Ggra2364.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2364.t1
Unique Name	Ggra2364.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000005_pilon	contig	tig00000005_pilon:39546..40496 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDO99376
Max annot lvl	3041\|Chlorophyta
Evalue	5.75e-21
EggNOG OGs	2E8R3@1\|root,2SR6I@2759\|Eukaryota,380JN@33090\|Viridiplantae,34MGS@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2364	Ggra2364	Gracilaria gracilis GNS1m male	gene	tig00000005_pilon 39546..40496 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2364.t1.start1	Ggra2364.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000005_pilon 39546..39548 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2364.t1.CDS1	Ggra2364.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000005_pilon 39546..40496 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2364.t1.exon1	Ggra2364.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000005_pilon 39546..40496 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2364.t1.stop1	Ggra2364.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000005_pilon 40494..40496 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2364.t1	Ggra2364.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000005_pilon 39546..40496 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000005_pilon:39546..40496+
coding sequence from alignment at tig00000005_pilon:39546..40496+

mRNA sequence

>Ggra2364.t1 ID=Ggra2364.t1|Name=Ggra2364.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=317bp
MTARGAAARCKSIGWVGSAFAYLACILRLTATCAGVLRGGGVRAALLPLL
RLARGLRLVLERLSNDDVLKGESMCPGEDVVQRALRYPYERPAGSFTFVN
GSCVPFERETTSLSRLHVVLAIGSNAAPEQLLRKYGKSAQPMHVVAVQVH
GMDVVYGALMAPYGSIPATVASSDANSACSIHASLLTDEHLQQMHQTESG
YYFCKLLPNKGVRVLMEGRPLSQPVFAYVARNGPFCVNGRPVALAEIRAE
GRALEQLTQTQMMHAVRQHVGDALPLEQFVLANVKHKHRRRAIAQQLKSN
AQLEDCWQLQLDLGRQ*

spliced messenger RNA

>Ggra2364.t1 ID=Ggra2364.t1|Name=Ggra2364.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000005_pilon:39546..40496+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCGCGCGGCGCGGCGGCGCGCTGCAAATCGATTGGATGGGTTGG
CTCGGCGTTTGCATATCTCGCGTGTATCTTGCGGTTGACCGCCACGTGTG
CTGGTGTGCTACGTGGCGGTGGTGTTCGCGCTGCGCTGCTCCCGTTGTTG
CGGCTTGCTCGCGGCTTGCGCTTGGTGTTGGAAAGACTTTCGAACGACGA
CGTGCTCAAAGGTGAAAGCATGTGCCCGGGCGAGGATGTGGTGCAGCGCG
CGCTGCGATACCCGTACGAACGACCGGCGGGAAGCTTCACGTTTGTGAAT
GGCAGCTGCGTGCCGTTTGAGCGGGAGACGACCAGCTTGTCGCGGCTGCA
CGTGGTGCTGGCCATCGGCTCCAACGCCGCGCCGGAGCAGCTGCTGCGCA
AGTACGGCAAGAGCGCGCAGCCGATGCACGTGGTGGCGGTGCAAGTGCAC
GGCATGGACGTGGTGTACGGCGCGCTGATGGCGCCGTACGGCAGCATTCC
CGCCACGGTGGCCAGCAGCGACGCCAACAGCGCGTGCAGCATCCACGCGT
CGTTGCTCACGGACGAGCACTTGCAGCAGATGCACCAAACCGAGAGCGGC
TATTACTTTTGCAAACTGCTGCCCAACAAGGGCGTGCGCGTGCTGATGGA
AGGGCGCCCGCTGTCGCAGCCGGTGTTTGCGTACGTGGCGCGTAACGGCC
CGTTTTGCGTGAACGGCAGACCGGTGGCGCTTGCGGAGATCCGCGCGGAA
GGACGCGCGTTGGAACAACTCACGCAGACGCAGATGATGCACGCCGTGCG
TCAGCACGTGGGCGACGCGCTGCCGCTGGAGCAGTTCGTACTTGCCAACG
TGAAGCACAAGCACCGCCGCCGCGCCATCGCGCAGCAGCTGAAGAGCAAC
GCGCAGCTGGAGGATTGCTGGCAGCTGCAGCTGGATCTGGGCCGCCAGTA
G

protein sequence of Ggra2364.t1

>Ggra2364.t1 ID=Ggra2364.t1|Name=Ggra2364.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=317bp
MTARGAAARCKSIGWVGSAFAYLACILRLTATCAGVLRGGGVRAALLPLL
RLARGLRLVLERLSNDDVLKGESMCPGEDVVQRALRYPYERPAGSFTFVN
GSCVPFERETTSLSRLHVVLAIGSNAAPEQLLRKYGKSAQPMHVVAVQVH
GMDVVYGALMAPYGSIPATVASSDANSACSIHASLLTDEHLQQMHQTESG
YYFCKLLPNKGVRVLMEGRPLSQPVFAYVARNGPFCVNGRPVALAEIRAE
GRALEQLTQTQMMHAVRQHVGDALPLEQFVLANVKHKHRRRAIAQQLKSN
AQLEDCWQLQLDLGRQ*

mRNA from alignment at tig00000005_pilon:39546..40496+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2364.t1 ID=Ggra2364.t1|Name=Ggra2364.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000005_pilon:39546..40496+ (Gracilaria gracilis GNS1m male)
ATGACAGCGCGCGGCGCGGCGGCGCGCTGCAAATCGATTGGATGGGTTGG
CTCGGCGTTTGCATATCTCGCGTGTATCTTGCGGTTGACCGCCACGTGTG
CTGGTGTGCTACGTGGCGGTGGTGTTCGCGCTGCGCTGCTCCCGTTGTTG
CGGCTTGCTCGCGGCTTGCGCTTGGTGTTGGAAAGACTTTCGAACGACGA
CGTGCTCAAAGGTGAAAGCATGTGCCCGGGCGAGGATGTGGTGCAGCGCG
CGCTGCGATACCCGTACGAACGACCGGCGGGAAGCTTCACGTTTGTGAAT
GGCAGCTGCGTGCCGTTTGAGCGGGAGACGACCAGCTTGTCGCGGCTGCA
CGTGGTGCTGGCCATCGGCTCCAACGCCGCGCCGGAGCAGCTGCTGCGCA
AGTACGGCAAGAGCGCGCAGCCGATGCACGTGGTGGCGGTGCAAGTGCAC
GGCATGGACGTGGTGTACGGCGCGCTGATGGCGCCGTACGGCAGCATTCC
CGCCACGGTGGCCAGCAGCGACGCCAACAGCGCGTGCAGCATCCACGCGT
CGTTGCTCACGGACGAGCACTTGCAGCAGATGCACCAAACCGAGAGCGGC
TATTACTTTTGCAAACTGCTGCCCAACAAGGGCGTGCGCGTGCTGATGGA
AGGGCGCCCGCTGTCGCAGCCGGTGTTTGCGTACGTGGCGCGTAACGGCC
CGTTTTGCGTGAACGGCAGACCGGTGGCGCTTGCGGAGATCCGCGCGGAA
GGACGCGCGTTGGAACAACTCACGCAGACGCAGATGATGCACGCCGTGCG
TCAGCACGTGGGCGACGCGCTGCCGCTGGAGCAGTTCGTACTTGCCAACG
TGAAGCACAAGCACCGCCGCCGCGCCATCGCGCAGCAGCTGAAGAGCAAC
GCGCAGCTGGAGGATTGCTGGCAGCTGCAGCTGGATCTGGGCCGCCAGTA
G

Coding sequence (CDS) from alignment at tig00000005_pilon:39546..40496+

>Ggra2364.t1 ID=Ggra2364.t1|Name=Ggra2364.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000005_pilon:39546..40496+ (Gracilaria gracilis GNS1m male)
ATGACAGCGCGCGGCGCGGCGGCGCGCTGCAAATCGATTGGATGGGTTGG
CTCGGCGTTTGCATATCTCGCGTGTATCTTGCGGTTGACCGCCACGTGTG
CTGGTGTGCTACGTGGCGGTGGTGTTCGCGCTGCGCTGCTCCCGTTGTTG
CGGCTTGCTCGCGGCTTGCGCTTGGTGTTGGAAAGACTTTCGAACGACGA
CGTGCTCAAAGGTGAAAGCATGTGCCCGGGCGAGGATGTGGTGCAGCGCG
CGCTGCGATACCCGTACGAACGACCGGCGGGAAGCTTCACGTTTGTGAAT
GGCAGCTGCGTGCCGTTTGAGCGGGAGACGACCAGCTTGTCGCGGCTGCA
CGTGGTGCTGGCCATCGGCTCCAACGCCGCGCCGGAGCAGCTGCTGCGCA
AGTACGGCAAGAGCGCGCAGCCGATGCACGTGGTGGCGGTGCAAGTGCAC
GGCATGGACGTGGTGTACGGCGCGCTGATGGCGCCGTACGGCAGCATTCC
CGCCACGGTGGCCAGCAGCGACGCCAACAGCGCGTGCAGCATCCACGCGT
CGTTGCTCACGGACGAGCACTTGCAGCAGATGCACCAAACCGAGAGCGGC
TATTACTTTTGCAAACTGCTGCCCAACAAGGGCGTGCGCGTGCTGATGGA
AGGGCGCCCGCTGTCGCAGCCGGTGTTTGCGTACGTGGCGCGTAACGGCC
CGTTTTGCGTGAACGGCAGACCGGTGGCGCTTGCGGAGATCCGCGCGGAA
GGACGCGCGTTGGAACAACTCACGCAGACGCAGATGATGCACGCCGTGCG
TCAGCACGTGGGCGACGCGCTGCCGCTGGAGCAGTTCGTACTTGCCAACG
TGAAGCACAAGCACCGCCGCCGCGCCATCGCGCAGCAGCTGAAGAGCAAC
GCGCAGCTGGAGGATTGCTGGCAGCTGCAGCTGGATCTGGGCCGCCAGTA
G