCCTGACCTATTTAAGTTATCTG
TTGCAATGACTCTAGGTGCACTGGCGGTCGGGGTATCCGCTCTTCTTAGC
AGTGGATATGTTCAATCTGTTGTGTCCACTACAACTGCGACAATGCTTTG
CGTTCTGGGGTTAATGTGGCTACCTCGTATGCTTGGTCGAGCCAATTTGT
ATATGTTTCTCAGTAGCTTGTTGTACGTGTCCTTGCCCGGTGCACTTGAT
TATTGGTTCACAGGCTCAGAAGAGTGTGTACCCGGTGGACCCCACTTCTC
CTTCACTTACTACGTGACTTACGCTTCGTTAGTTGGAAGCATCGCCGGTG
CAGTTGGAGTCGCTGCGTTTCAACGTTTCCTCAGCAAAGGTAGTTTTCGC
ACGGCCTTCTGGACTACATGTCTTGTGAAGCTAGCTGCTTCCGCTTTTGA
CATTGCAATCGTCAAACGATATAATATTTCAGCGGGAATCCCAGACAAGA
TGGCTTTTCTTCTGGGCGACGCAATCATTTTTCAAGTCGCGTCAACATTG
GATTTTATGCCCGCAGTGGTACTAACTTCAAAGGTTTGTCCCAAGGGTAT
GGAAGCTAGTGTCTATGCATTGCTTGCCTCGTATCAGAACTTAGGAAGCA
ATGTCTCCCGAACGCTTGGAGTCGCGCTTATCGACAGACTCAATATCAAG
ACTACTTCGCCATGTGATTTTACAAATCTGCCTTTGGCCATAGTTATTGC
TCATGTTCTGCTTCCACTTCTAGTATTTCCACTCGTATTCGTTTTGATCC
CGAACGCCAAAATGACAGATGACTTAATCGAGAACGGGGACGAAGAGGGT
GGCACGCTATTTGTTCGGGTGCCATCTGAAGACGACATGGAAGAATTTGA
ACCAGAAGACAAAGCATCAGCAAAAACAACATCGATTCCAACTCAGCAGA
GCGCACCTCGAGCTTCAACGATCTCAGTTGAAACTAATCCTACACGAAAT
CATAAGGATGAGTCTCTTGCTTTCAGCACGGGTGACGATTCATTGGCGTC
AATCACTCCAGGAACATATCAACAATCAGGAATGCCATCGTCATCGCAGG
GGCTGGGCTTTCCGTCCAGTCATGTTGACGAAAGAGGAGACGAGATCATA
TCCGAAAGAAAACAATAG
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