Ggra2367.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2367.t1
Unique NameGgra2367.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length599
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:52093..55617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708900.1
PFAMsGlyco_tran_28_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K03715
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,map00561,map01100
Evalue6.09e-33
EggNOG OGs2D48I@1|root,2SU9I@2759|Eukaryota
EC2.4.1.46
CAZyGT28
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2367Ggra2367Gracilaria gracilis GNS1m malegenetig00000005_pilon 52093..55617 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2367.t1Ggra2367.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 52093..55617 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2367.t1.stop1Ggra2367.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 52093..52095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2367.t1.CDS1Ggra2367.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 52093..52312 -
Ggra2367.t1.CDS2Ggra2367.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 52427..52712 -
Ggra2367.t1.CDS3Ggra2367.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 54162..55086 -
Ggra2367.t1.CDS4Ggra2367.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000005_pilon 55131..55155 -
Ggra2367.t1.CDS5Ggra2367.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000005_pilon 55277..55617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2367.t1.exon1Ggra2367.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 52093..52312 -
Ggra2367.t1.exon2Ggra2367.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 52427..52712 -
Ggra2367.t1.exon3Ggra2367.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 54162..55086 -
Ggra2367.t1.exon4Ggra2367.t1.exon4Gracilaria gracilis GNS1m maleexontig00000005_pilon 55131..55155 -
Ggra2367.t1.exon5Ggra2367.t1.exon5Gracilaria gracilis GNS1m maleexontig00000005_pilon 55277..55617 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2367.t1.intron1Ggra2367.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 52313..52426 -
Ggra2367.t1.intron2Ggra2367.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 52713..54161 -
Ggra2367.t1.intron3Ggra2367.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000005_pilon 55087..55130 -
Ggra2367.t1.intron4Ggra2367.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000005_pilon 55156..55276 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2367.t1.start1Ggra2367.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 55615..55617 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2367.t1 ID=Ggra2367.t1|Name=Ggra2367.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=599bp
MTHRTAAVPSPRAPLVLLLYGSGGGGHKASARAVHTALNASSPVASGAVR
VQMLDASERAGGSSGDWFYNVLLSHNAVAAIELFHSAVQFFWPLAAVPLR
SNFRTFWENFAHLNIRDSTSLRPPHVPSPSMCVTNTSGMVVHPRFYNHLS
STARKQQLARLNLHQHYPTVLILFGGAPPTDTVMDLVRRFSSRPPPNGMN
VIAVCASNKLLFDRLTRWKQARPNASLCVTGFTDQIPMLMQISDVLVGKP
GPGVVSEAFVSGLPLILITGNSGAKVMKQEKDVLHWVLSKGIASIVHSCK
QAAAVTLTQISQMREAIDSMEPNNAVFEVRDLILNKLGLCTPPDTQRHQR
RHLQTQDRREPQQAYQLQSQSVIIEALSNPGREQDSRESETLPVTNGTPI
PTNRASPSVSEERHDVHGSPVGMGSRRRMDTCGYDGNVSEDDPGNEGWKY
SFYNEKNRWVASVDYQYLRTCNEKEADFVEEDVPKLWSSENNRSVVADNT
HPSREVVNQNGWSTCSPPISSDVKVEDETIFRDPKDELLRRSDVLLFISS
AILAAWFLMENWESPWTLAYATRGSVIGVVVLLLIAVLSEMSVSFVQV*
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spliced messenger RNA

>Ggra2367.t1 ID=Ggra2367.t1|Name=Ggra2367.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1797bp|location=Sequence derived from alignment at tig00000005_pilon:52093..55617- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCACCGTACAGCCGCCGTCCCGTCGCCACGCGCCCCGCTCGTCCT
GCTGCTGTACGGCTCCGGTGGCGGCGGCCACAAGGCGTCCGCCCGAGCCG
TGCACACCGCGCTTAACGCCTCCTCGCCCGTCGCCAGCGGCGCCGTCCGC
GTGCAGATGTTGGACGCTTCCGAGCGCGCGGGCGGTTCCTCTGGCGACTG
GTTCTACAACGTGCTGCTCTCGCATAATGCCGTCGCTGCCATTGAGCTCT
TTCACTCCGCCGTGCAGTTCTTCTGGCCGCTGGCGGCCGTCCCTCTGCGC
TCCAACTTTCGCACCTTCTGGGAAAACTTCGCCCATTTAAACATCCGCGA
CAGCACATCGTTGCGGCCCCCGCACGTCCCATCGCCGTCCATGTGCGTCA
CCAACACCTCGGGTATGGTTGTTCACCCCCGCTTTTACAACCATCTGTCC
TCCACGGCGCGCAAGCAGCAACTGGCTCGCCTCAATTTGCATCAGCATTA
CCCCACCGTGCTCATCCTCTTCGGCGGCGCCCCACCGACCGATACAGTCA
TGGATCTCGTCCGCCGCTTTTCGTCACGGCCTCCGCCAAATGGAATGAAC
GTCATAGCGGTATGCGCAAGCAATAAGCTTCTGTTTGATCGTCTCACACG
ATGGAAACAAGCCCGGCCCAATGCTTCATTGTGTGTCACGGGATTCACCG
ATCAAATTCCAATGTTGATGCAAATATCAGATGTTCTTGTCGGAAAGCCA
GGACCGGGCGTTGTTTCGGAGGCCTTTGTTAGTGGCTTACCATTGATTCT
CATTACCGGAAACAGCGGTGCAAAGGTCATGAAACAAGAAAAGGATGTTC
TGCACTGGGTCCTTTCTAAGGGCATTGCTTCAATTGTGCATTCATGCAAA
CAAGCGGCTGCCGTTACATTGACTCAGATTTCTCAAATGAGGGAAGCAAT
TGACAGCATGGAACCAAATAATGCTGTTTTCGAAGTTCGAGACCTTATCC
TGAACAAGCTGGGTCTGTGCACCCCACCCGATACGCAAAGGCACCAACGG
CGACATCTACAAACGCAAGATCGACGTGAACCGCAACAAGCGTATCAATT
GCAATCTCAAAGTGTCATCATTGAGGCACTGTCGAATCCCGGCAGAGAAC
AAGATTCTCGCGAAAGCGAGACTCTCCCAGTCACAAACGGTACACCCATT
CCAACAAACCGAGCCTCGCCCTCTGTGTCAGAAGAGCGTCACGATGTCCA
CGGCTCCCCAGTTGGAATGGGCAGCCGACGACGCATGGATACCTGTGGGT
ACGACGGTAATGTGAGTGAAGATGATCCTGGAAATGAAGGTTGGAAATAC
TCCTTTTATAATGAGAAGAACAGGTGGGTTGCATCTGTTGACTATCAATA
CTTGAGAACGTGTAATGAAAAAGAAGCCGACTTCGTAGAGGAAGATGTAC
CGAAACTATGGTCTTCAGAGAATAATAGAAGTGTTGTGGCAGATAATACA
CATCCTTCTCGAGAGGTCGTTAATCAAAATGGGTGGAGCACTTGTTCCCC
TCCGATATCATCAGACGTGAAAGTGGAAGACGAAACAATTTTCCGAGACC
CGAAAGACGAGTTGCTAAGGCGTTCAGATGTGCTTCTCTTCATATCTTCT
GCGATCTTAGCGGCATGGTTCCTCATGGAAAATTGGGAAAGTCCGTGGAC
TTTAGCGTATGCGACTAGAGGTTCTGTGATTGGGGTCGTGGTGTTGTTGC
TCATTGCGGTACTTTCCGAAATGTCCGTTTCATTCGTTCAGGTTTAG
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protein sequence of Ggra2367.t1

>Ggra2367.t1 ID=Ggra2367.t1|Name=Ggra2367.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=599bp
MTHRTAAVPSPRAPLVLLLYGSGGGGHKASARAVHTALNASSPVASGAVR
VQMLDASERAGGSSGDWFYNVLLSHNAVAAIELFHSAVQFFWPLAAVPLR
SNFRTFWENFAHLNIRDSTSLRPPHVPSPSMCVTNTSGMVVHPRFYNHLS
STARKQQLARLNLHQHYPTVLILFGGAPPTDTVMDLVRRFSSRPPPNGMN
VIAVCASNKLLFDRLTRWKQARPNASLCVTGFTDQIPMLMQISDVLVGKP
GPGVVSEAFVSGLPLILITGNSGAKVMKQEKDVLHWVLSKGIASIVHSCK
QAAAVTLTQISQMREAIDSMEPNNAVFEVRDLILNKLGLCTPPDTQRHQR
RHLQTQDRREPQQAYQLQSQSVIIEALSNPGREQDSRESETLPVTNGTPI
PTNRASPSVSEERHDVHGSPVGMGSRRRMDTCGYDGNVSEDDPGNEGWKY
SFYNEKNRWVASVDYQYLRTCNEKEADFVEEDVPKLWSSENNRSVVADNT
HPSREVVNQNGWSTCSPPISSDVKVEDETIFRDPKDELLRRSDVLLFISS
AILAAWFLMENWESPWTLAYATRGSVIGVVVLLLIAVLSEMSVSFVQV*
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mRNA from alignment at tig00000005_pilon:52093..55617-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2367.t1 ID=Ggra2367.t1|Name=Ggra2367.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3525bp|location=Sequence derived from alignment at tig00000005_pilon:52093..55617- (Gracilaria gracilis GNS1m male)
ATGACCCACCGTACAGCCGCCGTCCCGTCGCCACGCGCCCCGCTCGTCCT
GCTGCTGTACGGCTCCGGTGGCGGCGGCCACAAGGCGTCCGCCCGAGCCG
TGCACACCGCGCTTAACGCCTCCTCGCCCGTCGCCAGCGGCGCCGTCCGC
GTGCAGATGTTGGACGCTTCCGAGCGCGCGGGCGGTTCCTCTGGCGACTG
GTTCTACAACGTGCTGCTCTCGCATAATGCCGTCGCTGCCATTGAGCTCT
TTCACTCCGCCGTGCAGTTCTTCTGGCCGCTGGCGGCCGTCCCTCTGCGC
TCCAACTTTCGCACCTTCTGGGAAAACTTCGCCCATTTAAAGTGCGTGGT
GTCCTTCGTTCCTATGCTCAATGCTGTCTTCGCCGACACCCTACCACCGC
ACGTCCACCTCATCACCGTTCTCACTGATTTTTCGCACACTTACACCCAC
CCCTGGATACAGCATCCGCGACAGCACATCGTTGCGGGTACGCAAGTTGC
GTACGCACAGGCCCTTTCGCATGCTTTTCAGCCCCCGCACGTCCCATCGC
CGTCCATGTGCGTCACCAACACCTCGGGTATGGTTGTTCACCCCCGCTTT
TACAACCATCTGTCCTCCACGGCGCGCAAGCAGCAACTGGCTCGCCTCAA
TTTGCATCAGCATTACCCCACCGTGCTCATCCTCTTCGGCGGCGCCCCAC
CGACCGATACAGTCATGGATCTCGTCCGCCGCTTTTCGTCACGGCCTCCG
CCAAATGGAATGAACGTCATAGCGGTATGCGCAAGCAATAAGCTTCTGTT
TGATCGTCTCACACGATGGAAACAAGCCCGGCCCAATGCTTCATTGTGTG
TCACGGGATTCACCGATCAAATTCCAATGTTGATGCAAATATCAGATGTT
CTTGTCGGAAAGCCAGGACCGGGCGTTGTTTCGGAGGCCTTTGTTAGTGG
CTTACCATTGATTCTCATTACCGGAAACAGCGGTGCAAAGGTCATGAAAC
AAGAAAAGGATGTTCTGCACTGGGTCCTTTCTAAGGGCATTGCTTCAATT
GTGCATTCATGCAAACAAGCGGCTGCCGTTACATTGACTCAGATTTCTCA
AATGAGGGAAGCAATTGACAGCATGGAACCAAATAATGCTGTTTTCGAAG
TTCGAGACCTTATCCTGAACAAGCTGGGTCTGTGCACCCCACCCGATACG
CAAAGGCACCAACGGCGACATCTACAAACGCAAGATCGACGTGAACCGCA
ACAAGCGTATCAATTGCAATCTCAAAGTGTCATCATTGAGGCACTGTCGA
ATCCCGGCAGAGAACAAGATTCTCGCGAAAGCGAGACTCTCCCAGTCACA
AACGGTACACCCATTCCAACAAACCGAGCCTCGCCCTCTGTGTCAGAAGA
GCGTCACGATGTCCACGGCTCCCCAGTTGGAATGGGCAGCCGACGACGCA
TGGATAGTCTGTCTCCGACGACAATTACTGCTTTACCATCACGTCATATC
TAACTTAATGTGTCCTTCAATTCGTAATAGCTGCTTGCTTGGAGTTCTGC
TGCATATTATTTTCGTCTGCGCAGGAAAGCAGCTGAATAACGTAGGGTGT
TCGTATCCGGGAGATAAGCTATATCGCTACATTTTCTTCTACCCTGCGAT
GCAGTTCAAAGCATCCTCAAGAGTTTGACTTTCGTTTTCGAGTGCTCTTG
TTATGCGTTTTATTTTGTGGCTTGGGCTCTTGCTCATGCCTGTACAATAT
GGCCCTTTATCGTAGCTTTTGTTTTCCTGGCGCTCTATGCAGCTTCGAAT
ACAGCTTCGAATACAGCTTCGATATCTTACTTATGTGTATAGCGAAGAGC
GGCAGTTCTTCGCGACGGGGAATCTATTCGGCATGTTATATCTCACTGTC
ACCTATATGCTGAAGAGATTCGCCCAGCTTTGTCTCAGCTATGCACCCCT
TACTCTGTTGTAGACTTTCGTACTTTATACACCAGTTACGTCTTGGTTTG
TTGAACCAGTATTGGCTTTCGTGTTCTGCTGTAAGACACGCTTTTCTTAT
ACACGTAGTTTTCCTTTGTTGCCGTGACCCCACTGCTTTAGGATAGGATC
TGGGTTCCACCGTGGGGGAAACCCTAAGGAGGGAGAGGGCTCAGGCTCTT
CGTGTTGAAACCGAAGTGTAAAAACGCGACTATTCACGACGTACGCTTCA
ATGTTGAGTGACTTATTCCTAGCACCCTGCCTAATGACAAACTGATTTAA
TCTCATACAAGATGCCGATGGATTGGTACAATCCGCCACCATACGCAGCA
TGTGTTTCATGCTTGGTACTCTTGTTAGTGGCCTCCTCTGTTTCACGGCG
TATGCCACGGTTCTGGATGCTGTCACTCGCCGCTCCTCGCGACTTGTTCA
ATTGTTTGGACCGCCTGAAGGCGTTAGCAGAAAAGACCGTTGGAGAGATG
TCCTGGTTACCGCTTTAAGGATTTCATGAGAAGGTAATCTACCTCAAAAC
GCCGTTCGCCACTCGTTGAGACCAGGACCTTTGTCAGCGGCCTTCCAAGA
TGTTTTTTATATGAATATCTCTGAAGCCATTGAACGAAATGGAATTCTTG
AGTATGCTAAACGAGAAGAGTATGTAGCTCTATGCGATCATGATAACTGT
CAAATTGCCTCCAACGGTTTCGGTACTATCGGAAGGGTTAATTTTTCCTT
TTCAAACCTTGAAGACGAATCTTATGTTTATGGGAGCGCAGATCAAGTAA
TGGTTTCGTGTGCATGTGTCGGTTCCACTTGTTCGGAATCGGTTCTCATG
CGCCCCGTTGCATATGATGAAGGAGGTACTGAAGGCTTCTGCTTATTCGA
AATGCTCGATGGCAAATTCTCTGACTGTAGCTCTGAAACGCTTCATGTTT
CAAAGCCTGTGGGTACGACGGTAATGTGAGTGAAGATGATCCTGGAAATG
AAGGTTGGAAATACTCCTTTTATAATGAGAAGAACAGGTGGGTTGCATCT
GTTGACTATCAATACTTGAGAACGTGTAATGAAAAAGAAGCCGACTTCGT
AGAGGAAGATGTACCGAAACTATGGTCTTCAGAGAATAATAGAAGTGTTG
TGGCAGATAATACACATCCTTCTCGAGAGGTCGTTAATCAAAATGGGTGG
AGCACTTGTTCCCCTCCGATATCATCAGACGTGAAAGTGGAGTAAGTTCG
GGATGCAAACTTGAGTAGGAGTGAACAGTGTTTTCAAACCTATCGAATTG
TGCTTGAATCGGCCATAACTCAAGCACTTCAACAATTTGAAGTAACTACC
GATAGAGACGAAACAATTTTCCGAGACCCGAAAGACGAGTTGCTAAGGCG
TTCAGATGTGCTTCTCTTCATATCTTCTGCGATCTTAGCGGCATGGTTCC
TCATGGAAAATTGGGAAAGTCCGTGGACTTTAGCGTATGCGACTAGAGGT
TCTGTGATTGGGGTCGTGGTGTTGTTGCTCATTGCGGTACTTTCCGAAAT
GTCCGTTTCATTCGTTCAGGTTTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:52093..55617-

>Ggra2367.t1 ID=Ggra2367.t1|Name=Ggra2367.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1797bp|location=Sequence derived from alignment at tig00000005_pilon:52093..55617- (Gracilaria gracilis GNS1m male)
ATGACCCACCGTACAGCCGCCGTCCCGTCGCCACGCGCCCCGCTCGTCCT
GCTGCTGTACGGCTCCGGTGGCGGCGGCCACAAGGCGTCCGCCCGAGCCG
TGCACACCGCGCTTAACGCCTCCTCGCCCGTCGCCAGCGGCGCCGTCCGC
GTGCAGATGTTGGACGCTTCCGAGCGCGCGGGCGGTTCCTCTGGCGACTG
GTTCTACAACGTGCTGCTCTCGCATAATGCCGTCGCTGCCATTGAGCTCT
TTCACTCCGCCGTGCAGTTCTTCTGGCCGCTGGCGGCCGTCCCTCTGCGC
TCCAACTTTCGCACCTTCTGGGAAAACTTCGCCCATTTAAACATCCGCGA
CAGCACATCGTTGCGGCCCCCGCACGTCCCATCGCCGTCCATGTGCGTCA
CCAACACCTCGGGTATGGTTGTTCACCCCCGCTTTTACAACCATCTGTCC
TCCACGGCGCGCAAGCAGCAACTGGCTCGCCTCAATTTGCATCAGCATTA
CCCCACCGTGCTCATCCTCTTCGGCGGCGCCCCACCGACCGATACAGTCA
TGGATCTCGTCCGCCGCTTTTCGTCACGGCCTCCGCCAAATGGAATGAAC
GTCATAGCGGTATGCGCAAGCAATAAGCTTCTGTTTGATCGTCTCACACG
ATGGAAACAAGCCCGGCCCAATGCTTCATTGTGTGTCACGGGATTCACCG
ATCAAATTCCAATGTTGATGCAAATATCAGATGTTCTTGTCGGAAAGCCA
GGACCGGGCGTTGTTTCGGAGGCCTTTGTTAGTGGCTTACCATTGATTCT
CATTACCGGAAACAGCGGTGCAAAGGTCATGAAACAAGAAAAGGATGTTC
TGCACTGGGTCCTTTCTAAGGGCATTGCTTCAATTGTGCATTCATGCAAA
CAAGCGGCTGCCGTTACATTGACTCAGATTTCTCAAATGAGGGAAGCAAT
TGACAGCATGGAACCAAATAATGCTGTTTTCGAAGTTCGAGACCTTATCC
TGAACAAGCTGGGTCTGTGCACCCCACCCGATACGCAAAGGCACCAACGG
CGACATCTACAAACGCAAGATCGACGTGAACCGCAACAAGCGTATCAATT
GCAATCTCAAAGTGTCATCATTGAGGCACTGTCGAATCCCGGCAGAGAAC
AAGATTCTCGCGAAAGCGAGACTCTCCCAGTCACAAACGGTACACCCATT
CCAACAAACCGAGCCTCGCCCTCTGTGTCAGAAGAGCGTCACGATGTCCA
CGGCTCCCCAGTTGGAATGGGCAGCCGACGACGCATGGATACCTGTGGGT
ACGACGGTAATGTGAGTGAAGATGATCCTGGAAATGAAGGTTGGAAATAC
TCCTTTTATAATGAGAAGAACAGGTGGGTTGCATCTGTTGACTATCAATA
CTTGAGAACGTGTAATGAAAAAGAAGCCGACTTCGTAGAGGAAGATGTAC
CGAAACTATGGTCTTCAGAGAATAATAGAAGTGTTGTGGCAGATAATACA
CATCCTTCTCGAGAGGTCGTTAATCAAAATGGGTGGAGCACTTGTTCCCC
TCCGATATCATCAGACGTGAAAGTGGAAGACGAAACAATTTTCCGAGACC
CGAAAGACGAGTTGCTAAGGCGTTCAGATGTGCTTCTCTTCATATCTTCT
GCGATCTTAGCGGCATGGTTCCTCATGGAAAATTGGGAAAGTCCGTGGAC
TTTAGCGTATGCGACTAGAGGTTCTGTGATTGGGGTCGTGGTGTTGTTGC
TCATTGCGGTACTTTCCGAAATGTCCGTTTCATTCGTTCAGGTTTAG
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