Ggra2350.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2350.t1
Unique NameGgra2350.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:414415..415638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002955511.1
PFAMsMito_carr
Max annot lvl3041|Chlorophyta
KEGG koko:K13577,ko:K15103
KEGG TC2.A.29.2.2,2.A.29.2.3,2.A.29.2.7,2.A.29.3.3,2.A.29.3.4,2.A.29.3.5
KEGG Pathwayko04964,map04964
Evalue1.19e-41
EggNOG OGsKOG0759@1|root,KOG0753@2759|Eukaryota,37IF7@33090|Viridiplantae,34K55@3041|Chlorophyta
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
COG categoryC
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2350Ggra2350Gracilaria gracilis GNS1m malegenetig00000122_pilon 414415..415638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2350.t1Ggra2350.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 414415..415638 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2350.t1.stop1Ggra2350.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 414415..414417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2350.t1.CDS1Ggra2350.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 414415..414721 -
Ggra2350.t1.CDS2Ggra2350.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000122_pilon 414866..414881 -
Ggra2350.t1.CDS3Ggra2350.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000122_pilon 414954..415064 -
Ggra2350.t1.CDS4Ggra2350.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000122_pilon 415134..415433 -
Ggra2350.t1.CDS5Ggra2350.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000122_pilon 415497..415638 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2350.t1.exon1Ggra2350.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 414415..414721 -
Ggra2350.t1.exon2Ggra2350.t1.exon2Gracilaria gracilis GNS1m maleexontig00000122_pilon 414866..414881 -
Ggra2350.t1.exon3Ggra2350.t1.exon3Gracilaria gracilis GNS1m maleexontig00000122_pilon 414954..415064 -
Ggra2350.t1.exon4Ggra2350.t1.exon4Gracilaria gracilis GNS1m maleexontig00000122_pilon 415134..415433 -
Ggra2350.t1.exon5Ggra2350.t1.exon5Gracilaria gracilis GNS1m maleexontig00000122_pilon 415497..415638 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2350.t1.intron1Ggra2350.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000122_pilon 414722..414865 -
Ggra2350.t1.intron2Ggra2350.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000122_pilon 414882..414953 -
Ggra2350.t1.intron3Ggra2350.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000122_pilon 415065..415133 -
Ggra2350.t1.intron4Ggra2350.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000122_pilon 415434..415496 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2350.t1.start1Ggra2350.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 415636..415638 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2350.t1 ID=Ggra2350.t1|Name=Ggra2350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MSGKDRAPTVVNEDFRVAKHQRSVPPSEHKKHPLYQQLALGGFSCAVATT
FTHPIDTVKLRIQLQGLLSGTEYRYNGLLSGLHRVSQDEGLFALFNGLSP
AILRASTSGASRLGLYEPLRTFFTKIMGHEQPTFVTKVTAAVSSGAIGAF
VGNPCELIKVRMQQADTYQYKHVGDGIVRVIKEEATYDHCKTHLKRYTGL
EEALPAHFGAAMTAGLVTTSVSTPADVVKSVVMHSKLRMHPVECARLILR
KEGFRGFLRGWTANYARLGPHTLITVLTYENLRTAFGWNNL*
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spliced messenger RNA

>Ggra2350.t1 ID=Ggra2350.t1|Name=Ggra2350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000122_pilon:414415..415638- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTAAGGATAGGGCACCAACGGTAGTGAACGAAGATTTTCGGGT
TGCGAAGCACCAGCGATCTGTTCCTCCATCGGAGCACAAGAAGCATCCGT
TGTATCAACAATTAGCACTGGGAGGCTTTTCTTGCGCAGTTGCTACCACT
TTCACACACCCGATCGATACCGTAAAACTTCGCATTCAGCTTCAGGGATT
ACTCTCTGGCACGGAGTACCGATATAACGGACTTCTATCTGGTCTACATC
GAGTTTCGCAGGATGAAGGCTTGTTTGCATTATTTAACGGTCTTTCACCC
GCTATTCTCCGAGCTTCTACGTCAGGTGCGTCGCGATTGGGTTTGTACGA
ACCGCTTAGGACATTTTTCACTAAGATTATGGGACACGAGCAACCGACGT
TTGTCACTAAAGTTACCGCCGCAGTGTCTTCTGGCGCAATTGGCGCATTC
GTAGGTAATCCGTGTGAATTAATCAAAGTTCGAATGCAGCAAGCCGATAC
CTATCAGTACAAGCATGTTGGCGACGGGATTGTTCGGGTTATCAAAGAAG
AAGCGACTTACGATCATTGCAAAACACATTTGAAGCGGTACACAGGTCTC
GAAGAGGCCCTTCCAGCCCATTTTGGGGCAGCTATGACGGCAGGTTTGGT
CACTACTTCGGTATCAACACCGGCTGACGTTGTGAAATCGGTTGTGATGC
ACTCGAAACTGCGTATGCATCCCGTTGAATGCGCTCGCTTAATACTACGG
AAGGAGGGATTCCGAGGCTTTTTGCGAGGCTGGACTGCCAACTATGCCCG
ACTTGGACCGCACACACTAATCACAGTCTTGACTTACGAAAATCTAAGAA
CTGCGTTCGGTTGGAACAATTTGTGA
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protein sequence of Ggra2350.t1

>Ggra2350.t1 ID=Ggra2350.t1|Name=Ggra2350.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MSGKDRAPTVVNEDFRVAKHQRSVPPSEHKKHPLYQQLALGGFSCAVATT
FTHPIDTVKLRIQLQGLLSGTEYRYNGLLSGLHRVSQDEGLFALFNGLSP
AILRASTSGASRLGLYEPLRTFFTKIMGHEQPTFVTKVTAAVSSGAIGAF
VGNPCELIKVRMQQADTYQYKHVGDGIVRVIKEEATYDHCKTHLKRYTGL
EEALPAHFGAAMTAGLVTTSVSTPADVVKSVVMHSKLRMHPVECARLILR
KEGFRGFLRGWTANYARLGPHTLITVLTYENLRTAFGWNNL*
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mRNA from alignment at tig00000122_pilon:414415..415638-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2350.t1 ID=Ggra2350.t1|Name=Ggra2350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000122_pilon:414415..415638- (Gracilaria gracilis GNS1m male)
ATGTCAGGTAAGGATAGGGCACCAACGGTAGTGAACGAAGATTTTCGGGT
TGCGAAGCACCAGCGATCTGTTCCTCCATCGGAGCACAAGAAGCATCCGT
TGTATCAACAATTAGCACTGGGAGGCTTTTCTTGCGCAGTTGGTACGTGA
AAATGGTTCTTTTCCCAATGAATGCTTTACAGTTGCTAATCATTGTCACC
CCCAGCTACCACTTTCACACACCCGATCGATACCGTAAAACTTCGCATTC
AGCTTCAGGGATTACTCTCTGGCACGGAGTACCGATATAACGGACTTCTA
TCTGGTCTACATCGAGTTTCGCAGGATGAAGGCTTGTTTGCATTATTTAA
CGGTCTTTCACCCGCTATTCTCCGAGCTTCTACGTCAGGTGCGTCGCGAT
TGGGTTTGTACGAACCGCTTAGGACATTTTTCACTAAGATTATGGGACAC
GAGCAACCGACGTTTGTCACTAAAGTTACCGCCGCAGTGTCTTCTGGCGC
AATTGGTAGGTGAGAGTTGAGTGCTAACACTATGTTTTGGTATCTAACAT
GTTTTCTCGTTTTGAATGTAACAGGCGCATTCGTAGGTAATCCGTGTGAA
TTAATCAAAGTTCGAATGCAGCAAGCCGATACCTATCAGTACAAGCATGT
TGGCGACGGGATTGTTCGGGTTATCAAAGAAGAAGGTGTGACAGCATTAT
GGAACGGAACCATGCCTGCAGCCTTGCGAGCAGCGTTACTAACTTCATCG
CAACTAGCGACTTACGATCATTGGTACGTGAAGACAAGTGACTGCTTCTT
GAAGCACAACTTAGGGTTTCCACCTGACTAATCTTATGAACGAAGTATCA
TCTAACCGCACTGGACATCGCTCTTTCTCTACAATTTCACCTTTGCCTTC
GAATCCATCCTGCGAAGCAAAACACATTTGAAGCGGTACACAGGTCTCGA
AGAGGCCCTTCCAGCCCATTTTGGGGCAGCTATGACGGCAGGTTTGGTCA
CTACTTCGGTATCAACACCGGCTGACGTTGTGAAATCGGTTGTGATGCAC
TCGAAACTGCGTATGCATCCCGTTGAATGCGCTCGCTTAATACTACGGAA
GGAGGGATTCCGAGGCTTTTTGCGAGGCTGGACTGCCAACTATGCCCGAC
TTGGACCGCACACACTAATCACAGTCTTGACTTACGAAAATCTAAGAACT
GCGTTCGGTTGGAACAATTTGTGA
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Coding sequence (CDS) from alignment at tig00000122_pilon:414415..415638-

>Ggra2350.t1 ID=Ggra2350.t1|Name=Ggra2350.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000122_pilon:414415..415638- (Gracilaria gracilis GNS1m male)
ATGTCAGGTAAGGATAGGGCACCAACGGTAGTGAACGAAGATTTTCGGGT
TGCGAAGCACCAGCGATCTGTTCCTCCATCGGAGCACAAGAAGCATCCGT
TGTATCAACAATTAGCACTGGGAGGCTTTTCTTGCGCAGTTGCTACCACT
TTCACACACCCGATCGATACCGTAAAACTTCGCATTCAGCTTCAGGGATT
ACTCTCTGGCACGGAGTACCGATATAACGGACTTCTATCTGGTCTACATC
GAGTTTCGCAGGATGAAGGCTTGTTTGCATTATTTAACGGTCTTTCACCC
GCTATTCTCCGAGCTTCTACGTCAGGTGCGTCGCGATTGGGTTTGTACGA
ACCGCTTAGGACATTTTTCACTAAGATTATGGGACACGAGCAACCGACGT
TTGTCACTAAAGTTACCGCCGCAGTGTCTTCTGGCGCAATTGGCGCATTC
GTAGGTAATCCGTGTGAATTAATCAAAGTTCGAATGCAGCAAGCCGATAC
CTATCAGTACAAGCATGTTGGCGACGGGATTGTTCGGGTTATCAAAGAAG
AAGCGACTTACGATCATTGCAAAACACATTTGAAGCGGTACACAGGTCTC
GAAGAGGCCCTTCCAGCCCATTTTGGGGCAGCTATGACGGCAGGTTTGGT
CACTACTTCGGTATCAACACCGGCTGACGTTGTGAAATCGGTTGTGATGC
ACTCGAAACTGCGTATGCATCCCGTTGAATGCGCTCGCTTAATACTACGG
AAGGAGGGATTCCGAGGCTTTTTGCGAGGCTGGACTGCCAACTATGCCCG
ACTTGGACCGCACACACTAATCACAGTCTTGACTTACGAAAATCTAAGAA
CTGCGTTCGGTTGGAACAATTTGTGA
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