Ggra2380.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2380.t1
Unique NameGgra2380.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:88110..89296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705251.1
PFAMsHSP33
Max annot lvl2759|Eukaryota
KEGG koko:K04083
Evalue1.52e-97
EggNOG OGsCOG1281@1|root,2QRJN@2759|Eukaryota
DescriptionHsp33 protein
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2380Ggra2380Gracilaria gracilis GNS1m malegenetig00000005_pilon 88110..89296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2380.t1Ggra2380.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 88110..89296 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2380.t1.stop1Ggra2380.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 88110..88112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2380.t1.CDS1Ggra2380.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 88110..88192 -
Ggra2380.t1.CDS2Ggra2380.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 88267..89296 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2380.t1.exon1Ggra2380.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 88110..88192 -
Ggra2380.t1.exon2Ggra2380.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 88267..89296 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2380.t1.intron1Ggra2380.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 88193..88266 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2380.t1.start1Ggra2380.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 89294..89296 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2380.t1 ID=Ggra2380.t1|Name=Ggra2380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=371bp
MTGARAAFVPQSLSPSSFAPPVPNVLKPLSCPPRRKYPPSTSRTALQPLC
HADNPADPSLHHDDPLPFEKLFLKGPVPGDTLVRTMSANGEVSCSVVACT
GIVSGATKLHRTSPVASTAFGRALSCALLMSSGKKDGETLQVEFRGSGPI
KGITAISNGLGQVRGYVGDPNVQLPLKEGRFDVPGAIGSGIVAVVRDSFY
SKQPYTGIVQISSGQVAEDLAMYLLESEQTPSALGAGVYVSSEGSVTAAG
GYLLQLLPGASPQTAELVEKNVRALGTPTEIIRAGMTPEQIVNELMINLS
PMKLASSSPRYYCQCGVDRVKRTVALIPEIEIRQLLLDHGRIEATCEFCG
QTYRLARDEVEDILSARQEP*
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spliced messenger RNA

>Ggra2380.t1 ID=Ggra2380.t1|Name=Ggra2380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000005_pilon:88110..89296- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGAGCCCGAGCTGCTTTCGTGCCGCAGTCGCTATCGCCGTCTTC
TTTCGCTCCGCCTGTCCCCAACGTGCTGAAGCCGCTCTCCTGTCCGCCCC
GTCGCAAGTATCCCCCCTCCACGTCTCGCACTGCGCTTCAACCATTATGC
CACGCAGACAACCCCGCCGACCCCTCCCTGCATCACGATGACCCTCTCCC
GTTTGAAAAGCTCTTTCTCAAAGGCCCCGTTCCCGGCGATACCCTGGTGC
GAACTATGAGCGCGAATGGTGAGGTGTCGTGCAGCGTCGTGGCATGCACC
GGAATTGTCAGCGGCGCTACCAAGTTGCATCGTACCAGTCCTGTTGCCTC
CACGGCCTTTGGCAGAGCCTTGTCTTGTGCGTTGCTCATGAGCAGTGGGA
AGAAGGATGGCGAGACTCTGCAAGTGGAATTTCGTGGCTCGGGGCCTATC
AAGGGCATCACTGCCATTTCAAACGGCCTAGGGCAGGTCAGAGGTTATGT
TGGCGACCCCAATGTGCAGCTACCGTTGAAAGAAGGCCGTTTTGATGTGC
CTGGTGCGATCGGTTCAGGTATCGTCGCCGTTGTCAGGGATAGCTTTTAT
AGCAAACAGCCATACACTGGCATTGTACAGATTTCCTCCGGCCAGGTCGC
GGAGGACCTTGCCATGTACCTACTCGAATCTGAACAGACTCCTTCAGCCC
TTGGAGCTGGCGTCTACGTCTCCTCGGAAGGCAGCGTTACAGCGGCGGGT
GGATATTTGCTGCAGTTACTTCCCGGCGCTTCGCCCCAAACTGCAGAACT
CGTTGAGAAAAACGTCAGAGCACTGGGAACACCAACAGAGATAATTAGAG
CGGGTATGACGCCAGAACAAATTGTCAATGAGCTCATGATCAATCTTTCG
CCTATGAAGCTTGCTTCGTCATCGCCACGGTACTACTGCCAATGCGGAGT
TGATCGAGTAAAACGAACAGTAGCGCTCATACCGGAAATTGAAATTCGGC
AGCTGCTCTTGGATCATGGCCGCATTGAAGCCACATGCGAATTTTGTGGA
CAGACATATCGCCTGGCTCGTGATGAGGTGGAGGACATTCTTTCGGCCCG
ACAAGAGCCGTAA
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protein sequence of Ggra2380.t1

>Ggra2380.t1 ID=Ggra2380.t1|Name=Ggra2380.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MTGARAAFVPQSLSPSSFAPPVPNVLKPLSCPPRRKYPPSTSRTALQPLC
HADNPADPSLHHDDPLPFEKLFLKGPVPGDTLVRTMSANGEVSCSVVACT
GIVSGATKLHRTSPVASTAFGRALSCALLMSSGKKDGETLQVEFRGSGPI
KGITAISNGLGQVRGYVGDPNVQLPLKEGRFDVPGAIGSGIVAVVRDSFY
SKQPYTGIVQISSGQVAEDLAMYLLESEQTPSALGAGVYVSSEGSVTAAG
GYLLQLLPGASPQTAELVEKNVRALGTPTEIIRAGMTPEQIVNELMINLS
PMKLASSSPRYYCQCGVDRVKRTVALIPEIEIRQLLLDHGRIEATCEFCG
QTYRLARDEVEDILSARQEP*
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mRNA from alignment at tig00000005_pilon:88110..89296-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2380.t1 ID=Ggra2380.t1|Name=Ggra2380.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1187bp|location=Sequence derived from alignment at tig00000005_pilon:88110..89296- (Gracilaria gracilis GNS1m male)
ATGACGGGAGCCCGAGCTGCTTTCGTGCCGCAGTCGCTATCGCCGTCTTC
TTTCGCTCCGCCTGTCCCCAACGTGCTGAAGCCGCTCTCCTGTCCGCCCC
GTCGCAAGTATCCCCCCTCCACGTCTCGCACTGCGCTTCAACCATTATGC
CACGCAGACAACCCCGCCGACCCCTCCCTGCATCACGATGACCCTCTCCC
GTTTGAAAAGCTCTTTCTCAAAGGCCCCGTTCCCGGCGATACCCTGGTGC
GAACTATGAGCGCGAATGGTGAGGTGTCGTGCAGCGTCGTGGCATGCACC
GGAATTGTCAGCGGCGCTACCAAGTTGCATCGTACCAGTCCTGTTGCCTC
CACGGCCTTTGGCAGAGCCTTGTCTTGTGCGTTGCTCATGAGCAGTGGGA
AGAAGGATGGCGAGACTCTGCAAGTGGAATTTCGTGGCTCGGGGCCTATC
AAGGGCATCACTGCCATTTCAAACGGCCTAGGGCAGGTCAGAGGTTATGT
TGGCGACCCCAATGTGCAGCTACCGTTGAAAGAAGGCCGTTTTGATGTGC
CTGGTGCGATCGGTTCAGGTATCGTCGCCGTTGTCAGGGATAGCTTTTAT
AGCAAACAGCCATACACTGGCATTGTACAGATTTCCTCCGGCCAGGTCGC
GGAGGACCTTGCCATGTACCTACTCGAATCTGAACAGACTCCTTCAGCCC
TTGGAGCTGGCGTCTACGTCTCCTCGGAAGGCAGCGTTACAGCGGCGGGT
GGATATTTGCTGCAGTTACTTCCCGGCGCTTCGCCCCAAACTGCAGAACT
CGTTGAGAAAAACGTCAGAGCACTGGGAACACCAACAGAGATAATTAGAG
CGGGTATGACGCCAGAACAAATTGTCAATGAGCTCATGATCAATCTTTCG
CCTATGAAGCTTGCTTCGTCATCGCCACGGTACTACTGCCAATGCGGAGT
TGATCGAGTAAAACGAACAGTAGCGCTCATACCGGAAATTGAAATTCGGC
AGCTGCTCTTGGATCATGGCCGCATTGAAGGTAAGTTTTTTTTTCCTTGT
GTTTTCAGCTGATCATGTCATTGTACTTACCATATCTCTCTTGGTTCCTT
GAAGCCACATGCGAATTTTGTGGACAGACATATCGCCTGGCTCGTGATGA
GGTGGAGGACATTCTTTCGGCCCGACAAGAGCCGTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:88110..89296-

>Ggra2380.t1 ID=Ggra2380.t1|Name=Ggra2380.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000005_pilon:88110..89296- (Gracilaria gracilis GNS1m male)
ATGACGGGAGCCCGAGCTGCTTTCGTGCCGCAGTCGCTATCGCCGTCTTC
TTTCGCTCCGCCTGTCCCCAACGTGCTGAAGCCGCTCTCCTGTCCGCCCC
GTCGCAAGTATCCCCCCTCCACGTCTCGCACTGCGCTTCAACCATTATGC
CACGCAGACAACCCCGCCGACCCCTCCCTGCATCACGATGACCCTCTCCC
GTTTGAAAAGCTCTTTCTCAAAGGCCCCGTTCCCGGCGATACCCTGGTGC
GAACTATGAGCGCGAATGGTGAGGTGTCGTGCAGCGTCGTGGCATGCACC
GGAATTGTCAGCGGCGCTACCAAGTTGCATCGTACCAGTCCTGTTGCCTC
CACGGCCTTTGGCAGAGCCTTGTCTTGTGCGTTGCTCATGAGCAGTGGGA
AGAAGGATGGCGAGACTCTGCAAGTGGAATTTCGTGGCTCGGGGCCTATC
AAGGGCATCACTGCCATTTCAAACGGCCTAGGGCAGGTCAGAGGTTATGT
TGGCGACCCCAATGTGCAGCTACCGTTGAAAGAAGGCCGTTTTGATGTGC
CTGGTGCGATCGGTTCAGGTATCGTCGCCGTTGTCAGGGATAGCTTTTAT
AGCAAACAGCCATACACTGGCATTGTACAGATTTCCTCCGGCCAGGTCGC
GGAGGACCTTGCCATGTACCTACTCGAATCTGAACAGACTCCTTCAGCCC
TTGGAGCTGGCGTCTACGTCTCCTCGGAAGGCAGCGTTACAGCGGCGGGT
GGATATTTGCTGCAGTTACTTCCCGGCGCTTCGCCCCAAACTGCAGAACT
CGTTGAGAAAAACGTCAGAGCACTGGGAACACCAACAGAGATAATTAGAG
CGGGTATGACGCCAGAACAAATTGTCAATGAGCTCATGATCAATCTTTCG
CCTATGAAGCTTGCTTCGTCATCGCCACGGTACTACTGCCAATGCGGAGT
TGATCGAGTAAAACGAACAGTAGCGCTCATACCGGAAATTGAAATTCGGC
AGCTGCTCTTGGATCATGGCCGCATTGAAGCCACATGCGAATTTTGTGGA
CAGACATATCGCCTGGCTCGTGATGAGGTGGAGGACATTCTTTCGGCCCG
ACAAGAGCCGTAA
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