Ggra2320.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2320.t1
Unique NameGgra2320.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:219331..220062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog273371.XP_003869703.1
Preferred nameFKH2
PFAMsFHA,Forkhead
Max annot lvl4751|Fungi
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000086,GO:0000117,GO:0000122,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000902,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001077,GO:0001078,GO:0001085,GO:0001227,GO:0001228,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006275,GO:0006325,GO:0006338,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010570,GO:0010571,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019237,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030174,GO:0030308,GO:0030447,GO:0031123,GO:0031124,GO:0031136,GO:0031137,GO:0031139,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031935,GO:0031936,GO:0031937,GO:0031974,GO:0031981,GO:0032298,GO:0032502,GO:0032505,GO:0032774,GO:0032784,GO:0032785,GO:0032786,GO:0032968,GO:0032989,GO:0032991,GO:0033043,GO:0033044,GO:0033262,GO:0034243,GO:0034244,GO:0034641,GO:0034645,GO:0034654,GO:0040007,GO:0040008,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043900,GO:0043902,GO:0044182,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044798,GO:0044839,GO:0044843,GO:0045165,GO:0045740,GO:0045787,GO:0045815,GO:0045892,GO:0045893,GO:0045926,GO:0045931,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051597,GO:0051716,GO:0051726,GO:0060255,GO:0060258,GO:0060968,GO:0060969,GO:0061186,GO:0065007,GO:0070013,GO:0070784,GO:0070785,GO:0070887,GO:0071310,GO:0071406,GO:0071704,GO:0071840,GO:0071930,GO:0080090,GO:0090054,GO:0090055,GO:0090068,GO:0090282,GO:0090304,GO:0090329,GO:0090419,GO:0090575,GO:0097159,GO:0097221,GO:0097659,GO:0140110,GO:1900237,GO:1900428,GO:1900429,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903047,GO:1903463,GO:1903465,GO:1903466,GO:1903468,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1905269,GO:1990837,GO:2000105,GO:2000112,GO:2000113,GO:2000220,GO:2000221,GO:2000241,GO:2000243,GO:2001141,GO:2001251,GO:2001252
Evalue3.85e-10
EggNOG OGsCOG5025@1|root,KOG2294@2759|Eukaryota,390FB@33154|Opisthokonta,3NTY1@4751|Fungi,3QPDU@4890|Ascomycota,3RSPW@4891|Saccharomycetes,47ASZ@766764|Debaryomycetaceae
DescriptionTranscription factor
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2320Ggra2320Gracilaria gracilis GNS1m malegenetig00000122_pilon 219331..220062 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2320.t1.stop1Ggra2320.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 219331..219333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2320.t1.CDS1Ggra2320.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 219331..220062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2320.t1.exon1Ggra2320.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 219331..220062 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2320.t1.start1Ggra2320.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 220060..220062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2320.t1Ggra2320.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 219331..220062 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2320.t1 ID=Ggra2320.t1|Name=Ggra2320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=244bp
MTETRAYAKLVGKDWEYYMAKPMITLGRGGKGVECDLVLSEASVVSRQHF
TIRYVPELQAFEVKTLSKNGILVNGDFLHKLSPPKLLRSQAEITYGRDDS
MSLSFILPPGDKLSVKKKNNRNISQVPMLQWIGEALLNGNPLNAKQIRER
IETTHPNQLNKLGSESIIASSIRHVLTQNDHIFFAQDSSSIGTKTSHRGD
ASAYENESNDACFSVYDAQKSRFFLETAEHANAEKSNGRAGNA*
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spliced messenger RNA

>Ggra2320.t1 ID=Ggra2320.t1|Name=Ggra2320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000122_pilon:219331..220062- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAAACGCGAGCATATGCGAAGTTGGTTGGGAAGGACTGGGAGTA
CTATATGGCAAAACCAATGATTACACTGGGAAGAGGAGGGAAAGGAGTTG
AATGTGACTTGGTTTTGTCAGAAGCCTCTGTAGTAAGTCGTCAACATTTT
ACAATCCGATATGTTCCCGAACTACAAGCGTTCGAAGTAAAGACGCTGAG
CAAAAATGGGATACTCGTAAACGGCGACTTCTTGCACAAGCTGTCTCCGC
CAAAACTTCTCCGCTCACAAGCTGAAATCACATACGGGCGCGATGATAGC
ATGAGCCTTTCGTTCATCTTGCCACCTGGCGATAAACTGTCTGTAAAGAA
GAAGAATAACAGGAACATTTCTCAGGTTCCGATGTTACAGTGGATCGGCG
AAGCTCTGTTGAACGGTAATCCATTGAACGCAAAACAAATAAGGGAAAGA
ATTGAAACCACGCATCCTAATCAACTGAACAAACTTGGCTCAGAGAGCAT
AATAGCGTCATCCATTCGTCACGTTCTCACTCAAAATGATCACATCTTCT
TTGCTCAGGACTCAAGCTCCATCGGAACAAAAACTTCCCATCGAGGAGAT
GCCAGTGCTTATGAGAATGAAAGCAACGACGCTTGTTTCAGCGTGTACGA
TGCTCAGAAGTCACGGTTCTTTTTGGAAACCGCAGAACATGCAAACGCTG
AGAAAAGTAACGGAAGAGCAGGAAACGCATAG
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protein sequence of Ggra2320.t1

>Ggra2320.t1 ID=Ggra2320.t1|Name=Ggra2320.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MTETRAYAKLVGKDWEYYMAKPMITLGRGGKGVECDLVLSEASVVSRQHF
TIRYVPELQAFEVKTLSKNGILVNGDFLHKLSPPKLLRSQAEITYGRDDS
MSLSFILPPGDKLSVKKKNNRNISQVPMLQWIGEALLNGNPLNAKQIRER
IETTHPNQLNKLGSESIIASSIRHVLTQNDHIFFAQDSSSIGTKTSHRGD
ASAYENESNDACFSVYDAQKSRFFLETAEHANAEKSNGRAGNA*
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mRNA from alignment at tig00000122_pilon:219331..220062-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2320.t1 ID=Ggra2320.t1|Name=Ggra2320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=732bp|location=Sequence derived from alignment at tig00000122_pilon:219331..220062- (Gracilaria gracilis GNS1m male)
ATGACAGAAACGCGAGCATATGCGAAGTTGGTTGGGAAGGACTGGGAGTA
CTATATGGCAAAACCAATGATTACACTGGGAAGAGGAGGGAAAGGAGTTG
AATGTGACTTGGTTTTGTCAGAAGCCTCTGTAGTAAGTCGTCAACATTTT
ACAATCCGATATGTTCCCGAACTACAAGCGTTCGAAGTAAAGACGCTGAG
CAAAAATGGGATACTCGTAAACGGCGACTTCTTGCACAAGCTGTCTCCGC
CAAAACTTCTCCGCTCACAAGCTGAAATCACATACGGGCGCGATGATAGC
ATGAGCCTTTCGTTCATCTTGCCACCTGGCGATAAACTGTCTGTAAAGAA
GAAGAATAACAGGAACATTTCTCAGGTTCCGATGTTACAGTGGATCGGCG
AAGCTCTGTTGAACGGTAATCCATTGAACGCAAAACAAATAAGGGAAAGA
ATTGAAACCACGCATCCTAATCAACTGAACAAACTTGGCTCAGAGAGCAT
AATAGCGTCATCCATTCGTCACGTTCTCACTCAAAATGATCACATCTTCT
TTGCTCAGGACTCAAGCTCCATCGGAACAAAAACTTCCCATCGAGGAGAT
GCCAGTGCTTATGAGAATGAAAGCAACGACGCTTGTTTCAGCGTGTACGA
TGCTCAGAAGTCACGGTTCTTTTTGGAAACCGCAGAACATGCAAACGCTG
AGAAAAGTAACGGAAGAGCAGGAAACGCATAG
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Coding sequence (CDS) from alignment at tig00000122_pilon:219331..220062-

>Ggra2320.t1 ID=Ggra2320.t1|Name=Ggra2320.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=732bp|location=Sequence derived from alignment at tig00000122_pilon:219331..220062- (Gracilaria gracilis GNS1m male)
ATGACAGAAACGCGAGCATATGCGAAGTTGGTTGGGAAGGACTGGGAGTA
CTATATGGCAAAACCAATGATTACACTGGGAAGAGGAGGGAAAGGAGTTG
AATGTGACTTGGTTTTGTCAGAAGCCTCTGTAGTAAGTCGTCAACATTTT
ACAATCCGATATGTTCCCGAACTACAAGCGTTCGAAGTAAAGACGCTGAG
CAAAAATGGGATACTCGTAAACGGCGACTTCTTGCACAAGCTGTCTCCGC
CAAAACTTCTCCGCTCACAAGCTGAAATCACATACGGGCGCGATGATAGC
ATGAGCCTTTCGTTCATCTTGCCACCTGGCGATAAACTGTCTGTAAAGAA
GAAGAATAACAGGAACATTTCTCAGGTTCCGATGTTACAGTGGATCGGCG
AAGCTCTGTTGAACGGTAATCCATTGAACGCAAAACAAATAAGGGAAAGA
ATTGAAACCACGCATCCTAATCAACTGAACAAACTTGGCTCAGAGAGCAT
AATAGCGTCATCCATTCGTCACGTTCTCACTCAAAATGATCACATCTTCT
TTGCTCAGGACTCAAGCTCCATCGGAACAAAAACTTCCCATCGAGGAGAT
GCCAGTGCTTATGAGAATGAAAGCAACGACGCTTGTTTCAGCGTGTACGA
TGCTCAGAAGTCACGGTTCTTTTTGGAAACCGCAGAACATGCAAACGCTG
AGAAAAGTAACGGAAGAGCAGGAAACGCATAG
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