Ggra2343.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2343.t1
Unique NameGgra2343.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:393085..394649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S162_132V6.1
PFAMsANAPC4_WD40,WD40
Max annot lvl35493|Streptophyta
KEGG koko:K14003
KEGG Pathwayko04141,map04141
GOsGO:0002790,GO:0003400,GO:0003674,GO:0005085,GO:0005090,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005886,GO:0006810,GO:0006888,GO:0008047,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0019899,GO:0030176,GO:0030234,GO:0030695,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0032386,GO:0032879,GO:0032940,GO:0033036,GO:0033043,GO:0042175,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048209,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060341,GO:0060589,GO:0060627,GO:0060628,GO:0065007,GO:0065009,GO:0071702,GO:0071705,GO:0071944,GO:0090113,GO:0098588,GO:0098772,GO:0098805,GO:0098827
Evalue1.7e-17
EggNOG OGsKOG0771@1|root,KOG0771@2759|Eukaryota,37IAV@33090|Viridiplantae,3GB5Y@35493|Streptophyta
DescriptionSec12-like protein 2
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2343Ggra2343Gracilaria gracilis GNS1m malegenetig00000122_pilon 393085..394649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2343.t1Ggra2343.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 393085..394649 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2343.t1.start1Ggra2343.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 393085..393087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2343.t1.CDS1Ggra2343.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 393085..393207 +
Ggra2343.t1.CDS2Ggra2343.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000122_pilon 393288..394649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2343.t1.exon1Ggra2343.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 393085..393207 +
Ggra2343.t1.exon2Ggra2343.t1.exon2Gracilaria gracilis GNS1m maleexontig00000122_pilon 393288..394649 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2343.t1.intron1Ggra2343.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000122_pilon 393208..393287 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2343.t1.stop1Ggra2343.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 394647..394649 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2343.t1 ID=Ggra2343.t1|Name=Ggra2343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp
MEPLTRIVFTFPIYALGCLPGHRLVLAGGGGRMKSGIPNVCQVLTFDEKE
TTLKPTASAELSDAAVALTTHESVIHLVIGPGVKDYNFLDGKLIPVSSFH
HDLQVSTSQEQTAIAASEDASTLVIASDNGNVVVLRLERFEPVFSGQIHA
NGITDLCVKSDGSLVATTGRDKAAHIWRSRDGEILQTLKPIMASSHRTHI
RATRFCSTQSDLLFTAESNPRKGGWIAAWRKPSPSETTLYTPVTSIKASS
DALTAMCVNTEGSLLASSSAEGHVSLFAWNGTAFSKKWSTETRTHPFRPP
KSPHILPVTGMSFSESGKYLFAASADYTVSIWPTKPPIRWSRFGRLVWLL
SVFVLILAILVAEDGQLHEEVRRRRAMVAPYMEPHLSEMQRVLRPLIKES
RQAMQPHLSQLRERTKAYINLVSEQGHPVLEAVGRVYRRLSFENNGDRRS
QESQTLESFEDFLDLSAEVLNRNGNCEHEQEGKKIILHAYKTES*
back to top

spliced messenger RNA

>Ggra2343.t1 ID=Ggra2343.t1|Name=Ggra2343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000122_pilon:393085..394649+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCGCTCACCCGCATTGTGTTCACTTTTCCAATCTATGCTCTCGG
TTGCTTGCCCGGTCATAGACTTGTCCTCGCCGGCGGCGGTGGCCGGATGA
AAAGCGGTATTCCTAATGTTTGCCAAGTCTTGACCTTTGATGAGAAAGAG
ACCACACTCAAACCTACCGCCTCAGCAGAGCTTTCAGATGCTGCCGTAGC
CCTCACAACCCATGAAAGTGTCATCCATCTTGTCATCGGTCCTGGAGTTA
AGGACTACAATTTTCTCGATGGCAAACTGATACCAGTTTCCTCTTTCCAT
CACGATTTGCAGGTATCTACTAGTCAGGAACAAACCGCAATTGCAGCCTC
GGAAGACGCTTCAACCCTCGTAATAGCCTCCGATAATGGCAATGTAGTTG
TGCTGCGGCTGGAACGCTTCGAACCAGTTTTCAGCGGTCAAATCCATGCG
AATGGAATCACCGACCTATGTGTCAAGTCTGATGGGTCGCTGGTTGCTAC
CACGGGTCGCGACAAAGCAGCCCACATCTGGAGAAGTCGGGATGGTGAAA
TCTTGCAGACACTGAAACCGATAATGGCCTCTTCGCACCGTACTCATATT
CGGGCAACCCGCTTCTGTTCTACACAATCTGACCTGTTGTTCACAGCAGA
AAGTAATCCTCGGAAAGGCGGGTGGATCGCAGCCTGGCGCAAGCCTAGTC
CATCTGAGACCACTCTCTATACACCTGTCACATCAATTAAAGCGTCAAGT
GACGCTCTAACTGCAATGTGTGTCAATACAGAGGGCTCACTCTTGGCGAG
CAGCTCTGCTGAGGGGCATGTTTCTCTCTTTGCTTGGAACGGTACCGCAT
TCTCGAAGAAGTGGAGTACGGAGACAAGAACCCACCCATTCCGCCCACCA
AAATCCCCACATATTCTTCCGGTTACAGGGATGAGTTTTTCGGAGTCAGG
AAAGTACCTCTTTGCGGCCTCTGCGGACTACACTGTTTCGATTTGGCCAA
CTAAACCTCCGATCAGATGGAGCAGATTTGGTCGACTCGTATGGTTGCTC
AGCGTGTTCGTGTTGATCCTCGCAATACTTGTCGCAGAAGATGGGCAATT
GCACGAGGAGGTCAGAAGAAGGCGGGCGATGGTTGCTCCGTACATGGAAC
CTCATCTGTCCGAAATGCAGCGAGTTCTGAGGCCACTTATCAAGGAGAGT
CGTCAAGCGATGCAACCGCACTTGTCTCAGTTGCGGGAAAGAACCAAGGC
ATATATCAACCTCGTCTCTGAACAAGGCCACCCAGTTCTCGAGGCCGTCG
GCAGAGTTTACCGCAGGCTTTCCTTTGAAAATAATGGCGACAGACGCTCT
CAGGAGTCCCAAACACTAGAATCTTTCGAAGACTTTCTCGACTTGTCTGC
TGAGGTTCTGAACAGGAACGGGAACTGCGAGCATGAGCAAGAAGGAAAGA
AAATTATACTACATGCATATAAAACAGAAAGTTAA
back to top

protein sequence of Ggra2343.t1

>Ggra2343.t1 ID=Ggra2343.t1|Name=Ggra2343.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=495bp
MEPLTRIVFTFPIYALGCLPGHRLVLAGGGGRMKSGIPNVCQVLTFDEKE
TTLKPTASAELSDAAVALTTHESVIHLVIGPGVKDYNFLDGKLIPVSSFH
HDLQVSTSQEQTAIAASEDASTLVIASDNGNVVVLRLERFEPVFSGQIHA
NGITDLCVKSDGSLVATTGRDKAAHIWRSRDGEILQTLKPIMASSHRTHI
RATRFCSTQSDLLFTAESNPRKGGWIAAWRKPSPSETTLYTPVTSIKASS
DALTAMCVNTEGSLLASSSAEGHVSLFAWNGTAFSKKWSTETRTHPFRPP
KSPHILPVTGMSFSESGKYLFAASADYTVSIWPTKPPIRWSRFGRLVWLL
SVFVLILAILVAEDGQLHEEVRRRRAMVAPYMEPHLSEMQRVLRPLIKES
RQAMQPHLSQLRERTKAYINLVSEQGHPVLEAVGRVYRRLSFENNGDRRS
QESQTLESFEDFLDLSAEVLNRNGNCEHEQEGKKIILHAYKTES*
back to top

mRNA from alignment at tig00000122_pilon:393085..394649+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2343.t1 ID=Ggra2343.t1|Name=Ggra2343.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1565bp|location=Sequence derived from alignment at tig00000122_pilon:393085..394649+ (Gracilaria gracilis GNS1m male)
ATGGAACCGCTCACCCGCATTGTGTTCACTTTTCCAATCTATGCTCTCGG
TTGCTTGCCCGGTCATAGACTTGTCCTCGCCGGCGGCGGTGGCCGGATGA
AAAGCGGTATTCCTAATGTTTGCGTAAGTTGATTCCCCTATGCAGATATG
TATCCCAGCCATTTATGAGTACAAGTACAATCTAACGACGTGTAAAAGCG
CAGCAAGTCTTGACCTTTGATGAGAAAGAGACCACACTCAAACCTACCGC
CTCAGCAGAGCTTTCAGATGCTGCCGTAGCCCTCACAACCCATGAAAGTG
TCATCCATCTTGTCATCGGTCCTGGAGTTAAGGACTACAATTTTCTCGAT
GGCAAACTGATACCAGTTTCCTCTTTCCATCACGATTTGCAGGTATCTAC
TAGTCAGGAACAAACCGCAATTGCAGCCTCGGAAGACGCTTCAACCCTCG
TAATAGCCTCCGATAATGGCAATGTAGTTGTGCTGCGGCTGGAACGCTTC
GAACCAGTTTTCAGCGGTCAAATCCATGCGAATGGAATCACCGACCTATG
TGTCAAGTCTGATGGGTCGCTGGTTGCTACCACGGGTCGCGACAAAGCAG
CCCACATCTGGAGAAGTCGGGATGGTGAAATCTTGCAGACACTGAAACCG
ATAATGGCCTCTTCGCACCGTACTCATATTCGGGCAACCCGCTTCTGTTC
TACACAATCTGACCTGTTGTTCACAGCAGAAAGTAATCCTCGGAAAGGCG
GGTGGATCGCAGCCTGGCGCAAGCCTAGTCCATCTGAGACCACTCTCTAT
ACACCTGTCACATCAATTAAAGCGTCAAGTGACGCTCTAACTGCAATGTG
TGTCAATACAGAGGGCTCACTCTTGGCGAGCAGCTCTGCTGAGGGGCATG
TTTCTCTCTTTGCTTGGAACGGTACCGCATTCTCGAAGAAGTGGAGTACG
GAGACAAGAACCCACCCATTCCGCCCACCAAAATCCCCACATATTCTTCC
GGTTACAGGGATGAGTTTTTCGGAGTCAGGAAAGTACCTCTTTGCGGCCT
CTGCGGACTACACTGTTTCGATTTGGCCAACTAAACCTCCGATCAGATGG
AGCAGATTTGGTCGACTCGTATGGTTGCTCAGCGTGTTCGTGTTGATCCT
CGCAATACTTGTCGCAGAAGATGGGCAATTGCACGAGGAGGTCAGAAGAA
GGCGGGCGATGGTTGCTCCGTACATGGAACCTCATCTGTCCGAAATGCAG
CGAGTTCTGAGGCCACTTATCAAGGAGAGTCGTCAAGCGATGCAACCGCA
CTTGTCTCAGTTGCGGGAAAGAACCAAGGCATATATCAACCTCGTCTCTG
AACAAGGCCACCCAGTTCTCGAGGCCGTCGGCAGAGTTTACCGCAGGCTT
TCCTTTGAAAATAATGGCGACAGACGCTCTCAGGAGTCCCAAACACTAGA
ATCTTTCGAAGACTTTCTCGACTTGTCTGCTGAGGTTCTGAACAGGAACG
GGAACTGCGAGCATGAGCAAGAAGGAAAGAAAATTATACTACATGCATAT
AAAACAGAAAGTTAA
back to top

Coding sequence (CDS) from alignment at tig00000122_pilon:393085..394649+

>Ggra2343.t1 ID=Ggra2343.t1|Name=Ggra2343.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000122_pilon:393085..394649+ (Gracilaria gracilis GNS1m male)
ATGGAACCGCTCACCCGCATTGTGTTCACTTTTCCAATCTATGCTCTCGG
TTGCTTGCCCGGTCATAGACTTGTCCTCGCCGGCGGCGGTGGCCGGATGA
AAAGCGGTATTCCTAATGTTTGCCAAGTCTTGACCTTTGATGAGAAAGAG
ACCACACTCAAACCTACCGCCTCAGCAGAGCTTTCAGATGCTGCCGTAGC
CCTCACAACCCATGAAAGTGTCATCCATCTTGTCATCGGTCCTGGAGTTA
AGGACTACAATTTTCTCGATGGCAAACTGATACCAGTTTCCTCTTTCCAT
CACGATTTGCAGGTATCTACTAGTCAGGAACAAACCGCAATTGCAGCCTC
GGAAGACGCTTCAACCCTCGTAATAGCCTCCGATAATGGCAATGTAGTTG
TGCTGCGGCTGGAACGCTTCGAACCAGTTTTCAGCGGTCAAATCCATGCG
AATGGAATCACCGACCTATGTGTCAAGTCTGATGGGTCGCTGGTTGCTAC
CACGGGTCGCGACAAAGCAGCCCACATCTGGAGAAGTCGGGATGGTGAAA
TCTTGCAGACACTGAAACCGATAATGGCCTCTTCGCACCGTACTCATATT
CGGGCAACCCGCTTCTGTTCTACACAATCTGACCTGTTGTTCACAGCAGA
AAGTAATCCTCGGAAAGGCGGGTGGATCGCAGCCTGGCGCAAGCCTAGTC
CATCTGAGACCACTCTCTATACACCTGTCACATCAATTAAAGCGTCAAGT
GACGCTCTAACTGCAATGTGTGTCAATACAGAGGGCTCACTCTTGGCGAG
CAGCTCTGCTGAGGGGCATGTTTCTCTCTTTGCTTGGAACGGTACCGCAT
TCTCGAAGAAGTGGAGTACGGAGACAAGAACCCACCCATTCCGCCCACCA
AAATCCCCACATATTCTTCCGGTTACAGGGATGAGTTTTTCGGAGTCAGG
AAAGTACCTCTTTGCGGCCTCTGCGGACTACACTGTTTCGATTTGGCCAA
CTAAACCTCCGATCAGATGGAGCAGATTTGGTCGACTCGTATGGTTGCTC
AGCGTGTTCGTGTTGATCCTCGCAATACTTGTCGCAGAAGATGGGCAATT
GCACGAGGAGGTCAGAAGAAGGCGGGCGATGGTTGCTCCGTACATGGAAC
CTCATCTGTCCGAAATGCAGCGAGTTCTGAGGCCACTTATCAAGGAGAGT
CGTCAAGCGATGCAACCGCACTTGTCTCAGTTGCGGGAAAGAACCAAGGC
ATATATCAACCTCGTCTCTGAACAAGGCCACCCAGTTCTCGAGGCCGTCG
GCAGAGTTTACCGCAGGCTTTCCTTTGAAAATAATGGCGACAGACGCTCT
CAGGAGTCCCAAACACTAGAATCTTTCGAAGACTTTCTCGACTTGTCTGC
TGAGGTTCTGAACAGGAACGGGAACTGCGAGCATGAGCAAGAAGGAAAGA
AAATTATACTACATGCATATAAAACAGAAAGTTAA
back to top