Ggra2331.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2331.t1
Unique NameGgra2331.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:281952..282947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395961.Cyan7425_2561
PFAMsDUF1995
Max annot lvl1117|Cyanobacteria
Evalue0.000117
EggNOG OGs28IM3@1|root,2Z8MN@2|Bacteria,1G1IH@1117|Cyanobacteria,3KG5F@43988|Cyanothece
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2331Ggra2331Gracilaria gracilis GNS1m malegenetig00000122_pilon 281952..282947 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2331.t1.stop1Ggra2331.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 281952..281954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2331.t1.CDS1Ggra2331.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 281952..282947 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2331.t1.exon1Ggra2331.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 281952..282947 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2331.t1.start1Ggra2331.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 282945..282947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2331.t1Ggra2331.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 281952..282947 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2331.t1 ID=Ggra2331.t1|Name=Ggra2331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MSALCSPAFAAPPTRLPLAPSRLLNPTRRRPPRRRPPPTLRETPADHSIP
RPDAKDAAFIPQTIEYALRQSHAATAHALVEGHTHLRVELPIGRTRKHWY
RMSPLPTSYAETALLAFHYASLFKGLRIHLVLTHPSPLTHPVPWVHGVHH
IDHRDVLSVLSEPQRPEQHRVIILAALRSQHVPLLQKLAAVKADAIILLN
SFLDEPLVGPIHPFVDTYVVRALQKSAVMRARYNTPWHVFIEIAVFEYEW
VGDCDSSWRPTQRRVENFALSRDAQTKAVNGYWRTPYAGCEAGFWPFMTL
ACRELLPLDGRVLDQINNEKKQKAQRPFGFF*
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spliced messenger RNA

>Ggra2331.t1 ID=Ggra2331.t1|Name=Ggra2331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000122_pilon:281952..282947- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTCTTTGCTCTCCCGCCTTTGCGGCACCGCCCACCCGTCTCCC
GTTAGCCCCCAGTCGCTTGCTCAACCCCACCCGCCGACGCCCTCCACGCC
GACGCCCGCCTCCCACGCTACGTGAAACCCCCGCCGATCATTCTATACCG
CGCCCCGATGCGAAAGATGCTGCCTTCATCCCCCAGACAATCGAGTATGC
TCTTCGCCAGTCTCACGCCGCAACTGCCCATGCGCTGGTCGAAGGCCACA
CTCATCTCCGGGTCGAACTGCCGATAGGTCGCACCCGTAAACACTGGTAC
CGCATGTCTCCCCTGCCTACTTCGTACGCAGAGACCGCACTGCTTGCCTT
CCACTACGCCAGCCTTTTCAAGGGCCTGCGCATTCACCTCGTGCTCACAC
ATCCCTCTCCGCTAACGCACCCAGTGCCCTGGGTTCATGGCGTGCATCAC
ATCGATCATCGCGATGTTCTGTCCGTGCTTAGCGAACCGCAGCGCCCCGA
GCAGCATCGTGTCATCATCCTGGCCGCCCTGCGATCGCAACATGTGCCAC
TCCTGCAAAAGCTGGCAGCGGTCAAAGCCGATGCAATCATTCTTCTCAAC
TCTTTTTTGGATGAACCCCTCGTCGGCCCCATTCACCCCTTTGTAGACAC
ATACGTTGTGCGTGCGTTGCAGAAGAGCGCTGTGATGCGTGCCCGCTACA
ACACCCCCTGGCACGTCTTCATTGAAATAGCCGTCTTTGAGTATGAATGG
GTGGGCGATTGTGACAGCTCCTGGCGCCCGACACAACGGCGAGTCGAAAA
TTTTGCCCTCAGCAGGGATGCACAGACTAAGGCCGTGAATGGCTATTGGC
GCACGCCGTACGCAGGATGCGAAGCAGGTTTTTGGCCTTTCATGACCCTT
GCCTGTCGGGAACTATTACCTTTAGACGGCCGCGTGCTGGACCAGATCAA
CAACGAAAAGAAACAAAAAGCTCAGCGCCCCTTCGGCTTCTTTTAA
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protein sequence of Ggra2331.t1

>Ggra2331.t1 ID=Ggra2331.t1|Name=Ggra2331.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MSALCSPAFAAPPTRLPLAPSRLLNPTRRRPPRRRPPPTLRETPADHSIP
RPDAKDAAFIPQTIEYALRQSHAATAHALVEGHTHLRVELPIGRTRKHWY
RMSPLPTSYAETALLAFHYASLFKGLRIHLVLTHPSPLTHPVPWVHGVHH
IDHRDVLSVLSEPQRPEQHRVIILAALRSQHVPLLQKLAAVKADAIILLN
SFLDEPLVGPIHPFVDTYVVRALQKSAVMRARYNTPWHVFIEIAVFEYEW
VGDCDSSWRPTQRRVENFALSRDAQTKAVNGYWRTPYAGCEAGFWPFMTL
ACRELLPLDGRVLDQINNEKKQKAQRPFGFF*
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mRNA from alignment at tig00000122_pilon:281952..282947-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2331.t1 ID=Ggra2331.t1|Name=Ggra2331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000122_pilon:281952..282947- (Gracilaria gracilis GNS1m male)
ATGTCTGCTCTTTGCTCTCCCGCCTTTGCGGCACCGCCCACCCGTCTCCC
GTTAGCCCCCAGTCGCTTGCTCAACCCCACCCGCCGACGCCCTCCACGCC
GACGCCCGCCTCCCACGCTACGTGAAACCCCCGCCGATCATTCTATACCG
CGCCCCGATGCGAAAGATGCTGCCTTCATCCCCCAGACAATCGAGTATGC
TCTTCGCCAGTCTCACGCCGCAACTGCCCATGCGCTGGTCGAAGGCCACA
CTCATCTCCGGGTCGAACTGCCGATAGGTCGCACCCGTAAACACTGGTAC
CGCATGTCTCCCCTGCCTACTTCGTACGCAGAGACCGCACTGCTTGCCTT
CCACTACGCCAGCCTTTTCAAGGGCCTGCGCATTCACCTCGTGCTCACAC
ATCCCTCTCCGCTAACGCACCCAGTGCCCTGGGTTCATGGCGTGCATCAC
ATCGATCATCGCGATGTTCTGTCCGTGCTTAGCGAACCGCAGCGCCCCGA
GCAGCATCGTGTCATCATCCTGGCCGCCCTGCGATCGCAACATGTGCCAC
TCCTGCAAAAGCTGGCAGCGGTCAAAGCCGATGCAATCATTCTTCTCAAC
TCTTTTTTGGATGAACCCCTCGTCGGCCCCATTCACCCCTTTGTAGACAC
ATACGTTGTGCGTGCGTTGCAGAAGAGCGCTGTGATGCGTGCCCGCTACA
ACACCCCCTGGCACGTCTTCATTGAAATAGCCGTCTTTGAGTATGAATGG
GTGGGCGATTGTGACAGCTCCTGGCGCCCGACACAACGGCGAGTCGAAAA
TTTTGCCCTCAGCAGGGATGCACAGACTAAGGCCGTGAATGGCTATTGGC
GCACGCCGTACGCAGGATGCGAAGCAGGTTTTTGGCCTTTCATGACCCTT
GCCTGTCGGGAACTATTACCTTTAGACGGCCGCGTGCTGGACCAGATCAA
CAACGAAAAGAAACAAAAAGCTCAGCGCCCCTTCGGCTTCTTTTAA
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Coding sequence (CDS) from alignment at tig00000122_pilon:281952..282947-

>Ggra2331.t1 ID=Ggra2331.t1|Name=Ggra2331.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000122_pilon:281952..282947- (Gracilaria gracilis GNS1m male)
ATGTCTGCTCTTTGCTCTCCCGCCTTTGCGGCACCGCCCACCCGTCTCCC
GTTAGCCCCCAGTCGCTTGCTCAACCCCACCCGCCGACGCCCTCCACGCC
GACGCCCGCCTCCCACGCTACGTGAAACCCCCGCCGATCATTCTATACCG
CGCCCCGATGCGAAAGATGCTGCCTTCATCCCCCAGACAATCGAGTATGC
TCTTCGCCAGTCTCACGCCGCAACTGCCCATGCGCTGGTCGAAGGCCACA
CTCATCTCCGGGTCGAACTGCCGATAGGTCGCACCCGTAAACACTGGTAC
CGCATGTCTCCCCTGCCTACTTCGTACGCAGAGACCGCACTGCTTGCCTT
CCACTACGCCAGCCTTTTCAAGGGCCTGCGCATTCACCTCGTGCTCACAC
ATCCCTCTCCGCTAACGCACCCAGTGCCCTGGGTTCATGGCGTGCATCAC
ATCGATCATCGCGATGTTCTGTCCGTGCTTAGCGAACCGCAGCGCCCCGA
GCAGCATCGTGTCATCATCCTGGCCGCCCTGCGATCGCAACATGTGCCAC
TCCTGCAAAAGCTGGCAGCGGTCAAAGCCGATGCAATCATTCTTCTCAAC
TCTTTTTTGGATGAACCCCTCGTCGGCCCCATTCACCCCTTTGTAGACAC
ATACGTTGTGCGTGCGTTGCAGAAGAGCGCTGTGATGCGTGCCCGCTACA
ACACCCCCTGGCACGTCTTCATTGAAATAGCCGTCTTTGAGTATGAATGG
GTGGGCGATTGTGACAGCTCCTGGCGCCCGACACAACGGCGAGTCGAAAA
TTTTGCCCTCAGCAGGGATGCACAGACTAAGGCCGTGAATGGCTATTGGC
GCACGCCGTACGCAGGATGCGAAGCAGGTTTTTGGCCTTTCATGACCCTT
GCCTGTCGGGAACTATTACCTTTAGACGGCCGCGTGCTGGACCAGATCAA
CAACGAAAAGAAACAAAAAGCTCAGCGCCCCTTCGGCTTCTTTTAA
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