Ggra2383.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2383.t1
Unique NameGgra2383.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:93425..93964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15726962
Preferred namePSENEN
PFAMsPEN-2
Max annot lvl33208|Metazoa
KEGG koko:K06170
KEGG Pathwayko04330,ko05010,map04330,map05010
KEGG ModuleM00682
GOsGO:0000003,GO:0001667,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005794,GO:0005886,GO:0005887,GO:0006508,GO:0006509,GO:0006518,GO:0006807,GO:0006928,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007220,GO:0007275,GO:0007276,GO:0007281,GO:0008150,GO:0008152,GO:0009653,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0010631,GO:0010941,GO:0012505,GO:0016020,GO:0016021,GO:0016477,GO:0016485,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0031224,GO:0031226,GO:0031293,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033619,GO:0034205,GO:0034641,GO:0035295,GO:0035333,GO:0040011,GO:0042981,GO:0042982,GO:0042987,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043473,GO:0043523,GO:0043524,GO:0043603,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044703,GO:0045165,GO:0048066,GO:0048468,GO:0048519,GO:0048523,GO:0048565,GO:0048598,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050435,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051604,GO:0051674,GO:0051704,GO:0051716,GO:0055037,GO:0055123,GO:0060465,GO:0060548,GO:0065007,GO:0065009,GO:0070765,GO:0071704,GO:0071944,GO:0090130,GO:0090132,GO:0097324,GO:0097708,GO:0098796,GO:0098797,GO:1901214,GO:1901215,GO:1901564
Evalue5e-08
EggNOG OGsKOG3402@1|root,KOG3402@2759|Eukaryota,3A5JH@33154|Opisthokonta,3BSU5@33208|Metazoa
Descriptionamyloid-beta formation
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2383Ggra2383Gracilaria gracilis GNS1m malegenetig00000005_pilon 93425..93964 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2383.t1.stop1Ggra2383.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 93425..93427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2383.t1.CDS1Ggra2383.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 93425..93964 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2383.t1.exon1Ggra2383.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 93425..93964 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2383.t1.start1Ggra2383.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 93962..93964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2383.t1Ggra2383.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 93425..93964 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2383.t1 ID=Ggra2383.t1|Name=Ggra2383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MPEPQSALRETSQSVFQNMTSPWMQSANVEEPTEEAEELPFEDYKDQISG
LEERVEVKDARKEEARDAARERKIEFEKAQDLVLDRLEDERFQLCRKYFV
VGCFGLPLLLFVNVLHFAKDFKSTSGSFRIRKYLWLSLIVALLEMFLWIL
WFTVFQIVDDDTFETFSIYHSNITFGYLV*
back to top

spliced messenger RNA

>Ggra2383.t1 ID=Ggra2383.t1|Name=Ggra2383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000005_pilon:93425..93964- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAACCACAGTCTGCTCTTAGGGAAACTTCCCAGTCTGTTTTCCA
AAATATGACCAGCCCATGGATGCAAAGTGCGAACGTTGAAGAGCCTACCG
AAGAAGCAGAAGAACTGCCTTTTGAAGACTACAAGGACCAAATATCTGGC
CTCGAAGAACGAGTAGAAGTGAAAGATGCACGTAAGGAAGAAGCACGTGA
TGCTGCTAGAGAGCGAAAGATCGAGTTTGAAAAGGCACAGGACCTTGTTC
TGGATAGGTTGGAGGACGAACGTTTTCAGCTTTGTCGAAAGTATTTCGTG
GTTGGTTGTTTTGGTTTGCCGCTGCTGCTCTTCGTCAACGTTCTTCACTT
CGCCAAAGACTTCAAGTCCACATCAGGCTCTTTTCGTATACGAAAGTACT
TATGGCTCTCTCTTATCGTAGCATTATTAGAAATGTTTCTCTGGATACTT
TGGTTCACCGTGTTTCAGATTGTCGATGATGACACGTTCGAAACATTCAG
CATCTATCACTCAAATATTACCTTCGGATATCTCGTCTGA
back to top

protein sequence of Ggra2383.t1

>Ggra2383.t1 ID=Ggra2383.t1|Name=Ggra2383.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MPEPQSALRETSQSVFQNMTSPWMQSANVEEPTEEAEELPFEDYKDQISG
LEERVEVKDARKEEARDAARERKIEFEKAQDLVLDRLEDERFQLCRKYFV
VGCFGLPLLLFVNVLHFAKDFKSTSGSFRIRKYLWLSLIVALLEMFLWIL
WFTVFQIVDDDTFETFSIYHSNITFGYLV*
back to top

mRNA from alignment at tig00000005_pilon:93425..93964-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2383.t1 ID=Ggra2383.t1|Name=Ggra2383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000005_pilon:93425..93964- (Gracilaria gracilis GNS1m male)
ATGCCGGAACCACAGTCTGCTCTTAGGGAAACTTCCCAGTCTGTTTTCCA
AAATATGACCAGCCCATGGATGCAAAGTGCGAACGTTGAAGAGCCTACCG
AAGAAGCAGAAGAACTGCCTTTTGAAGACTACAAGGACCAAATATCTGGC
CTCGAAGAACGAGTAGAAGTGAAAGATGCACGTAAGGAAGAAGCACGTGA
TGCTGCTAGAGAGCGAAAGATCGAGTTTGAAAAGGCACAGGACCTTGTTC
TGGATAGGTTGGAGGACGAACGTTTTCAGCTTTGTCGAAAGTATTTCGTG
GTTGGTTGTTTTGGTTTGCCGCTGCTGCTCTTCGTCAACGTTCTTCACTT
CGCCAAAGACTTCAAGTCCACATCAGGCTCTTTTCGTATACGAAAGTACT
TATGGCTCTCTCTTATCGTAGCATTATTAGAAATGTTTCTCTGGATACTT
TGGTTCACCGTGTTTCAGATTGTCGATGATGACACGTTCGAAACATTCAG
CATCTATCACTCAAATATTACCTTCGGATATCTCGTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000005_pilon:93425..93964-

>Ggra2383.t1 ID=Ggra2383.t1|Name=Ggra2383.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000005_pilon:93425..93964- (Gracilaria gracilis GNS1m male)
ATGCCGGAACCACAGTCTGCTCTTAGGGAAACTTCCCAGTCTGTTTTCCA
AAATATGACCAGCCCATGGATGCAAAGTGCGAACGTTGAAGAGCCTACCG
AAGAAGCAGAAGAACTGCCTTTTGAAGACTACAAGGACCAAATATCTGGC
CTCGAAGAACGAGTAGAAGTGAAAGATGCACGTAAGGAAGAAGCACGTGA
TGCTGCTAGAGAGCGAAAGATCGAGTTTGAAAAGGCACAGGACCTTGTTC
TGGATAGGTTGGAGGACGAACGTTTTCAGCTTTGTCGAAAGTATTTCGTG
GTTGGTTGTTTTGGTTTGCCGCTGCTGCTCTTCGTCAACGTTCTTCACTT
CGCCAAAGACTTCAAGTCCACATCAGGCTCTTTTCGTATACGAAAGTACT
TATGGCTCTCTCTTATCGTAGCATTATTAGAAATGTTTCTCTGGATACTT
TGGTTCACCGTGTTTCAGATTGTCGATGATGACACGTTCGAAACATTCAG
CATCTATCACTCAAATATTACCTTCGGATATCTCGTCTGA
back to top