Ggra2358.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2358.t1
Unique NameGgra2358.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:29082..29573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2358Ggra2358Gracilaria gracilis GNS1m malegenetig00000005_pilon 29082..29573 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2358.t1.stop1Ggra2358.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 29082..29084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2358.t1.CDS1Ggra2358.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 29082..29573 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2358.t1.exon1Ggra2358.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 29082..29573 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2358.t1.start1Ggra2358.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 29571..29573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2358.t1Ggra2358.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 29082..29573 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2358.t1 ID=Ggra2358.t1|Name=Ggra2358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=164bp
MNPTNSKNSPTSFPPPPEEEHTQQSNSPHHSNSELQRDQSISGHDESWDE
TPPLLCMHGCQPPCEATGPRAYECFSNCIRKHVLEVSAQRLTAEEEGLAK
ISMELDKILRKEREGSEAVQNRLNQAFEVLRRARGKIARLNTSEDGIPKR
FEERDIPRNLRGD*
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spliced messenger RNA

>Ggra2358.t1 ID=Ggra2358.t1|Name=Ggra2358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000005_pilon:29082..29573- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCCTACTAACTCGAAGAACTCCCCCACATCCTTTCCGCCACCGCC
TGAGGAGGAACACACGCAGCAATCAAACAGTCCGCACCACTCCAACAGTG
AACTACAAAGAGACCAAAGCATTTCTGGTCATGACGAAAGTTGGGACGAG
ACACCACCACTCTTGTGTATGCACGGTTGTCAGCCACCATGCGAAGCCAC
CGGCCCCCGTGCGTATGAGTGCTTCTCAAACTGTATCCGAAAGCACGTGC
TGGAGGTTAGCGCTCAACGTTTGACCGCCGAAGAAGAAGGTCTTGCGAAG
ATTAGCATGGAGCTAGACAAGATTTTGAGAAAGGAAAGGGAGGGCTCTGA
AGCTGTTCAGAATCGCTTGAACCAAGCTTTTGAAGTACTTCGCAGGGCGC
GGGGAAAGATAGCGCGCCTAAATACTTCTGAAGACGGCATTCCTAAGCGT
TTCGAGGAACGGGATATCCCAAGGAATCTTAGGGGAGACTAA
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protein sequence of Ggra2358.t1

>Ggra2358.t1 ID=Ggra2358.t1|Name=Ggra2358.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=164bp
MNPTNSKNSPTSFPPPPEEEHTQQSNSPHHSNSELQRDQSISGHDESWDE
TPPLLCMHGCQPPCEATGPRAYECFSNCIRKHVLEVSAQRLTAEEEGLAK
ISMELDKILRKEREGSEAVQNRLNQAFEVLRRARGKIARLNTSEDGIPKR
FEERDIPRNLRGD*
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mRNA from alignment at tig00000005_pilon:29082..29573-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2358.t1 ID=Ggra2358.t1|Name=Ggra2358.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00000005_pilon:29082..29573- (Gracilaria gracilis GNS1m male)
ATGAATCCTACTAACTCGAAGAACTCCCCCACATCCTTTCCGCCACCGCC
TGAGGAGGAACACACGCAGCAATCAAACAGTCCGCACCACTCCAACAGTG
AACTACAAAGAGACCAAAGCATTTCTGGTCATGACGAAAGTTGGGACGAG
ACACCACCACTCTTGTGTATGCACGGTTGTCAGCCACCATGCGAAGCCAC
CGGCCCCCGTGCGTATGAGTGCTTCTCAAACTGTATCCGAAAGCACGTGC
TGGAGGTTAGCGCTCAACGTTTGACCGCCGAAGAAGAAGGTCTTGCGAAG
ATTAGCATGGAGCTAGACAAGATTTTGAGAAAGGAAAGGGAGGGCTCTGA
AGCTGTTCAGAATCGCTTGAACCAAGCTTTTGAAGTACTTCGCAGGGCGC
GGGGAAAGATAGCGCGCCTAAATACTTCTGAAGACGGCATTCCTAAGCGT
TTCGAGGAACGGGATATCCCAAGGAATCTTAGGGGAGACTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:29082..29573-

>Ggra2358.t1 ID=Ggra2358.t1|Name=Ggra2358.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00000005_pilon:29082..29573- (Gracilaria gracilis GNS1m male)
ATGAATCCTACTAACTCGAAGAACTCCCCCACATCCTTTCCGCCACCGCC
TGAGGAGGAACACACGCAGCAATCAAACAGTCCGCACCACTCCAACAGTG
AACTACAAAGAGACCAAAGCATTTCTGGTCATGACGAAAGTTGGGACGAG
ACACCACCACTCTTGTGTATGCACGGTTGTCAGCCACCATGCGAAGCCAC
CGGCCCCCGTGCGTATGAGTGCTTCTCAAACTGTATCCGAAAGCACGTGC
TGGAGGTTAGCGCTCAACGTTTGACCGCCGAAGAAGAAGGTCTTGCGAAG
ATTAGCATGGAGCTAGACAAGATTTTGAGAAAGGAAAGGGAGGGCTCTGA
AGCTGTTCAGAATCGCTTGAACCAAGCTTTTGAAGTACTTCGCAGGGCGC
GGGGAAAGATAGCGCGCCTAAATACTTCTGAAGACGGCATTCCTAAGCGT
TTCGAGGAACGGGATATCCCAAGGAATCTTAGGGGAGACTAA
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