Ggra2355.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2355.t1
Unique NameGgra2355.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length390
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:22424..23593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008868299.1
Preferred nameDHODH
PFAMsDHO_dh
Max annot lvl2759|Eukaryota
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
GOsGO:0000003,GO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0004152,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006220,GO:0006221,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0007275,GO:0007565,GO:0007584,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009117,GO:0009163,GO:0009165,GO:0009218,GO:0009220,GO:0009259,GO:0009260,GO:0009410,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010821,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019856,GO:0019866,GO:0022414,GO:0022603,GO:0030879,GO:0031000,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0033043,GO:0034404,GO:0034641,GO:0034654,GO:0036094,GO:0036270,GO:0036477,GO:0042221,GO:0042493,GO:0042594,GO:0042981,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046112,GO:0046134,GO:0046390,GO:0046483,GO:0046903,GO:0048037,GO:0048038,GO:0048039,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050878,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051704,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090140,GO:0090407,GO:0097159,GO:0097367,GO:0097458,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1903576
Evalue1.8e-124
EggNOG OGsCOG0167@1|root,KOG1436@2759|Eukaryota
EC1.3.5.2
Descriptiondihydroorotate dehydrogenase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2355Ggra2355Gracilaria gracilis GNS1m malegenetig00000005_pilon 22424..23593 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2355.t1.stop1Ggra2355.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 22424..22426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2355.t1.CDS1Ggra2355.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 22424..23593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2355.t1.exon1Ggra2355.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 22424..23593 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2355.t1.start1Ggra2355.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 23591..23593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2355.t1Ggra2355.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 22424..23593 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2355.t1 ID=Ggra2355.t1|Name=Ggra2355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=390bp
MSLRLLARTAAASAAALYAYAASADVYQGPLGRYLTSLEPERAHRLAVLL
AKWHLAAPHLPFVPRPLDSPRLRSQVWGLPFANPLGLAAGFDKHAEAMVG
LFDVGFGFIEIGSVTPRAQDGNPRPRVFRLREDRAVINRYGFNSVGMDTV
HQRLLKYDSGGRYQHLTGPLGVNIGKNRDTAAEDAVEDYLKVLLRLGDLA
EYVVVNVSSPNTPGLRSLQAADELRALLSPLLLARDQLVYRPPLLVKIAP
DLSDEQLRDICYVVEQLGVEGLIISNTTLSREGLKSKSPHAQEKGGLSGR
PLRDMSTEIVRKAYKYTEGRVPIIGVGGIECGQDAYDKIRAGACLVQLYT
ALIYQGPRLVQRIKDELDELLKRDGFESVADAVGADHRS*
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spliced messenger RNA

>Ggra2355.t1 ID=Ggra2355.t1|Name=Ggra2355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000005_pilon:22424..23593- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTGCGACTGCTCGCGCGCACGGCCGCCGCGTCTGCCGCCGCGCT
GTACGCGTACGCCGCCTCCGCCGACGTGTATCAGGGGCCGCTGGGGCGCT
ACCTCACGTCGCTCGAGCCGGAGCGCGCGCACCGGCTGGCTGTGCTGCTG
GCCAAATGGCATCTCGCCGCGCCGCACCTGCCGTTCGTGCCGCGCCCGCT
CGACTCGCCGCGCCTGCGATCGCAGGTGTGGGGCTTGCCGTTCGCTAACC
CGCTTGGCTTGGCTGCTGGCTTCGACAAGCACGCTGAGGCTATGGTCGGC
TTGTTTGATGTCGGTTTCGGCTTCATCGAGATTGGTTCCGTCACGCCGCG
CGCGCAGGACGGTAACCCGCGCCCGAGGGTCTTTCGACTGCGCGAGGATC
GCGCAGTCATTAATCGTTACGGCTTCAACAGTGTCGGTATGGATACCGTG
CACCAGCGATTGCTCAAGTATGATTCGGGCGGCCGATATCAACACCTCAC
GGGGCCTCTTGGCGTCAACATTGGTAAGAACCGTGATACTGCCGCCGAGG
ATGCTGTGGAGGATTACTTGAAGGTTTTGCTGCGCTTGGGAGATTTAGCT
GAGTATGTTGTAGTCAATGTGTCCAGTCCGAACACCCCGGGCTTGCGATC
TCTTCAGGCTGCCGATGAACTGCGTGCCTTGCTGTCGCCATTGTTGCTGG
CTCGAGATCAGCTCGTCTATCGCCCTCCCTTGCTTGTGAAGATCGCACCG
GACTTGAGCGATGAGCAGTTGCGAGATATTTGTTACGTCGTTGAACAGCT
TGGCGTTGAAGGCTTGATCATTTCGAACACCACTTTGTCTAGAGAGGGCC
TCAAGTCCAAGTCTCCACACGCTCAAGAGAAGGGTGGGCTAAGCGGTCGC
CCCTTGCGTGATATGAGCACCGAGATTGTTAGGAAGGCCTACAAATACAC
TGAAGGCCGCGTTCCGATCATTGGAGTTGGCGGCATTGAATGCGGTCAGG
ACGCTTATGATAAGATTCGTGCAGGAGCTTGTTTGGTGCAGCTGTACACT
GCGTTAATATATCAAGGTCCACGACTCGTTCAGAGGATCAAGGATGAATT
AGATGAACTCTTGAAGAGAGATGGCTTTGAGTCCGTTGCTGATGCCGTTG
GTGCCGACCATCGGTCGTAG
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protein sequence of Ggra2355.t1

>Ggra2355.t1 ID=Ggra2355.t1|Name=Ggra2355.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=390bp
MSLRLLARTAAASAAALYAYAASADVYQGPLGRYLTSLEPERAHRLAVLL
AKWHLAAPHLPFVPRPLDSPRLRSQVWGLPFANPLGLAAGFDKHAEAMVG
LFDVGFGFIEIGSVTPRAQDGNPRPRVFRLREDRAVINRYGFNSVGMDTV
HQRLLKYDSGGRYQHLTGPLGVNIGKNRDTAAEDAVEDYLKVLLRLGDLA
EYVVVNVSSPNTPGLRSLQAADELRALLSPLLLARDQLVYRPPLLVKIAP
DLSDEQLRDICYVVEQLGVEGLIISNTTLSREGLKSKSPHAQEKGGLSGR
PLRDMSTEIVRKAYKYTEGRVPIIGVGGIECGQDAYDKIRAGACLVQLYT
ALIYQGPRLVQRIKDELDELLKRDGFESVADAVGADHRS*
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mRNA from alignment at tig00000005_pilon:22424..23593-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2355.t1 ID=Ggra2355.t1|Name=Ggra2355.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000005_pilon:22424..23593- (Gracilaria gracilis GNS1m male)
ATGTCGTTGCGACTGCTCGCGCGCACGGCCGCCGCGTCTGCCGCCGCGCT
GTACGCGTACGCCGCCTCCGCCGACGTGTATCAGGGGCCGCTGGGGCGCT
ACCTCACGTCGCTCGAGCCGGAGCGCGCGCACCGGCTGGCTGTGCTGCTG
GCCAAATGGCATCTCGCCGCGCCGCACCTGCCGTTCGTGCCGCGCCCGCT
CGACTCGCCGCGCCTGCGATCGCAGGTGTGGGGCTTGCCGTTCGCTAACC
CGCTTGGCTTGGCTGCTGGCTTCGACAAGCACGCTGAGGCTATGGTCGGC
TTGTTTGATGTCGGTTTCGGCTTCATCGAGATTGGTTCCGTCACGCCGCG
CGCGCAGGACGGTAACCCGCGCCCGAGGGTCTTTCGACTGCGCGAGGATC
GCGCAGTCATTAATCGTTACGGCTTCAACAGTGTCGGTATGGATACCGTG
CACCAGCGATTGCTCAAGTATGATTCGGGCGGCCGATATCAACACCTCAC
GGGGCCTCTTGGCGTCAACATTGGTAAGAACCGTGATACTGCCGCCGAGG
ATGCTGTGGAGGATTACTTGAAGGTTTTGCTGCGCTTGGGAGATTTAGCT
GAGTATGTTGTAGTCAATGTGTCCAGTCCGAACACCCCGGGCTTGCGATC
TCTTCAGGCTGCCGATGAACTGCGTGCCTTGCTGTCGCCATTGTTGCTGG
CTCGAGATCAGCTCGTCTATCGCCCTCCCTTGCTTGTGAAGATCGCACCG
GACTTGAGCGATGAGCAGTTGCGAGATATTTGTTACGTCGTTGAACAGCT
TGGCGTTGAAGGCTTGATCATTTCGAACACCACTTTGTCTAGAGAGGGCC
TCAAGTCCAAGTCTCCACACGCTCAAGAGAAGGGTGGGCTAAGCGGTCGC
CCCTTGCGTGATATGAGCACCGAGATTGTTAGGAAGGCCTACAAATACAC
TGAAGGCCGCGTTCCGATCATTGGAGTTGGCGGCATTGAATGCGGTCAGG
ACGCTTATGATAAGATTCGTGCAGGAGCTTGTTTGGTGCAGCTGTACACT
GCGTTAATATATCAAGGTCCACGACTCGTTCAGAGGATCAAGGATGAATT
AGATGAACTCTTGAAGAGAGATGGCTTTGAGTCCGTTGCTGATGCCGTTG
GTGCCGACCATCGGTCGTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:22424..23593-

>Ggra2355.t1 ID=Ggra2355.t1|Name=Ggra2355.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1170bp|location=Sequence derived from alignment at tig00000005_pilon:22424..23593- (Gracilaria gracilis GNS1m male)
ATGTCGTTGCGACTGCTCGCGCGCACGGCCGCCGCGTCTGCCGCCGCGCT
GTACGCGTACGCCGCCTCCGCCGACGTGTATCAGGGGCCGCTGGGGCGCT
ACCTCACGTCGCTCGAGCCGGAGCGCGCGCACCGGCTGGCTGTGCTGCTG
GCCAAATGGCATCTCGCCGCGCCGCACCTGCCGTTCGTGCCGCGCCCGCT
CGACTCGCCGCGCCTGCGATCGCAGGTGTGGGGCTTGCCGTTCGCTAACC
CGCTTGGCTTGGCTGCTGGCTTCGACAAGCACGCTGAGGCTATGGTCGGC
TTGTTTGATGTCGGTTTCGGCTTCATCGAGATTGGTTCCGTCACGCCGCG
CGCGCAGGACGGTAACCCGCGCCCGAGGGTCTTTCGACTGCGCGAGGATC
GCGCAGTCATTAATCGTTACGGCTTCAACAGTGTCGGTATGGATACCGTG
CACCAGCGATTGCTCAAGTATGATTCGGGCGGCCGATATCAACACCTCAC
GGGGCCTCTTGGCGTCAACATTGGTAAGAACCGTGATACTGCCGCCGAGG
ATGCTGTGGAGGATTACTTGAAGGTTTTGCTGCGCTTGGGAGATTTAGCT
GAGTATGTTGTAGTCAATGTGTCCAGTCCGAACACCCCGGGCTTGCGATC
TCTTCAGGCTGCCGATGAACTGCGTGCCTTGCTGTCGCCATTGTTGCTGG
CTCGAGATCAGCTCGTCTATCGCCCTCCCTTGCTTGTGAAGATCGCACCG
GACTTGAGCGATGAGCAGTTGCGAGATATTTGTTACGTCGTTGAACAGCT
TGGCGTTGAAGGCTTGATCATTTCGAACACCACTTTGTCTAGAGAGGGCC
TCAAGTCCAAGTCTCCACACGCTCAAGAGAAGGGTGGGCTAAGCGGTCGC
CCCTTGCGTGATATGAGCACCGAGATTGTTAGGAAGGCCTACAAATACAC
TGAAGGCCGCGTTCCGATCATTGGAGTTGGCGGCATTGAATGCGGTCAGG
ACGCTTATGATAAGATTCGTGCAGGAGCTTGTTTGGTGCAGCTGTACACT
GCGTTAATATATCAAGGTCCACGACTCGTTCAGAGGATCAAGGATGAATT
AGATGAACTCTTGAAGAGAGATGGCTTTGAGTCCGTTGCTGATGCCGTTG
GTGCCGACCATCGGTCGTAG
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