Ggra2338.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2338.t1
Unique NameGgra2338.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length127
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:343014..344101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2338Ggra2338Gracilaria gracilis GNS1m malegenetig00000122_pilon 343014..344101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2338.t1Ggra2338.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 343014..344101 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2338.t1.stop1Ggra2338.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 343014..343016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2338.t1.CDS1Ggra2338.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 343014..343036 -
Ggra2338.t1.CDS2Ggra2338.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000122_pilon 343138..343215 -
Ggra2338.t1.CDS3Ggra2338.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000122_pilon 343732..343885 -
Ggra2338.t1.CDS4Ggra2338.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000122_pilon 343976..344101 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2338.t1.exon1Ggra2338.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 343014..343036 -
Ggra2338.t1.exon2Ggra2338.t1.exon2Gracilaria gracilis GNS1m maleexontig00000122_pilon 343138..343215 -
Ggra2338.t1.exon3Ggra2338.t1.exon3Gracilaria gracilis GNS1m maleexontig00000122_pilon 343732..343885 -
Ggra2338.t1.exon4Ggra2338.t1.exon4Gracilaria gracilis GNS1m maleexontig00000122_pilon 343976..344101 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2338.t1.intron1Ggra2338.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000122_pilon 343037..343137 -
Ggra2338.t1.intron2Ggra2338.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000122_pilon 343216..343731 -
Ggra2338.t1.intron3Ggra2338.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000122_pilon 343886..343975 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2338.t1.start1Ggra2338.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 344099..344101 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2338.t1 ID=Ggra2338.t1|Name=Ggra2338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=127bp
MRPGSPVGVGAVDDGHAVSAEKVVDEGATRRRSGGHTEKDNSAIGEVTPK
DVSTGDSRSGDMTSIVRLISVAFAALGRSRRRQLRDDKKRALFATLLLPH
ANRHVPFDVVPAVQNVSTLGFTGFDF*
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spliced messenger RNA

>Ggra2338.t1 ID=Ggra2338.t1|Name=Ggra2338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00000122_pilon:343014..344101- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCCAGGGAGTCCAGTTGGTGTTGGAGCGGTCGACGATGGTCATGC
TGTAAGCGCAGAGAAAGTGGTTGACGAAGGTGCGACGCGGCGGCGATCGG
GCGGTCACACTGAGAAAGACAACTCGGCAATTGGTGAAGTGACACCGAAA
GATGTAAGTACGGGCGACAGCCGCTCCGGAGACATGACATCCATTGTGCG
GCTGATCTCGGTTGCGTTTGCTGCGCTAGGCCGTTCTCGTCGCCGCCAGC
TGCGAGACGACAAGAAGCGGGCGCTATTCGCAACACTGTTACTGCCACAT
GCAAACCGTCATGTGCCCTTCGACGTGGTCCCCGCCGTGCAGAACGTCTC
CACTCTTGGGTTTACTGGCTTTGATTTTTAA
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protein sequence of Ggra2338.t1

>Ggra2338.t1 ID=Ggra2338.t1|Name=Ggra2338.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=127bp
MRPGSPVGVGAVDDGHAVSAEKVVDEGATRRRSGGHTEKDNSAIGEVTPK
DVSTGDSRSGDMTSIVRLISVAFAALGRSRRRQLRDDKKRALFATLLLPH
ANRHVPFDVVPAVQNVSTLGFTGFDF*
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mRNA from alignment at tig00000122_pilon:343014..344101-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2338.t1 ID=Ggra2338.t1|Name=Ggra2338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1088bp|location=Sequence derived from alignment at tig00000122_pilon:343014..344101- (Gracilaria gracilis GNS1m male)
ATGCGGCCAGGGAGTCCAGTTGGTGTTGGAGCGGTCGACGATGGTCATGC
TGTAAGCGCAGAGAAAGTGGTTGACGAAGGTGCGACGCGGCGGCGATCGG
GCGGTCACACTGAGAAAGACAACTCGGTGAGTTGGAGTTGACGAGAAGAC
GGGTGTCGGGGAAACGTAACAATCGTAGACGTGCAATACGTGTTACTTTT
GGCTGTGTACAGACAGGCAATTGGTGAAGTGACACCGAAAGATGTAAGTA
CGGGCGACAGCCGCTCCGGAGACATGACATCCATTGTGCGGCTGATCTCG
GTTGCGTTTGCTGCGCTAGGCCGTTCTCGTCGCCGCCAGCTGCGAGACGA
CAAGAAGCGGGCGCTATTCGGTTCGGCCATTGCGCCGCGCTTCGTAGTGG
CCGCTGCGCTCAGCGACGCGAAGGCGCGCGTGTTCAAAGTGGTGTCTGCG
CTGCGGCGACAGTGCAATGGATGTCGGGTGGTAGGACGTGGCAAGAAGGT
TTACGTGCTCTATAGGGTACATCCGCGCCGCAAGCAGCGTCAGGGAAAGG
GAGTTTTCCTCCGCCGCCGCTTCTTTCCCTTGCGTCTACATGGAGTTCAC
CTCGCTGTGATACTGTTATCACGATATTGTCTCCATATGTGCAACGAGAC
CACGTTCTGCAGTAATCTAGAGTGTACGATTGTACTCCCTAACTCTGCCG
TTCCAGTGCAGGCCTTGTATCCTTATCACAAGGATGTGTACTGTGCCACA
AGCCATCACGGCGTGATCCATGATGTGTTGATCTCTGTTACCCATGCTCC
AAGTGCAGCTCCTCAGCCTCGCGCACAGCTCTCCTTACGCCAAATCTACG
TGAATCGTTCATGTGCCGCATGTTCTCTTTGCTTAGCAACACTGTTACTG
CCACATGCAAACCGTCATGTGCCCTTCGACGTGGTCCCCGCCGTGCAGAA
CGTCTCCACTCTTGGTACGAACAGACTCATTGCTGTGTTCGCAAAACTTC
CACGACACATTCGCGCGGGCTTCTCATCACATGTAACTCATATATCTCTG
CTCCTCAAACAAAAGGGTTTACTGGCTTTGATTTTTAA
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Coding sequence (CDS) from alignment at tig00000122_pilon:343014..344101-

>Ggra2338.t1 ID=Ggra2338.t1|Name=Ggra2338.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=381bp|location=Sequence derived from alignment at tig00000122_pilon:343014..344101- (Gracilaria gracilis GNS1m male)
ATGCGGCCAGGGAGTCCAGTTGGTGTTGGAGCGGTCGACGATGGTCATGC
TGTAAGCGCAGAGAAAGTGGTTGACGAAGGTGCGACGCGGCGGCGATCGG
GCGGTCACACTGAGAAAGACAACTCGGCAATTGGTGAAGTGACACCGAAA
GATGTAAGTACGGGCGACAGCCGCTCCGGAGACATGACATCCATTGTGCG
GCTGATCTCGGTTGCGTTTGCTGCGCTAGGCCGTTCTCGTCGCCGCCAGC
TGCGAGACGACAAGAAGCGGGCGCTATTCGCAACACTGTTACTGCCACAT
GCAAACCGTCATGTGCCCTTCGACGTGGTCCCCGCCGTGCAGAACGTCTC
CACTCTTGGGTTTACTGGCTTTGATTTTTAA
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