Ggra2336.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2336.t1
Unique NameGgra2336.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length301
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:295139..296041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2336Ggra2336Gracilaria gracilis GNS1m malegenetig00000122_pilon 295139..296041 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2336.t1.start1Ggra2336.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 295139..295141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2336.t1.CDS1Ggra2336.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 295139..296041 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2336.t1.exon1Ggra2336.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 295139..296041 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2336.t1.stop1Ggra2336.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 296039..296041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2336.t1Ggra2336.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 295139..296041 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2336.t1 ID=Ggra2336.t1|Name=Ggra2336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=301bp
MAETPGAQVAPVAHPPVTLPPNIPRVADDAQDDPTPLKIQPAEAPDNMLE
ELPDLSAAQSSTIPLETPTAQSTPDIGQMQTLESQPLCMPSKQPFCRKAS
KKKTQAKVIPKLDVIQPLAPALAAVSHPLANIPLAPAIGAAYPFPALANP
NLLPHPFVSLPLQAPRRAVRIAPMGVLPLPPPGAAALVADFHAAAAVVPD
EPRRIQELSKAKRRGSTMNTVTSEQALTAEERTRQKRMLRNRESAARSRD
KRRNRNIQLQTSIQRYREKKKEMDEVIQELKLLCDTMRHTLEKHNISVPP
*
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spliced messenger RNA

>Ggra2336.t1 ID=Ggra2336.t1|Name=Ggra2336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000122_pilon:295139..296041+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGACCCCAGGCGCGCAAGTAGCGCCCGTCGCGCACCCGCCCGT
GACTCTCCCGCCCAATATTCCACGCGTCGCGGACGATGCGCAAGATGATC
CCACGCCGCTCAAAATCCAACCCGCCGAAGCGCCAGACAACATGCTCGAA
GAGTTGCCTGATTTGTCCGCCGCACAGTCTTCCACGATTCCGCTCGAGAC
CCCGACAGCTCAGTCGACCCCCGACATTGGGCAGATGCAAACTTTGGAAT
CGCAACCACTTTGCATGCCATCAAAGCAGCCTTTCTGTCGCAAAGCATCG
AAGAAAAAGACGCAAGCGAAGGTCATACCGAAACTTGACGTCATACAGCC
ACTCGCCCCAGCGCTCGCCGCCGTCTCCCACCCGCTCGCCAACATCCCTC
TCGCGCCTGCCATAGGTGCCGCTTATCCATTTCCTGCGTTAGCCAATCCA
AACCTGCTTCCTCACCCGTTCGTCTCCCTGCCACTACAAGCGCCGCGACG
AGCCGTGCGCATTGCCCCTATGGGCGTGCTTCCTCTACCGCCCCCCGGTG
CTGCCGCGCTCGTCGCAGATTTCCATGCTGCTGCCGCCGTAGTGCCGGAC
GAACCACGCCGCATACAAGAGCTCTCCAAGGCGAAAAGACGCGGCTCCAC
CATGAACACTGTGACTTCCGAACAAGCACTTACGGCGGAAGAAAGGACTC
GCCAGAAACGGATGCTACGAAATCGTGAAAGCGCCGCACGCTCCCGAGAC
AAACGGCGCAACCGCAATATTCAACTACAAACTTCCATCCAACGATATCG
TGAAAAGAAGAAGGAAATGGATGAGGTCATTCAAGAACTTAAGCTCTTGT
GTGATACTATGCGTCATACTCTAGAGAAGCACAACATATCCGTGCCTCCT
TAA
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protein sequence of Ggra2336.t1

>Ggra2336.t1 ID=Ggra2336.t1|Name=Ggra2336.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=301bp
MAETPGAQVAPVAHPPVTLPPNIPRVADDAQDDPTPLKIQPAEAPDNMLE
ELPDLSAAQSSTIPLETPTAQSTPDIGQMQTLESQPLCMPSKQPFCRKAS
KKKTQAKVIPKLDVIQPLAPALAAVSHPLANIPLAPAIGAAYPFPALANP
NLLPHPFVSLPLQAPRRAVRIAPMGVLPLPPPGAAALVADFHAAAAVVPD
EPRRIQELSKAKRRGSTMNTVTSEQALTAEERTRQKRMLRNRESAARSRD
KRRNRNIQLQTSIQRYREKKKEMDEVIQELKLLCDTMRHTLEKHNISVPP
*
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mRNA from alignment at tig00000122_pilon:295139..296041+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2336.t1 ID=Ggra2336.t1|Name=Ggra2336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=903bp|location=Sequence derived from alignment at tig00000122_pilon:295139..296041+ (Gracilaria gracilis GNS1m male)
ATGGCCGAGACCCCAGGCGCGCAAGTAGCGCCCGTCGCGCACCCGCCCGT
GACTCTCCCGCCCAATATTCCACGCGTCGCGGACGATGCGCAAGATGATC
CCACGCCGCTCAAAATCCAACCCGCCGAAGCGCCAGACAACATGCTCGAA
GAGTTGCCTGATTTGTCCGCCGCACAGTCTTCCACGATTCCGCTCGAGAC
CCCGACAGCTCAGTCGACCCCCGACATTGGGCAGATGCAAACTTTGGAAT
CGCAACCACTTTGCATGCCATCAAAGCAGCCTTTCTGTCGCAAAGCATCG
AAGAAAAAGACGCAAGCGAAGGTCATACCGAAACTTGACGTCATACAGCC
ACTCGCCCCAGCGCTCGCCGCCGTCTCCCACCCGCTCGCCAACATCCCTC
TCGCGCCTGCCATAGGTGCCGCTTATCCATTTCCTGCGTTAGCCAATCCA
AACCTGCTTCCTCACCCGTTCGTCTCCCTGCCACTACAAGCGCCGCGACG
AGCCGTGCGCATTGCCCCTATGGGCGTGCTTCCTCTACCGCCCCCCGGTG
CTGCCGCGCTCGTCGCAGATTTCCATGCTGCTGCCGCCGTAGTGCCGGAC
GAACCACGCCGCATACAAGAGCTCTCCAAGGCGAAAAGACGCGGCTCCAC
CATGAACACTGTGACTTCCGAACAAGCACTTACGGCGGAAGAAAGGACTC
GCCAGAAACGGATGCTACGAAATCGTGAAAGCGCCGCACGCTCCCGAGAC
AAACGGCGCAACCGCAATATTCAACTACAAACTTCCATCCAACGATATCG
TGAAAAGAAGAAGGAAATGGATGAGGTCATTCAAGAACTTAAGCTCTTGT
GTGATACTATGCGTCATACTCTAGAGAAGCACAACATATCCGTGCCTCCT
TAA
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Coding sequence (CDS) from alignment at tig00000122_pilon:295139..296041+

>Ggra2336.t1 ID=Ggra2336.t1|Name=Ggra2336.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=903bp|location=Sequence derived from alignment at tig00000122_pilon:295139..296041+ (Gracilaria gracilis GNS1m male)
ATGGCCGAGACCCCAGGCGCGCAAGTAGCGCCCGTCGCGCACCCGCCCGT
GACTCTCCCGCCCAATATTCCACGCGTCGCGGACGATGCGCAAGATGATC
CCACGCCGCTCAAAATCCAACCCGCCGAAGCGCCAGACAACATGCTCGAA
GAGTTGCCTGATTTGTCCGCCGCACAGTCTTCCACGATTCCGCTCGAGAC
CCCGACAGCTCAGTCGACCCCCGACATTGGGCAGATGCAAACTTTGGAAT
CGCAACCACTTTGCATGCCATCAAAGCAGCCTTTCTGTCGCAAAGCATCG
AAGAAAAAGACGCAAGCGAAGGTCATACCGAAACTTGACGTCATACAGCC
ACTCGCCCCAGCGCTCGCCGCCGTCTCCCACCCGCTCGCCAACATCCCTC
TCGCGCCTGCCATAGGTGCCGCTTATCCATTTCCTGCGTTAGCCAATCCA
AACCTGCTTCCTCACCCGTTCGTCTCCCTGCCACTACAAGCGCCGCGACG
AGCCGTGCGCATTGCCCCTATGGGCGTGCTTCCTCTACCGCCCCCCGGTG
CTGCCGCGCTCGTCGCAGATTTCCATGCTGCTGCCGCCGTAGTGCCGGAC
GAACCACGCCGCATACAAGAGCTCTCCAAGGCGAAAAGACGCGGCTCCAC
CATGAACACTGTGACTTCCGAACAAGCACTTACGGCGGAAGAAAGGACTC
GCCAGAAACGGATGCTACGAAATCGTGAAAGCGCCGCACGCTCCCGAGAC
AAACGGCGCAACCGCAATATTCAACTACAAACTTCCATCCAACGATATCG
TGAAAAGAAGAAGGAAATGGATGAGGTCATTCAAGAACTTAAGCTCTTGT
GTGATACTATGCGTCATACTCTAGAGAAGCACAACATATCCGTGCCTCCT
TAA
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