Ggra2387.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2387.t1
Unique NameGgra2387.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:105506..106642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706288.1
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K14004
KEGG Pathwayko03013,ko04141,ko04150,map03013,map04141,map04150
KEGG ModuleM00404,M00427
GOsGO:0000323,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005730,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008104,GO:0008150,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0023051,GO:0023056,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031080,GO:0031090,GO:0031410,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032991,GO:0033036,GO:0034613,GO:0034622,GO:0035459,GO:0035859,GO:0042175,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0061024,GO:0061700,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1902531,GO:1902533
Evalue1.21e-120
EggNOG OGsKOG1332@1|root,KOG1332@2759|Eukaryota
Descriptionpositive regulation of TORC1 signaling
COG categoryU
BRITEko00000,ko00001,ko00002,ko03019,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2387Ggra2387Gracilaria gracilis GNS1m malegenetig00000005_pilon 105506..106642 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2387.t1Ggra2387.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 105506..106642 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2387.t1.stop1Ggra2387.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 105506..105508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2387.t1.CDS1Ggra2387.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 105506..106486 -
Ggra2387.t1.CDS2Ggra2387.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 106553..106642 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2387.t1.exon1Ggra2387.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 105506..106486 -
Ggra2387.t1.exon2Ggra2387.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 106553..106642 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2387.t1.intron1Ggra2387.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 106487..106552 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2387.t1.start1Ggra2387.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 106640..106642 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2387.t1 ID=Ggra2387.t1|Name=Ggra2387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MAMPPPMMPPTSMAAPPPVGAVSAPVTQQTTPPKSVVETSHADMIHDAQL
DFYGRRLATCSSDRTIKIFQVDKNGSHRHEATLEGHDGPVWQVAWAHPTR
HGRPLLASASHDGRVIVWIEDTPSMWRQYYEYSWHASSVNSVAFAPCEYG
LIFACASSDGFVSICTRLQDGTWDERRVSESVGGHAHTHPLGANSVSWAP
AVAPGGLWMPERAAPPPMRIVTGGCDQMVKVWKFDNDSNNWVLEGKPLKS
HRDMVRCVAWAPNVGLPRSVIASAGQDKKVILWSQEVEGDGISEWTSTEL
DPFSAPVWSVSWSPTGSVLGVACGDDQVTLWKEEMDGTWKKVTNVSSKGT
SVPESS*
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spliced messenger RNA

>Ggra2387.t1 ID=Ggra2387.t1|Name=Ggra2387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000005_pilon:105506..106642- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATGCCACCGCCCATGATGCCGCCGACGTCAATGGCTGCCCCTCC
TCCCGTGGGTGCTGTTTCTGCGCCAGTCACTCAGCAAACGACACCGCCAA
AATCCGTCGTCGAAACCTCCCACGCAGACATGATCCACGACGCGCAGCTC
GATTTCTACGGCCGTCGTTTAGCAACCTGCTCATCAGACCGAACCATCAA
GATTTTCCAGGTTGATAAAAACGGTTCCCATCGTCATGAGGCCACATTAG
AAGGGCATGACGGTCCAGTATGGCAAGTAGCCTGGGCACATCCTACTCGT
CACGGAAGACCTCTTCTTGCATCGGCATCACACGATGGCCGAGTAATCGT
CTGGATAGAAGATACTCCCAGCATGTGGCGACAGTACTACGAGTATTCTT
GGCACGCTTCTTCTGTCAACTCCGTCGCATTTGCACCGTGTGAATACGGT
TTGATCTTTGCGTGTGCCAGCTCGGATGGCTTTGTTTCTATCTGCACCCG
TCTGCAGGATGGAACCTGGGATGAACGTCGCGTAAGTGAATCCGTTGGCG
GTCATGCGCACACACATCCTCTGGGCGCAAATTCGGTTTCTTGGGCACCC
GCAGTTGCGCCGGGTGGTCTTTGGATGCCGGAGCGTGCTGCGCCGCCACC
AATGCGAATTGTCACCGGCGGATGCGATCAAATGGTCAAGGTATGGAAGT
TTGACAATGACTCCAACAACTGGGTTTTAGAAGGGAAACCCCTCAAGTCA
CACCGTGATATGGTTCGATGCGTGGCTTGGGCCCCCAATGTTGGACTGCC
AAGATCAGTTATCGCAAGCGCTGGGCAGGACAAGAAGGTTATTTTGTGGA
GCCAAGAAGTTGAGGGGGACGGTATTTCCGAATGGACCTCTACGGAGCTG
GATCCGTTCTCCGCACCTGTATGGTCTGTAAGCTGGAGTCCCACCGGCAG
TGTGCTTGGTGTGGCATGTGGTGACGACCAAGTTACTCTTTGGAAGGAAG
AAATGGATGGCACATGGAAAAAAGTGACCAACGTGAGCTCAAAAGGTACA
AGTGTTCCTGAAAGCTCATAG
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protein sequence of Ggra2387.t1

>Ggra2387.t1 ID=Ggra2387.t1|Name=Ggra2387.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MAMPPPMMPPTSMAAPPPVGAVSAPVTQQTTPPKSVVETSHADMIHDAQL
DFYGRRLATCSSDRTIKIFQVDKNGSHRHEATLEGHDGPVWQVAWAHPTR
HGRPLLASASHDGRVIVWIEDTPSMWRQYYEYSWHASSVNSVAFAPCEYG
LIFACASSDGFVSICTRLQDGTWDERRVSESVGGHAHTHPLGANSVSWAP
AVAPGGLWMPERAAPPPMRIVTGGCDQMVKVWKFDNDSNNWVLEGKPLKS
HRDMVRCVAWAPNVGLPRSVIASAGQDKKVILWSQEVEGDGISEWTSTEL
DPFSAPVWSVSWSPTGSVLGVACGDDQVTLWKEEMDGTWKKVTNVSSKGT
SVPESS*
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mRNA from alignment at tig00000005_pilon:105506..106642-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2387.t1 ID=Ggra2387.t1|Name=Ggra2387.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000005_pilon:105506..106642- (Gracilaria gracilis GNS1m male)
ATGGCTATGCCACCGCCCATGATGCCGCCGACGTCAATGGCTGCCCCTCC
TCCCGTGGGTGCTGTTTCTGCGCCAGTCACTCAGCAAACGGTGAGTTGAC
CATTTCTTGTCTCCAGCTCGCATCCCCGTCCGCCTTGTACTAACAACTGC
TTGCAGACACCGCCAAAATCCGTCGTCGAAACCTCCCACGCAGACATGAT
CCACGACGCGCAGCTCGATTTCTACGGCCGTCGTTTAGCAACCTGCTCAT
CAGACCGAACCATCAAGATTTTCCAGGTTGATAAAAACGGTTCCCATCGT
CATGAGGCCACATTAGAAGGGCATGACGGTCCAGTATGGCAAGTAGCCTG
GGCACATCCTACTCGTCACGGAAGACCTCTTCTTGCATCGGCATCACACG
ATGGCCGAGTAATCGTCTGGATAGAAGATACTCCCAGCATGTGGCGACAG
TACTACGAGTATTCTTGGCACGCTTCTTCTGTCAACTCCGTCGCATTTGC
ACCGTGTGAATACGGTTTGATCTTTGCGTGTGCCAGCTCGGATGGCTTTG
TTTCTATCTGCACCCGTCTGCAGGATGGAACCTGGGATGAACGTCGCGTA
AGTGAATCCGTTGGCGGTCATGCGCACACACATCCTCTGGGCGCAAATTC
GGTTTCTTGGGCACCCGCAGTTGCGCCGGGTGGTCTTTGGATGCCGGAGC
GTGCTGCGCCGCCACCAATGCGAATTGTCACCGGCGGATGCGATCAAATG
GTCAAGGTATGGAAGTTTGACAATGACTCCAACAACTGGGTTTTAGAAGG
GAAACCCCTCAAGTCACACCGTGATATGGTTCGATGCGTGGCTTGGGCCC
CCAATGTTGGACTGCCAAGATCAGTTATCGCAAGCGCTGGGCAGGACAAG
AAGGTTATTTTGTGGAGCCAAGAAGTTGAGGGGGACGGTATTTCCGAATG
GACCTCTACGGAGCTGGATCCGTTCTCCGCACCTGTATGGTCTGTAAGCT
GGAGTCCCACCGGCAGTGTGCTTGGTGTGGCATGTGGTGACGACCAAGTT
ACTCTTTGGAAGGAAGAAATGGATGGCACATGGAAAAAAGTGACCAACGT
GAGCTCAAAAGGTACAAGTGTTCCTGAAAGCTCATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:105506..106642-

>Ggra2387.t1 ID=Ggra2387.t1|Name=Ggra2387.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000005_pilon:105506..106642- (Gracilaria gracilis GNS1m male)
ATGGCTATGCCACCGCCCATGATGCCGCCGACGTCAATGGCTGCCCCTCC
TCCCGTGGGTGCTGTTTCTGCGCCAGTCACTCAGCAAACGACACCGCCAA
AATCCGTCGTCGAAACCTCCCACGCAGACATGATCCACGACGCGCAGCTC
GATTTCTACGGCCGTCGTTTAGCAACCTGCTCATCAGACCGAACCATCAA
GATTTTCCAGGTTGATAAAAACGGTTCCCATCGTCATGAGGCCACATTAG
AAGGGCATGACGGTCCAGTATGGCAAGTAGCCTGGGCACATCCTACTCGT
CACGGAAGACCTCTTCTTGCATCGGCATCACACGATGGCCGAGTAATCGT
CTGGATAGAAGATACTCCCAGCATGTGGCGACAGTACTACGAGTATTCTT
GGCACGCTTCTTCTGTCAACTCCGTCGCATTTGCACCGTGTGAATACGGT
TTGATCTTTGCGTGTGCCAGCTCGGATGGCTTTGTTTCTATCTGCACCCG
TCTGCAGGATGGAACCTGGGATGAACGTCGCGTAAGTGAATCCGTTGGCG
GTCATGCGCACACACATCCTCTGGGCGCAAATTCGGTTTCTTGGGCACCC
GCAGTTGCGCCGGGTGGTCTTTGGATGCCGGAGCGTGCTGCGCCGCCACC
AATGCGAATTGTCACCGGCGGATGCGATCAAATGGTCAAGGTATGGAAGT
TTGACAATGACTCCAACAACTGGGTTTTAGAAGGGAAACCCCTCAAGTCA
CACCGTGATATGGTTCGATGCGTGGCTTGGGCCCCCAATGTTGGACTGCC
AAGATCAGTTATCGCAAGCGCTGGGCAGGACAAGAAGGTTATTTTGTGGA
GCCAAGAAGTTGAGGGGGACGGTATTTCCGAATGGACCTCTACGGAGCTG
GATCCGTTCTCCGCACCTGTATGGTCTGTAAGCTGGAGTCCCACCGGCAG
TGTGCTTGGTGTGGCATGTGGTGACGACCAAGTTACTCTTTGGAAGGAAG
AAATGGATGGCACATGGAAAAAAGTGACCAACGTGAGCTCAAAAGGTACA
AGTGTTCCTGAAAGCTCATAG
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