Ggra2374.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2374.t1
Unique NameGgra2374.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:69697..70859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7159.AAEL005725-PA
Preferred nameDPH7
PFAMsWD40
Max annot lvl33208|Metazoa
KEGG rclassRC00460,RC00461
KEGG koko:K17868
KEGG ReactionR11166
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0032451,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070988,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765
Evalue3.42e-38
EggNOG OGsKOG0280@1|root,KOG0280@2759|Eukaryota,38UJD@33154|Opisthokonta,3BH9Y@33208|Metazoa,3D33B@33213|Bilateria,41YSU@6656|Arthropoda,3SM82@50557|Insecta,44XX1@7147|Diptera,45DYI@7148|Nematocera
EC3.1.1.97
DescriptionWD40 repeats
COG categoryE
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2374Ggra2374Gracilaria gracilis GNS1m malegenetig00000005_pilon 69697..70859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2374.t1Ggra2374.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 69697..70859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2374.t1.stop1Ggra2374.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 69697..69699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2374.t1.CDS1Ggra2374.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 69697..69718 -
Ggra2374.t1.CDS2Ggra2374.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 69841..70859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2374.t1.exon1Ggra2374.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 69697..69718 -
Ggra2374.t1.exon2Ggra2374.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 69841..70859 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2374.t1.intron1Ggra2374.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 69719..69840 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2374.t1.start1Ggra2374.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 70857..70859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2374.t1 ID=Ggra2374.t1|Name=Ggra2374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MSLPTGHSLGPIAEPSSKAFFEVTQNVDSIAVLQNTYETEPVRDECLTER
SVSQHIVIGTYVHENHTDSRSVESSSSIRTGSALLVEATRRHNGDSPFSF
HLTKRDEITLPAVLDVQPCQSPRTVYAACAQNELYALSCENEDNHLQSKV
VYKRHENFETMILSLDVYDNEFERVIATSDSKGVVALHRISDIGDAEELF
RRNGHSLEAWTACIDRSVPCSADRTVVYSGGDDGTLCAWRADTDESILRR
RNAHDGVGVTTVATRQGHEHELWSGGYDDTIRIWDTRSLRRCVEELNVGG
GVWRLKFHPRHPEYVLVAAMYDGCKALHFVDDSHLQVVAKHEQKGG*
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spliced messenger RNA

>Ggra2374.t1 ID=Ggra2374.t1|Name=Ggra2374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000005_pilon:69697..70859- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTGCCGACAGGCCACAGTTTAGGACCAATCGCCGAACCGTCATC
AAAGGCATTCTTCGAAGTTACTCAGAATGTTGACTCAATAGCGGTCTTGC
AGAACACATATGAAACGGAACCTGTGAGGGATGAATGCTTGACAGAAAGA
TCTGTCTCCCAACATATAGTGATTGGAACATATGTTCACGAGAATCATAC
TGATAGTCGGAGTGTCGAATCCAGCTCTTCAATTCGGACAGGGTCCGCTT
TGCTCGTGGAGGCCACAAGGAGACACAACGGAGACTCCCCATTCTCATTT
CACCTTACAAAGCGTGATGAAATTACCCTGCCCGCAGTCCTAGATGTACA
ACCTTGCCAATCACCGAGGACTGTATACGCCGCTTGTGCGCAGAACGAAT
TATATGCCTTGAGTTGCGAAAATGAAGACAATCATCTGCAGTCAAAGGTC
GTTTACAAACGCCACGAGAACTTTGAAACCATGATACTCTCACTTGATGT
CTATGACAACGAGTTTGAGAGGGTCATTGCCACATCCGACTCCAAAGGTG
TTGTTGCTCTGCATCGTATCTCAGATATTGGCGATGCCGAAGAGCTGTTT
CGTCGGAATGGACACTCGCTAGAGGCTTGGACAGCTTGCATAGACCGATC
AGTCCCATGTAGTGCGGACCGGACTGTAGTGTACTCTGGTGGTGACGACG
GCACCCTGTGTGCATGGCGTGCTGACACAGATGAGAGCATCCTTAGACGT
CGCAATGCCCATGATGGAGTCGGGGTAACGACAGTTGCCACTCGTCAAGG
ACACGAGCATGAACTTTGGAGCGGTGGGTACGACGACACTATACGCATAT
GGGACACTCGTTCTTTGCGTCGATGTGTGGAGGAACTGAACGTGGGAGGT
GGTGTTTGGCGGCTGAAATTTCACCCCCGCCACCCAGAGTACGTTCTGGT
CGCGGCCATGTACGATGGATGCAAGGCGCTGCACTTCGTTGATGATAGTC
ATTTACAAGTGGTAGCCAAACATGAGCAAAAGGGAGGATAG
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protein sequence of Ggra2374.t1

>Ggra2374.t1 ID=Ggra2374.t1|Name=Ggra2374.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MSLPTGHSLGPIAEPSSKAFFEVTQNVDSIAVLQNTYETEPVRDECLTER
SVSQHIVIGTYVHENHTDSRSVESSSSIRTGSALLVEATRRHNGDSPFSF
HLTKRDEITLPAVLDVQPCQSPRTVYAACAQNELYALSCENEDNHLQSKV
VYKRHENFETMILSLDVYDNEFERVIATSDSKGVVALHRISDIGDAEELF
RRNGHSLEAWTACIDRSVPCSADRTVVYSGGDDGTLCAWRADTDESILRR
RNAHDGVGVTTVATRQGHEHELWSGGYDDTIRIWDTRSLRRCVEELNVGG
GVWRLKFHPRHPEYVLVAAMYDGCKALHFVDDSHLQVVAKHEQKGG*
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mRNA from alignment at tig00000005_pilon:69697..70859-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2374.t1 ID=Ggra2374.t1|Name=Ggra2374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1163bp|location=Sequence derived from alignment at tig00000005_pilon:69697..70859- (Gracilaria gracilis GNS1m male)
ATGTCATTGCCGACAGGCCACAGTTTAGGACCAATCGCCGAACCGTCATC
AAAGGCATTCTTCGAAGTTACTCAGAATGTTGACTCAATAGCGGTCTTGC
AGAACACATATGAAACGGAACCTGTGAGGGATGAATGCTTGACAGAAAGA
TCTGTCTCCCAACATATAGTGATTGGAACATATGTTCACGAGAATCATAC
TGATAGTCGGAGTGTCGAATCCAGCTCTTCAATTCGGACAGGGTCCGCTT
TGCTCGTGGAGGCCACAAGGAGACACAACGGAGACTCCCCATTCTCATTT
CACCTTACAAAGCGTGATGAAATTACCCTGCCCGCAGTCCTAGATGTACA
ACCTTGCCAATCACCGAGGACTGTATACGCCGCTTGTGCGCAGAACGAAT
TATATGCCTTGAGTTGCGAAAATGAAGACAATCATCTGCAGTCAAAGGTC
GTTTACAAACGCCACGAGAACTTTGAAACCATGATACTCTCACTTGATGT
CTATGACAACGAGTTTGAGAGGGTCATTGCCACATCCGACTCCAAAGGTG
TTGTTGCTCTGCATCGTATCTCAGATATTGGCGATGCCGAAGAGCTGTTT
CGTCGGAATGGACACTCGCTAGAGGCTTGGACAGCTTGCATAGACCGATC
AGTCCCATGTAGTGCGGACCGGACTGTAGTGTACTCTGGTGGTGACGACG
GCACCCTGTGTGCATGGCGTGCTGACACAGATGAGAGCATCCTTAGACGT
CGCAATGCCCATGATGGAGTCGGGGTAACGACAGTTGCCACTCGTCAAGG
ACACGAGCATGAACTTTGGAGCGGTGGGTACGACGACACTATACGCATAT
GGGACACTCGTTCTTTGCGTCGATGTGTGGAGGAACTGAACGTGGGAGGT
GGTGTTTGGCGGCTGAAATTTCACCCCCGCCACCCAGAGTACGTTCTGGT
CGCGGCCATGTACGATGGATGCAAGGCGCTGCACTTCGTTGATGATAGTC
ATTTACAAGTGGTAGCCAAGTTTGAAGCGCATAAATCGATTGCATACGGC
GCAAGCTGGTTGCCGAGTTTAGACTCAAGGCAGGAATTAGTTGCGATAAC
AGGCTCATTCTATGATCATGCTGTGCACATATGGAGCATAGACATGAGCA
AAAGGGAGGATAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:69697..70859-

>Ggra2374.t1 ID=Ggra2374.t1|Name=Ggra2374.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000005_pilon:69697..70859- (Gracilaria gracilis GNS1m male)
ATGTCATTGCCGACAGGCCACAGTTTAGGACCAATCGCCGAACCGTCATC
AAAGGCATTCTTCGAAGTTACTCAGAATGTTGACTCAATAGCGGTCTTGC
AGAACACATATGAAACGGAACCTGTGAGGGATGAATGCTTGACAGAAAGA
TCTGTCTCCCAACATATAGTGATTGGAACATATGTTCACGAGAATCATAC
TGATAGTCGGAGTGTCGAATCCAGCTCTTCAATTCGGACAGGGTCCGCTT
TGCTCGTGGAGGCCACAAGGAGACACAACGGAGACTCCCCATTCTCATTT
CACCTTACAAAGCGTGATGAAATTACCCTGCCCGCAGTCCTAGATGTACA
ACCTTGCCAATCACCGAGGACTGTATACGCCGCTTGTGCGCAGAACGAAT
TATATGCCTTGAGTTGCGAAAATGAAGACAATCATCTGCAGTCAAAGGTC
GTTTACAAACGCCACGAGAACTTTGAAACCATGATACTCTCACTTGATGT
CTATGACAACGAGTTTGAGAGGGTCATTGCCACATCCGACTCCAAAGGTG
TTGTTGCTCTGCATCGTATCTCAGATATTGGCGATGCCGAAGAGCTGTTT
CGTCGGAATGGACACTCGCTAGAGGCTTGGACAGCTTGCATAGACCGATC
AGTCCCATGTAGTGCGGACCGGACTGTAGTGTACTCTGGTGGTGACGACG
GCACCCTGTGTGCATGGCGTGCTGACACAGATGAGAGCATCCTTAGACGT
CGCAATGCCCATGATGGAGTCGGGGTAACGACAGTTGCCACTCGTCAAGG
ACACGAGCATGAACTTTGGAGCGGTGGGTACGACGACACTATACGCATAT
GGGACACTCGTTCTTTGCGTCGATGTGTGGAGGAACTGAACGTGGGAGGT
GGTGTTTGGCGGCTGAAATTTCACCCCCGCCACCCAGAGTACGTTCTGGT
CGCGGCCATGTACGATGGATGCAAGGCGCTGCACTTCGTTGATGATAGTC
ATTTACAAGTGGTAGCCAAACATGAGCAAAAGGGAGGATAG
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