Ggra2325.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2325.t1
Unique NameGgra2325.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:250480..251620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6669.EFX72853
Max annot lvl33208|Metazoa
Evalue6.55e-46
EggNOG OGs2CMUJ@1|root,2QS0X@2759|Eukaryota,39VGF@33154|Opisthokonta,3C21T@33208|Metazoa,3E4IW@33213|Bilateria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2325Ggra2325Gracilaria gracilis GNS1m malegenetig00000122_pilon 250480..251620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2325.t1Ggra2325.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 250480..251620 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2325.t1.start1Ggra2325.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 250480..250482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2325.t1.CDS1Ggra2325.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 250480..251337 +
Ggra2325.t1.CDS2Ggra2325.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000122_pilon 251426..251620 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2325.t1.exon1Ggra2325.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 250480..251337 +
Ggra2325.t1.exon2Ggra2325.t1.exon2Gracilaria gracilis GNS1m maleexontig00000122_pilon 251426..251620 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2325.t1.intron1Ggra2325.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000122_pilon 251338..251425 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2325.t1.stop1Ggra2325.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 251618..251620 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2325.t1 ID=Ggra2325.t1|Name=Ggra2325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MKYEPLRFREKTSDFFGKKGISWHGTVVFYMPAIYDANNKYSGPDHLSML
FYNHVVQSDTQQDVTAVASILETVMMRVRIDLPTSTKVIVLSDNAACYQN
TTLPIILPFIAKANGLALLRFMHTETQDGKSIVDAHFAIAMRHVCRIVAE
GKDVTTPTSLIAALRAGGGLKNSAAELIRIDRTNENLASWEGLRGKNNNG
LPWIGRNNEYEYSGWSHGARRVSVKCFRYSGHGSGRPCQFGRAGACKPAK
SVEEVISWKDTLENTQSTANTRLLTADGETVGMETGRPAQLLELEKMMMM
IRNLTLNGMVALNAETVESDSLPKGVFSNTKEVVMSLLIPRGVRALWVVA
*
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spliced messenger RNA

>Ggra2325.t1 ID=Ggra2325.t1|Name=Ggra2325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000122_pilon:250480..251620+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATACGAACCGTTACGTTTTAGGGAGAAAACGTCGGATTTCTTTGG
AAAGAAAGGGATAAGCTGGCATGGAACGGTTGTGTTTTATATGCCTGCAA
TATATGATGCTAACAACAAATACTCTGGCCCTGATCACCTATCAATGCTT
TTCTACAACCACGTCGTTCAAAGCGACACTCAACAAGATGTGACAGCTGT
AGCATCCATACTAGAAACTGTCATGATGAGGGTTCGAATAGATTTGCCAA
CTTCCACTAAGGTCATCGTGCTGTCAGATAATGCCGCTTGTTACCAGAAT
ACGACTCTTCCAATAATCCTGCCTTTCATTGCCAAGGCGAATGGTCTGGC
ACTTCTCCGATTCATGCACACGGAAACGCAGGACGGAAAGAGTATTGTCG
ACGCTCACTTCGCCATAGCCATGCGTCATGTTTGTCGAATTGTAGCAGAA
GGTAAGGATGTTACGACGCCGACTTCATTAATTGCTGCTCTGCGTGCAGG
TGGAGGTTTAAAGAACTCGGCTGCTGAACTAATTCGCATTGACCGCACAA
ACGAGAATCTGGCTTCATGGGAAGGATTGCGAGGCAAAAACAACAACGGT
TTGCCCTGGATTGGACGGAACAACGAGTATGAATATAGTGGTTGGAGCCA
TGGGGCTCGTAGAGTAAGCGTGAAATGTTTTCGTTATTCTGGGCATGGGT
CTGGTAGGCCTTGTCAGTTCGGCAGAGCAGGCGCTTGTAAACCTGCCAAG
TCTGTAGAGGAAGTTATCAGTTGGAAAGATACCTTGGAGAACACTCAATC
CACAGCGAATACGCGATTGCTGACTGCAGATGGAGAAACGGTTGGAATGG
AGACTGGGCGGCCTGCCCAATTGCTCGAATTGGAGAAAATGATGATGATG
ATTCGGAATCTGACTTTGAATGGAATGGTGGCCTTGAATGCGGAAACTGT
CGAAAGCGATTCACTTCCGAAGGGCGTCTTCTCCAACACAAAAGAAGTTG
TGATGTCTCTTTTGATTCCCCGAGGTGTAAGAGCGCTCTGGGTCGTTGCG
TAG
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protein sequence of Ggra2325.t1

>Ggra2325.t1 ID=Ggra2325.t1|Name=Ggra2325.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MKYEPLRFREKTSDFFGKKGISWHGTVVFYMPAIYDANNKYSGPDHLSML
FYNHVVQSDTQQDVTAVASILETVMMRVRIDLPTSTKVIVLSDNAACYQN
TTLPIILPFIAKANGLALLRFMHTETQDGKSIVDAHFAIAMRHVCRIVAE
GKDVTTPTSLIAALRAGGGLKNSAAELIRIDRTNENLASWEGLRGKNNNG
LPWIGRNNEYEYSGWSHGARRVSVKCFRYSGHGSGRPCQFGRAGACKPAK
SVEEVISWKDTLENTQSTANTRLLTADGETVGMETGRPAQLLELEKMMMM
IRNLTLNGMVALNAETVESDSLPKGVFSNTKEVVMSLLIPRGVRALWVVA
*
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mRNA from alignment at tig00000122_pilon:250480..251620+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2325.t1 ID=Ggra2325.t1|Name=Ggra2325.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1141bp|location=Sequence derived from alignment at tig00000122_pilon:250480..251620+ (Gracilaria gracilis GNS1m male)
ATGAAATACGAACCGTTACGTTTTAGGGAGAAAACGTCGGATTTCTTTGG
AAAGAAAGGGATAAGCTGGCATGGAACGGTTGTGTTTTATATGCCTGCAA
TATATGATGCTAACAACAAATACTCTGGCCCTGATCACCTATCAATGCTT
TTCTACAACCACGTCGTTCAAAGCGACACTCAACAAGATGTGACAGCTGT
AGCATCCATACTAGAAACTGTCATGATGAGGGTTCGAATAGATTTGCCAA
CTTCCACTAAGGTCATCGTGCTGTCAGATAATGCCGCTTGTTACCAGAAT
ACGACTCTTCCAATAATCCTGCCTTTCATTGCCAAGGCGAATGGTCTGGC
ACTTCTCCGATTCATGCACACGGAAACGCAGGACGGAAAGAGTATTGTCG
ACGCTCACTTCGCCATAGCCATGCGTCATGTTTGTCGAATTGTAGCAGAA
GGTAAGGATGTTACGACGCCGACTTCATTAATTGCTGCTCTGCGTGCAGG
TGGAGGTTTAAAGAACTCGGCTGCTGAACTAATTCGCATTGACCGCACAA
ACGAGAATCTGGCTTCATGGGAAGGATTGCGAGGCAAAAACAACAACGGT
TTGCCCTGGATTGGACGGAACAACGAGTATGAATATAGTGGTTGGAGCCA
TGGGGCTCGTAGAGTAAGCGTGAAATGTTTTCGTTATTCTGGGCATGGGT
CTGGTAGGCCTTGTCAGTTCGGCAGAGCAGGCGCTTGTAAACCTGCCAAG
TCTGTAGAGGAAGTTATCAGTTGGAAAGATACCTTGGAGAACACTCAATC
CACAGCGAATACGCGATTGCTGACTGCAGATGGAGAAACGGTTGGAATGG
AGACTGGGGTAAGAGTACTATCTCAATCAGCTGTCAATCGCATTTTGTTG
CGGAGAACGATTCGGGCTGGGACCGAAAAGTCACGATTCTTTACAGCGGC
CTGCCCAATTGCTCGAATTGGAGAAAATGATGATGATGATTCGGAATCTG
ACTTTGAATGGAATGGTGGCCTTGAATGCGGAAACTGTCGAAAGCGATTC
ACTTCCGAAGGGCGTCTTCTCCAACACAAAAGAAGTTGTGATGTCTCTTT
TGATTCCCCGAGGTGTAAGAGCGCTCTGGGTCGTTGCGTAG
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Coding sequence (CDS) from alignment at tig00000122_pilon:250480..251620+

>Ggra2325.t1 ID=Ggra2325.t1|Name=Ggra2325.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000122_pilon:250480..251620+ (Gracilaria gracilis GNS1m male)
ATGAAATACGAACCGTTACGTTTTAGGGAGAAAACGTCGGATTTCTTTGG
AAAGAAAGGGATAAGCTGGCATGGAACGGTTGTGTTTTATATGCCTGCAA
TATATGATGCTAACAACAAATACTCTGGCCCTGATCACCTATCAATGCTT
TTCTACAACCACGTCGTTCAAAGCGACACTCAACAAGATGTGACAGCTGT
AGCATCCATACTAGAAACTGTCATGATGAGGGTTCGAATAGATTTGCCAA
CTTCCACTAAGGTCATCGTGCTGTCAGATAATGCCGCTTGTTACCAGAAT
ACGACTCTTCCAATAATCCTGCCTTTCATTGCCAAGGCGAATGGTCTGGC
ACTTCTCCGATTCATGCACACGGAAACGCAGGACGGAAAGAGTATTGTCG
ACGCTCACTTCGCCATAGCCATGCGTCATGTTTGTCGAATTGTAGCAGAA
GGTAAGGATGTTACGACGCCGACTTCATTAATTGCTGCTCTGCGTGCAGG
TGGAGGTTTAAAGAACTCGGCTGCTGAACTAATTCGCATTGACCGCACAA
ACGAGAATCTGGCTTCATGGGAAGGATTGCGAGGCAAAAACAACAACGGT
TTGCCCTGGATTGGACGGAACAACGAGTATGAATATAGTGGTTGGAGCCA
TGGGGCTCGTAGAGTAAGCGTGAAATGTTTTCGTTATTCTGGGCATGGGT
CTGGTAGGCCTTGTCAGTTCGGCAGAGCAGGCGCTTGTAAACCTGCCAAG
TCTGTAGAGGAAGTTATCAGTTGGAAAGATACCTTGGAGAACACTCAATC
CACAGCGAATACGCGATTGCTGACTGCAGATGGAGAAACGGTTGGAATGG
AGACTGGGCGGCCTGCCCAATTGCTCGAATTGGAGAAAATGATGATGATG
ATTCGGAATCTGACTTTGAATGGAATGGTGGCCTTGAATGCGGAAACTGT
CGAAAGCGATTCACTTCCGAAGGGCGTCTTCTCCAACACAAAAGAAGTTG
TGATGTCTCTTTTGATTCCCCGAGGTGTAAGAGCGCTCTGGGTCGTTGCG
TAG
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