Ggra2354.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2354.t1
Unique NameGgra2354.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:17918..19329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.33e-88
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2354Ggra2354Gracilaria gracilis GNS1m malegenetig00000005_pilon 17918..19329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2354.t1Ggra2354.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 17918..19329 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2354.t1.start1Ggra2354.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 17918..17920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2354.t1.CDS1Ggra2354.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 17918..18052 +
Ggra2354.t1.CDS2Ggra2354.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 18146..19037 +
Ggra2354.t1.CDS3Ggra2354.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000005_pilon 19130..19238 +
Ggra2354.t1.CDS4Ggra2354.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000005_pilon 19323..19329 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2354.t1.exon1Ggra2354.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 17918..18052 +
Ggra2354.t1.exon2Ggra2354.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 18146..19037 +
Ggra2354.t1.exon3Ggra2354.t1.exon3Gracilaria gracilis GNS1m maleexontig00000005_pilon 19130..19238 +
Ggra2354.t1.exon4Ggra2354.t1.exon4Gracilaria gracilis GNS1m maleexontig00000005_pilon 19323..19329 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2354.t1.intron1Ggra2354.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 18053..18145 +
Ggra2354.t1.intron2Ggra2354.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000005_pilon 19038..19129 +
Ggra2354.t1.intron3Ggra2354.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000005_pilon 19239..19322 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2354.t1.stop1Ggra2354.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 19327..19329 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2354.t1 ID=Ggra2354.t1|Name=Ggra2354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp
MAENFRHGMPEELAGWLCKKQRVFPTKKRRYFKLASQVLSSHVRNNSDPS
WEQNLLGADVVGVEGSRRIVVMCPDRTVRLITDTPNDYYHWLDALQKAAN
RRIEDYYELGQSLGEGAFAKVVMGLDRTTLEKFAVKIIEKQSDDELGQQF
VWRELNVMKNVNHPNIVRTYDIFDTKNRLYIVLEYMPGGTLGEILKKVGR
FTEGQAKIILADILNGVAYLHDKSIVHRDLKLKNILCDTKEMPVRVKLAD
FGLANFVGVRTVSKVALKSQVGSPHYVAPEVLREEPYGPVVDTWAVGVIL
HIMLTRRYPFAGETIQETLELVVRGRFSLIGSEWDRISEDAKITERPQAQ
DQPICFVTASGLVTYMLLLQFRFDGNRTIG*
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spliced messenger RNA

>Ggra2354.t1 ID=Ggra2354.t1|Name=Ggra2354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1143bp|location=Sequence derived from alignment at tig00000005_pilon:17918..19329+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGAACTTTCGACACGGCATGCCCGAGGAGCTTGCCGGGTGGCT
GTGCAAGAAGCAGCGCGTGTTTCCCACCAAGAAGCGCCGTTACTTCAAGC
TTGCTAGTCAGGTGCTCTCCAGTCACGTGCGAAACAACTCCGACCCAAGC
TGGGAGCAGAATTTGTTGGGAGCCGATGTCGTTGGTGTCGAAGGCTCCCG
GCGAATCGTCGTCATGTGTCCAGATCGTACAGTCCGTCTCATAACAGACA
CTCCCAATGACTACTATCACTGGCTGGACGCTTTGCAAAAAGCTGCGAAT
CGTCGTATCGAAGACTACTACGAACTCGGACAATCGCTTGGTGAAGGTGC
TTTTGCGAAAGTGGTCATGGGTCTCGATCGAACCACATTGGAGAAGTTCG
CAGTCAAGATCATTGAGAAACAGAGTGATGATGAACTTGGCCAACAGTTT
GTATGGCGTGAGCTAAATGTCATGAAGAACGTTAATCATCCGAACATTGT
TCGCACCTACGATATCTTCGACACAAAGAATCGCTTGTATATTGTATTAG
AGTACATGCCTGGAGGAACACTAGGAGAAATCCTCAAGAAGGTTGGCCGC
TTCACAGAAGGTCAGGCAAAGATCATTCTGGCTGATATACTCAACGGAGT
AGCGTACCTTCACGACAAGTCAATCGTTCACCGAGACCTCAAGCTTAAGA
ACATCTTGTGTGATACGAAGGAAATGCCCGTTCGCGTTAAGTTGGCCGAT
TTCGGACTCGCAAACTTTGTCGGAGTGCGTACCGTTTCGAAGGTCGCGCT
TAAGAGTCAAGTCGGCTCCCCACACTACGTGGCGCCTGAGGTTTTGCGCG
AGGAGCCCTACGGACCTGTTGTCGACACCTGGGCGGTTGGTGTTATTCTT
CACATTATGCTAACAAGACGATATCCGTTCGCTGGGGAAACTATTCAAGA
AACGCTAGAACTGGTTGTACGAGGTCGCTTTTCGCTCATCGGGTCGGAAT
GGGATCGTATTTCGGAAGACGCTAAGATTACTGAACGACCACAAGCTCAA
GACCAACCCATCTGCTTTGTGACTGCTAGTGGGCTTGTGACGTACATGCT
TTTGCTGCAATTTAGGTTCGACGGGAATAGGACAATTGGTTAA
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protein sequence of Ggra2354.t1

>Ggra2354.t1 ID=Ggra2354.t1|Name=Ggra2354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=381bp
MAENFRHGMPEELAGWLCKKQRVFPTKKRRYFKLASQVLSSHVRNNSDPS
WEQNLLGADVVGVEGSRRIVVMCPDRTVRLITDTPNDYYHWLDALQKAAN
RRIEDYYELGQSLGEGAFAKVVMGLDRTTLEKFAVKIIEKQSDDELGQQF
VWRELNVMKNVNHPNIVRTYDIFDTKNRLYIVLEYMPGGTLGEILKKVGR
FTEGQAKIILADILNGVAYLHDKSIVHRDLKLKNILCDTKEMPVRVKLAD
FGLANFVGVRTVSKVALKSQVGSPHYVAPEVLREEPYGPVVDTWAVGVIL
HIMLTRRYPFAGETIQETLELVVRGRFSLIGSEWDRISEDAKITERPQAQ
DQPICFVTASGLVTYMLLLQFRFDGNRTIG*
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mRNA from alignment at tig00000005_pilon:17918..19329+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2354.t1 ID=Ggra2354.t1|Name=Ggra2354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1412bp|location=Sequence derived from alignment at tig00000005_pilon:17918..19329+ (Gracilaria gracilis GNS1m male)
ATGGCAGAGAACTTTCGACACGGCATGCCCGAGGAGCTTGCCGGGTGGCT
GTGCAAGAAGCAGCGCGTGTTTCCCACCAAGAAGCGCCGTTACTTCAAGC
TTGCTAGTCAGGTGCTCTCCAGTCACGTGCGAAACGTAAGTATTCTTGTC
CAAGCTTTCCCTCCCACGCTATGCGCACCCCCATTTGCTAACTCTGAAGC
CGGCAAAACGTTCGTCATTTCTTTACAGAACTCCGACCCAAGCTGGGAGC
AGAATTTGTTGGGAGCCGATGTCGTTGGTGTCGAAGGCTCCCGGCGAATC
GTCGTCATGTGTCCAGATCGTACAGTCCGTCTCATAACAGACACTCCCAA
TGACTACTATCACTGGCTGGACGCTTTGCAAAAAGCTGCGAATCGTCGTA
TCGAAGACTACTACGAACTCGGACAATCGCTTGGTGAAGGTGCTTTTGCG
AAAGTGGTCATGGGTCTCGATCGAACCACATTGGAGAAGTTCGCAGTCAA
GATCATTGAGAAACAGAGTGATGATGAACTTGGCCAACAGTTTGTATGGC
GTGAGCTAAATGTCATGAAGAACGTTAATCATCCGAACATTGTTCGCACC
TACGATATCTTCGACACAAAGAATCGCTTGTATATTGTATTAGAGTACAT
GCCTGGAGGAACACTAGGAGAAATCCTCAAGAAGGTTGGCCGCTTCACAG
AAGGTCAGGCAAAGATCATTCTGGCTGATATACTCAACGGAGTAGCGTAC
CTTCACGACAAGTCAATCGTTCACCGAGACCTCAAGCTTAAGAACATCTT
GTGTGATACGAAGGAAATGCCCGTTCGCGTTAAGTTGGCCGATTTCGGAC
TCGCAAACTTTGTCGGAGTGCGTACCGTTTCGAAGGTCGCGCTTAAGAGT
CAAGTCGGCTCCCCACACTACGTGGCGCCTGAGGTTTTGCGCGAGGAGCC
CTACGGACCTGTTGTCGACACCTGGGCGGTTGGTGTTATTCTTCACATTA
TGCTAACAAGACGATATCCGTTCGCTGGGGAAACTATTCAAGAAACGCTA
GAACTGGTTGTACGAGGTCGCTTTTCGCTCATCGGGTCGGAATGGGATCG
TATTTCGGAAGACGCTAAGAGTTTGCTACAGGGGCTGCTTAACGAAGATC
CACAGGAACGACTTACAGCGAGAGACGCACTAGCACATCCTTGGTTTTCC
GATCTCAAGCAGTTACTGAACGACCACAAGCTCAAGACCAACCCATCTGC
TTTGTGACTGCTAGTGGGCTTGTGACGTACATGCTTTTGCTGCAATTTAG
GTTCGACGGGAATAGGACAATGTTTGTTCATATGTTTTGCCGTTCTCGTG
ATATATATTCTATGCTCCTAACACCTCGTTTTTTATGCTCATTGAAATAT
CCAAGTGGTTAA
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Coding sequence (CDS) from alignment at tig00000005_pilon:17918..19329+

>Ggra2354.t1 ID=Ggra2354.t1|Name=Ggra2354.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1143bp|location=Sequence derived from alignment at tig00000005_pilon:17918..19329+ (Gracilaria gracilis GNS1m male)
ATGGCAGAGAACTTTCGACACGGCATGCCCGAGGAGCTTGCCGGGTGGCT
GTGCAAGAAGCAGCGCGTGTTTCCCACCAAGAAGCGCCGTTACTTCAAGC
TTGCTAGTCAGGTGCTCTCCAGTCACGTGCGAAACAACTCCGACCCAAGC
TGGGAGCAGAATTTGTTGGGAGCCGATGTCGTTGGTGTCGAAGGCTCCCG
GCGAATCGTCGTCATGTGTCCAGATCGTACAGTCCGTCTCATAACAGACA
CTCCCAATGACTACTATCACTGGCTGGACGCTTTGCAAAAAGCTGCGAAT
CGTCGTATCGAAGACTACTACGAACTCGGACAATCGCTTGGTGAAGGTGC
TTTTGCGAAAGTGGTCATGGGTCTCGATCGAACCACATTGGAGAAGTTCG
CAGTCAAGATCATTGAGAAACAGAGTGATGATGAACTTGGCCAACAGTTT
GTATGGCGTGAGCTAAATGTCATGAAGAACGTTAATCATCCGAACATTGT
TCGCACCTACGATATCTTCGACACAAAGAATCGCTTGTATATTGTATTAG
AGTACATGCCTGGAGGAACACTAGGAGAAATCCTCAAGAAGGTTGGCCGC
TTCACAGAAGGTCAGGCAAAGATCATTCTGGCTGATATACTCAACGGAGT
AGCGTACCTTCACGACAAGTCAATCGTTCACCGAGACCTCAAGCTTAAGA
ACATCTTGTGTGATACGAAGGAAATGCCCGTTCGCGTTAAGTTGGCCGAT
TTCGGACTCGCAAACTTTGTCGGAGTGCGTACCGTTTCGAAGGTCGCGCT
TAAGAGTCAAGTCGGCTCCCCACACTACGTGGCGCCTGAGGTTTTGCGCG
AGGAGCCCTACGGACCTGTTGTCGACACCTGGGCGGTTGGTGTTATTCTT
CACATTATGCTAACAAGACGATATCCGTTCGCTGGGGAAACTATTCAAGA
AACGCTAGAACTGGTTGTACGAGGTCGCTTTTCGCTCATCGGGTCGGAAT
GGGATCGTATTTCGGAAGACGCTAAGATTACTGAACGACCACAAGCTCAA
GACCAACCCATCTGCTTTGTGACTGCTAGTGGGCTTGTGACGTACATGCT
TTTGCTGCAATTTAGGTTCGACGGGAATAGGACAATTGGTTAA
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