Ggra2330.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2330.t1
Unique Name	Ggra2330.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	375

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000122_pilon	contig	tig00000122_pilon:280749..281873 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703296.1
PFAMs	ABC2_membrane,ABC2_membrane_3,ABC_tran
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0007275,GO:0008150,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0042335,GO:0042623,GO:0042626,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0097708,GO:0098533,GO:0098796,GO:0098797,GO:1902494,GO:1902495,GO:1904949,GO:1990351
Evalue	9.61e-118
EggNOG OGs	COG1131@1\|root,KOG0059@2759\|Eukaryota
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2330	Ggra2330	Gracilaria gracilis GNS1m male	gene	tig00000122_pilon 280749..281873 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2330.t1.start1	Ggra2330.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000122_pilon 280749..280751 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2330.t1.CDS1	Ggra2330.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000122_pilon 280749..281873 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2330.t1.exon1	Ggra2330.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000122_pilon 280749..281873 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2330.t1.stop1	Ggra2330.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000122_pilon 281871..281873 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2330.t1	Ggra2330.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000122_pilon 280749..281873 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000122_pilon:280749..281873+
coding sequence from alignment at tig00000122_pilon:280749..281873+

mRNA sequence

>Ggra2330.t1 ID=Ggra2330.t1|Name=Ggra2330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp
MILDFFRGSRTVNITTLAKDHPAVSVTNLRKSFKKRVKGPGSKKPQNLTI
TAVDNLTFSVPPGRILGLLGPNSSGKTTTLRCMSTLASPDSGSIKYYGID
TVKEASLVRNMIGYVAQSAGLDKVLTGREHLEMFANIAHLGRSEIPIVIE
NLIELLRLEDFIDRQTGVYSGGVIRRLDLAIALLHQPPILILDEPTVGLD
IETRRVIWDVLRSWRDDAGTVILSSHYLEEVDLLSDDIVILEKGVMLAHG
SSAELKASLGGDRVTVRLNEFTSLESAESACTTLKKRGLVQAAIINRLKN
NALELVVDSRNAKIGTEIVHCLGDIGYQRLFSFAQSKPSLDDVYLAATGR
SLLDADIQAKESRSEKSVRKENMA*

spliced messenger RNA

>Ggra2330.t1 ID=Ggra2330.t1|Name=Ggra2330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000122_pilon:280749..281873+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTTAGATTTCTTCAGAGGTTCTCGGACTGTGAACATTACAACACT
TGCCAAAGATCACCCCGCAGTCAGCGTCACCAATCTTCGAAAGTCTTTCA
AAAAACGAGTCAAAGGTCCTGGGTCCAAGAAGCCTCAAAATCTAACCATC
ACAGCTGTCGATAATCTCACATTCTCTGTTCCACCCGGACGAATCTTGGG
CTTGCTGGGTCCGAACAGCAGCGGGAAGACCACAACTTTAAGATGCATGT
CCACCCTCGCTTCACCGGATAGTGGATCCATCAAATACTACGGCATAGAT
ACAGTGAAAGAAGCATCCCTCGTGCGAAACATGATAGGGTATGTGGCACA
GAGTGCGGGCTTGGACAAAGTGCTGACTGGCAGAGAGCATCTGGAAATGT
TTGCGAACATTGCGCACCTTGGCCGCTCTGAAATACCGATTGTCATTGAA
AACCTCATAGAATTGCTTCGTTTGGAAGACTTCATCGATCGACAGACTGG
CGTGTACTCTGGTGGCGTTATAAGGCGTCTCGATTTGGCCATAGCTCTGT
TACATCAGCCTCCTATCCTTATTCTTGATGAACCCACTGTTGGCCTAGAC
ATTGAAACACGTAGAGTGATTTGGGATGTCTTACGTTCATGGCGTGATGA
TGCGGGTACCGTAATACTCTCTTCGCATTATTTGGAGGAAGTCGACCTTC
TTTCGGACGACATTGTTATTCTCGAGAAGGGCGTGATGCTAGCACATGGG
TCCTCCGCTGAGTTGAAGGCAAGTCTAGGTGGGGATCGCGTTACAGTGCG
ACTGAACGAGTTTACAAGCTTGGAAAGCGCTGAGAGCGCGTGCACTACGT
TAAAGAAGCGTGGTCTAGTGCAAGCGGCAATTATCAATCGCTTGAAGAAC
AACGCTTTAGAGCTGGTGGTAGACTCGAGAAATGCAAAGATTGGCACAGA
GATAGTCCACTGTCTGGGAGATATAGGATATCAGAGACTGTTTAGTTTTG
CTCAGAGCAAGCCCAGTCTAGACGATGTGTATCTGGCTGCAACTGGTCGT
TCACTGCTAGATGCCGATATCCAAGCCAAAGAGAGTCGTTCCGAGAAATC
GGTACGAAAGGAAAATATGGCCTAA

protein sequence of Ggra2330.t1

>Ggra2330.t1 ID=Ggra2330.t1|Name=Ggra2330.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=375bp
MILDFFRGSRTVNITTLAKDHPAVSVTNLRKSFKKRVKGPGSKKPQNLTI
TAVDNLTFSVPPGRILGLLGPNSSGKTTTLRCMSTLASPDSGSIKYYGID
TVKEASLVRNMIGYVAQSAGLDKVLTGREHLEMFANIAHLGRSEIPIVIE
NLIELLRLEDFIDRQTGVYSGGVIRRLDLAIALLHQPPILILDEPTVGLD
IETRRVIWDVLRSWRDDAGTVILSSHYLEEVDLLSDDIVILEKGVMLAHG
SSAELKASLGGDRVTVRLNEFTSLESAESACTTLKKRGLVQAAIINRLKN
NALELVVDSRNAKIGTEIVHCLGDIGYQRLFSFAQSKPSLDDVYLAATGR
SLLDADIQAKESRSEKSVRKENMA*

mRNA from alignment at tig00000122_pilon:280749..281873+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2330.t1 ID=Ggra2330.t1|Name=Ggra2330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1125bp|location=Sequence derived from alignment at tig00000122_pilon:280749..281873+ (Gracilaria gracilis GNS1m male)
ATGATCTTAGATTTCTTCAGAGGTTCTCGGACTGTGAACATTACAACACT
TGCCAAAGATCACCCCGCAGTCAGCGTCACCAATCTTCGAAAGTCTTTCA
AAAAACGAGTCAAAGGTCCTGGGTCCAAGAAGCCTCAAAATCTAACCATC
ACAGCTGTCGATAATCTCACATTCTCTGTTCCACCCGGACGAATCTTGGG
CTTGCTGGGTCCGAACAGCAGCGGGAAGACCACAACTTTAAGATGCATGT
CCACCCTCGCTTCACCGGATAGTGGATCCATCAAATACTACGGCATAGAT
ACAGTGAAAGAAGCATCCCTCGTGCGAAACATGATAGGGTATGTGGCACA
GAGTGCGGGCTTGGACAAAGTGCTGACTGGCAGAGAGCATCTGGAAATGT
TTGCGAACATTGCGCACCTTGGCCGCTCTGAAATACCGATTGTCATTGAA
AACCTCATAGAATTGCTTCGTTTGGAAGACTTCATCGATCGACAGACTGG
CGTGTACTCTGGTGGCGTTATAAGGCGTCTCGATTTGGCCATAGCTCTGT
TACATCAGCCTCCTATCCTTATTCTTGATGAACCCACTGTTGGCCTAGAC
ATTGAAACACGTAGAGTGATTTGGGATGTCTTACGTTCATGGCGTGATGA
TGCGGGTACCGTAATACTCTCTTCGCATTATTTGGAGGAAGTCGACCTTC
TTTCGGACGACATTGTTATTCTCGAGAAGGGCGTGATGCTAGCACATGGG
TCCTCCGCTGAGTTGAAGGCAAGTCTAGGTGGGGATCGCGTTACAGTGCG
ACTGAACGAGTTTACAAGCTTGGAAAGCGCTGAGAGCGCGTGCACTACGT
TAAAGAAGCGTGGTCTAGTGCAAGCGGCAATTATCAATCGCTTGAAGAAC
AACGCTTTAGAGCTGGTGGTAGACTCGAGAAATGCAAAGATTGGCACAGA
GATAGTCCACTGTCTGGGAGATATAGGATATCAGAGACTGTTTAGTTTTG
CTCAGAGCAAGCCCAGTCTAGACGATGTGTATCTGGCTGCAACTGGTCGT
TCACTGCTAGATGCCGATATCCAAGCCAAAGAGAGTCGTTCCGAGAAATC
GGTACGAAAGGAAAATATGGCCTAA

Coding sequence (CDS) from alignment at tig00000122_pilon:280749..281873+

>Ggra2330.t1 ID=Ggra2330.t1|Name=Ggra2330.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1125bp|location=Sequence derived from alignment at tig00000122_pilon:280749..281873+ (Gracilaria gracilis GNS1m male)
ATGATCTTAGATTTCTTCAGAGGTTCTCGGACTGTGAACATTACAACACT
TGCCAAAGATCACCCCGCAGTCAGCGTCACCAATCTTCGAAAGTCTTTCA
AAAAACGAGTCAAAGGTCCTGGGTCCAAGAAGCCTCAAAATCTAACCATC
ACAGCTGTCGATAATCTCACATTCTCTGTTCCACCCGGACGAATCTTGGG
CTTGCTGGGTCCGAACAGCAGCGGGAAGACCACAACTTTAAGATGCATGT
CCACCCTCGCTTCACCGGATAGTGGATCCATCAAATACTACGGCATAGAT
ACAGTGAAAGAAGCATCCCTCGTGCGAAACATGATAGGGTATGTGGCACA
GAGTGCGGGCTTGGACAAAGTGCTGACTGGCAGAGAGCATCTGGAAATGT
TTGCGAACATTGCGCACCTTGGCCGCTCTGAAATACCGATTGTCATTGAA
AACCTCATAGAATTGCTTCGTTTGGAAGACTTCATCGATCGACAGACTGG
CGTGTACTCTGGTGGCGTTATAAGGCGTCTCGATTTGGCCATAGCTCTGT
TACATCAGCCTCCTATCCTTATTCTTGATGAACCCACTGTTGGCCTAGAC
ATTGAAACACGTAGAGTGATTTGGGATGTCTTACGTTCATGGCGTGATGA
TGCGGGTACCGTAATACTCTCTTCGCATTATTTGGAGGAAGTCGACCTTC
TTTCGGACGACATTGTTATTCTCGAGAAGGGCGTGATGCTAGCACATGGG
TCCTCCGCTGAGTTGAAGGCAAGTCTAGGTGGGGATCGCGTTACAGTGCG
ACTGAACGAGTTTACAAGCTTGGAAAGCGCTGAGAGCGCGTGCACTACGT
TAAAGAAGCGTGGTCTAGTGCAAGCGGCAATTATCAATCGCTTGAAGAAC
AACGCTTTAGAGCTGGTGGTAGACTCGAGAAATGCAAAGATTGGCACAGA
GATAGTCCACTGTCTGGGAGATATAGGATATCAGAGACTGTTTAGTTTTG
CTCAGAGCAAGCCCAGTCTAGACGATGTGTATCTGGCTGCAACTGGTCGT
TCACTGCTAGATGCCGATATCCAAGCCAAAGAGAGTCGTTCCGAGAAATC
GGTACGAAAGGAAAATATGGCCTAA