Ggra2319.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2319.t1
Unique NameGgra2319.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:217533..219131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707634.1
PFAMsInositol_P
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K01082,ko:K15422,ko:K21398
KEGG TC2.A.55.2.1,2.A.55.2.2
KEGG ReactionR00188,R00508,R03393,R03427
KEGG Pathwayko00562,ko00920,ko01100,ko01120,ko01130,ko04070,ko04142,ko04216,ko04978,map00562,map00920,map01100,map01120,map01130,map04070,map04142,map04216,map04978
KEGG ModuleM00131
Evalue1.16e-87
EggNOG OGsCOG1218@1|root,KOG1528@2759|Eukaryota
EC3.1.3.57,3.1.3.7
Description3'(2'),5'-bisphosphate nucleotidase activity
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2319Ggra2319Gracilaria gracilis GNS1m malegenetig00000122_pilon 217533..219131 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2319.t1.start1Ggra2319.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 217533..217535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2319.t1.CDS1Ggra2319.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 217533..219131 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2319.t1.exon1Ggra2319.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 217533..219131 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2319.t1.stop1Ggra2319.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 219129..219131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2319.t1Ggra2319.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 217533..219131 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2319.t1 ID=Ggra2319.t1|Name=Ggra2319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=533bp
MLAILACKRRADDASCDLFQWLIAKRHQHTRPRGGEETASRAKRQEHRLQ
LDSAANGSSPPRATGTAKLLSARHSGAQPRPAIDGARAATRVSCPSAHAA
NMALSARVYGAYSRRRFSVASHGASSFVPSGVPLRFVVAFGACTRSLHCL
RRPLSRRQPPSTSRLVERSRCGAAGRPVCSLGNMPDVAASLYEHERSVAL
SAVAHASRLARALQSQFVSDGAMTKKDNSPVTVADFAVQALIVHKLLTAF
PEDKFIAEETTAALVKDPQLRKDVVSATGLTEQQVLAAIDVCSHPGGDGA
RTWILDPIDGTRGFIAMRQYCIALGFIEDGVVKLGVLGCPNLPTNNVQHA
DSNSHIGCLFHATLGGGSWMTSEAVVRSGDASPNSVLQPMAHHECRVSDI
DSPKRSILCESVESLHSSHDLSAQVAAILGVSEPPVRMDSQAKYGCMARG
DFGIFLRFPKPGYVENVWDSAPAAIIVEEAGGRVTDGKGRPLNFSLGRTI
DNEDGIVATNGIVHDLVISAVQQVMSETRKSV*
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spliced messenger RNA

>Ggra2319.t1 ID=Ggra2319.t1|Name=Ggra2319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1599bp|location=Sequence derived from alignment at tig00000122_pilon:217533..219131+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGCTATCCTTGCTTGTAAAAGAAGGGCTGACGATGCAAGTTGCGA
CTTGTTCCAATGGCTTATCGCCAAGCGCCACCAGCACACGCGTCCACGTG
GCGGCGAGGAGACCGCTTCACGCGCGAAGCGGCAAGAGCACCGCCTCCAA
TTAGACTCGGCAGCCAATGGCTCATCGCCACCTCGCGCCACCGGCACCGC
CAAGCTGCTCAGCGCGCGCCACAGCGGCGCGCAACCTCGCCCCGCCATCG
ACGGCGCGCGCGCGGCGACCAGAGTGTCGTGCCCGTCCGCGCACGCCGCA
AACATGGCGCTTTCGGCCCGCGTGTACGGAGCTTACTCGCGTCGCCGGTT
TTCCGTTGCGTCTCATGGCGCTTCTTCGTTTGTGCCATCCGGCGTGCCGT
TGCGTTTCGTCGTCGCCTTTGGCGCTTGTACACGCTCTTTGCATTGCCTC
CGTCGCCCGCTGTCTCGTCGTCAACCCCCGTCAACATCTCGCCTTGTTGA
GCGATCGCGCTGTGGAGCAGCTGGTCGCCCTGTGTGCTCGCTCGGTAACA
TGCCTGATGTGGCCGCGTCGCTCTACGAGCATGAACGGTCTGTAGCGCTT
TCGGCTGTCGCGCACGCCAGTCGTCTTGCTCGCGCGCTGCAGAGCCAATT
TGTATCCGATGGCGCTATGACAAAGAAGGATAACTCGCCCGTCACCGTCG
CCGATTTTGCAGTGCAGGCGCTTATCGTGCATAAATTGCTCACCGCGTTT
CCCGAGGACAAGTTCATTGCTGAGGAGACTACCGCCGCTCTCGTGAAAGA
TCCACAACTGCGGAAAGACGTGGTCAGCGCTACCGGCCTCACTGAACAGC
AAGTTCTTGCTGCTATCGACGTTTGCTCGCATCCTGGCGGCGATGGTGCT
AGGACTTGGATTTTGGACCCCATCGACGGCACGAGGGGTTTTATTGCTAT
GCGACAGTACTGCATTGCGCTTGGCTTTATTGAAGACGGTGTCGTTAAGC
TCGGCGTCTTGGGATGTCCAAATCTTCCCACCAACAATGTTCAACATGCT
GATTCAAACAGTCACATAGGATGCCTGTTTCACGCTACACTTGGCGGCGG
GTCATGGATGACATCGGAAGCAGTTGTGCGCTCAGGAGATGCCTCTCCCA
ACAGCGTACTACAGCCTATGGCTCATCATGAGTGTCGCGTGTCAGACATC
GACAGCCCGAAGCGTAGCATACTATGCGAGTCTGTCGAGTCCCTCCATTC
CTCTCATGATCTCAGCGCTCAGGTGGCTGCAATTCTGGGGGTGAGTGAGC
CACCAGTTCGAATGGATAGCCAAGCAAAGTACGGCTGTATGGCTAGAGGT
GATTTCGGCATCTTTTTGCGCTTTCCCAAGCCAGGCTACGTTGAGAACGT
TTGGGACAGTGCCCCTGCAGCTATCATTGTGGAGGAAGCTGGAGGACGCG
TCACTGATGGAAAAGGTAGGCCTCTCAACTTTTCACTGGGTCGCACGATT
GACAATGAAGATGGAATCGTCGCCACGAACGGCATAGTGCACGATCTGGT
CATCAGTGCCGTTCAACAAGTAATGTCAGAAACCAGAAAATCCGTCTAG
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protein sequence of Ggra2319.t1

>Ggra2319.t1 ID=Ggra2319.t1|Name=Ggra2319.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=533bp
MLAILACKRRADDASCDLFQWLIAKRHQHTRPRGGEETASRAKRQEHRLQ
LDSAANGSSPPRATGTAKLLSARHSGAQPRPAIDGARAATRVSCPSAHAA
NMALSARVYGAYSRRRFSVASHGASSFVPSGVPLRFVVAFGACTRSLHCL
RRPLSRRQPPSTSRLVERSRCGAAGRPVCSLGNMPDVAASLYEHERSVAL
SAVAHASRLARALQSQFVSDGAMTKKDNSPVTVADFAVQALIVHKLLTAF
PEDKFIAEETTAALVKDPQLRKDVVSATGLTEQQVLAAIDVCSHPGGDGA
RTWILDPIDGTRGFIAMRQYCIALGFIEDGVVKLGVLGCPNLPTNNVQHA
DSNSHIGCLFHATLGGGSWMTSEAVVRSGDASPNSVLQPMAHHECRVSDI
DSPKRSILCESVESLHSSHDLSAQVAAILGVSEPPVRMDSQAKYGCMARG
DFGIFLRFPKPGYVENVWDSAPAAIIVEEAGGRVTDGKGRPLNFSLGRTI
DNEDGIVATNGIVHDLVISAVQQVMSETRKSV*
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mRNA from alignment at tig00000122_pilon:217533..219131+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2319.t1 ID=Ggra2319.t1|Name=Ggra2319.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1599bp|location=Sequence derived from alignment at tig00000122_pilon:217533..219131+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTATCCTTGCTTGTAAAAGAAGGGCTGACGATGCAAGTTGCGA
CTTGTTCCAATGGCTTATCGCCAAGCGCCACCAGCACACGCGTCCACGTG
GCGGCGAGGAGACCGCTTCACGCGCGAAGCGGCAAGAGCACCGCCTCCAA
TTAGACTCGGCAGCCAATGGCTCATCGCCACCTCGCGCCACCGGCACCGC
CAAGCTGCTCAGCGCGCGCCACAGCGGCGCGCAACCTCGCCCCGCCATCG
ACGGCGCGCGCGCGGCGACCAGAGTGTCGTGCCCGTCCGCGCACGCCGCA
AACATGGCGCTTTCGGCCCGCGTGTACGGAGCTTACTCGCGTCGCCGGTT
TTCCGTTGCGTCTCATGGCGCTTCTTCGTTTGTGCCATCCGGCGTGCCGT
TGCGTTTCGTCGTCGCCTTTGGCGCTTGTACACGCTCTTTGCATTGCCTC
CGTCGCCCGCTGTCTCGTCGTCAACCCCCGTCAACATCTCGCCTTGTTGA
GCGATCGCGCTGTGGAGCAGCTGGTCGCCCTGTGTGCTCGCTCGGTAACA
TGCCTGATGTGGCCGCGTCGCTCTACGAGCATGAACGGTCTGTAGCGCTT
TCGGCTGTCGCGCACGCCAGTCGTCTTGCTCGCGCGCTGCAGAGCCAATT
TGTATCCGATGGCGCTATGACAAAGAAGGATAACTCGCCCGTCACCGTCG
CCGATTTTGCAGTGCAGGCGCTTATCGTGCATAAATTGCTCACCGCGTTT
CCCGAGGACAAGTTCATTGCTGAGGAGACTACCGCCGCTCTCGTGAAAGA
TCCACAACTGCGGAAAGACGTGGTCAGCGCTACCGGCCTCACTGAACAGC
AAGTTCTTGCTGCTATCGACGTTTGCTCGCATCCTGGCGGCGATGGTGCT
AGGACTTGGATTTTGGACCCCATCGACGGCACGAGGGGTTTTATTGCTAT
GCGACAGTACTGCATTGCGCTTGGCTTTATTGAAGACGGTGTCGTTAAGC
TCGGCGTCTTGGGATGTCCAAATCTTCCCACCAACAATGTTCAACATGCT
GATTCAAACAGTCACATAGGATGCCTGTTTCACGCTACACTTGGCGGCGG
GTCATGGATGACATCGGAAGCAGTTGTGCGCTCAGGAGATGCCTCTCCCA
ACAGCGTACTACAGCCTATGGCTCATCATGAGTGTCGCGTGTCAGACATC
GACAGCCCGAAGCGTAGCATACTATGCGAGTCTGTCGAGTCCCTCCATTC
CTCTCATGATCTCAGCGCTCAGGTGGCTGCAATTCTGGGGGTGAGTGAGC
CACCAGTTCGAATGGATAGCCAAGCAAAGTACGGCTGTATGGCTAGAGGT
GATTTCGGCATCTTTTTGCGCTTTCCCAAGCCAGGCTACGTTGAGAACGT
TTGGGACAGTGCCCCTGCAGCTATCATTGTGGAGGAAGCTGGAGGACGCG
TCACTGATGGAAAAGGTAGGCCTCTCAACTTTTCACTGGGTCGCACGATT
GACAATGAAGATGGAATCGTCGCCACGAACGGCATAGTGCACGATCTGGT
CATCAGTGCCGTTCAACAAGTAATGTCAGAAACCAGAAAATCCGTCTAG
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Coding sequence (CDS) from alignment at tig00000122_pilon:217533..219131+

>Ggra2319.t1 ID=Ggra2319.t1|Name=Ggra2319.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1599bp|location=Sequence derived from alignment at tig00000122_pilon:217533..219131+ (Gracilaria gracilis GNS1m male)
ATGTTGGCTATCCTTGCTTGTAAAAGAAGGGCTGACGATGCAAGTTGCGA
CTTGTTCCAATGGCTTATCGCCAAGCGCCACCAGCACACGCGTCCACGTG
GCGGCGAGGAGACCGCTTCACGCGCGAAGCGGCAAGAGCACCGCCTCCAA
TTAGACTCGGCAGCCAATGGCTCATCGCCACCTCGCGCCACCGGCACCGC
CAAGCTGCTCAGCGCGCGCCACAGCGGCGCGCAACCTCGCCCCGCCATCG
ACGGCGCGCGCGCGGCGACCAGAGTGTCGTGCCCGTCCGCGCACGCCGCA
AACATGGCGCTTTCGGCCCGCGTGTACGGAGCTTACTCGCGTCGCCGGTT
TTCCGTTGCGTCTCATGGCGCTTCTTCGTTTGTGCCATCCGGCGTGCCGT
TGCGTTTCGTCGTCGCCTTTGGCGCTTGTACACGCTCTTTGCATTGCCTC
CGTCGCCCGCTGTCTCGTCGTCAACCCCCGTCAACATCTCGCCTTGTTGA
GCGATCGCGCTGTGGAGCAGCTGGTCGCCCTGTGTGCTCGCTCGGTAACA
TGCCTGATGTGGCCGCGTCGCTCTACGAGCATGAACGGTCTGTAGCGCTT
TCGGCTGTCGCGCACGCCAGTCGTCTTGCTCGCGCGCTGCAGAGCCAATT
TGTATCCGATGGCGCTATGACAAAGAAGGATAACTCGCCCGTCACCGTCG
CCGATTTTGCAGTGCAGGCGCTTATCGTGCATAAATTGCTCACCGCGTTT
CCCGAGGACAAGTTCATTGCTGAGGAGACTACCGCCGCTCTCGTGAAAGA
TCCACAACTGCGGAAAGACGTGGTCAGCGCTACCGGCCTCACTGAACAGC
AAGTTCTTGCTGCTATCGACGTTTGCTCGCATCCTGGCGGCGATGGTGCT
AGGACTTGGATTTTGGACCCCATCGACGGCACGAGGGGTTTTATTGCTAT
GCGACAGTACTGCATTGCGCTTGGCTTTATTGAAGACGGTGTCGTTAAGC
TCGGCGTCTTGGGATGTCCAAATCTTCCCACCAACAATGTTCAACATGCT
GATTCAAACAGTCACATAGGATGCCTGTTTCACGCTACACTTGGCGGCGG
GTCATGGATGACATCGGAAGCAGTTGTGCGCTCAGGAGATGCCTCTCCCA
ACAGCGTACTACAGCCTATGGCTCATCATGAGTGTCGCGTGTCAGACATC
GACAGCCCGAAGCGTAGCATACTATGCGAGTCTGTCGAGTCCCTCCATTC
CTCTCATGATCTCAGCGCTCAGGTGGCTGCAATTCTGGGGGTGAGTGAGC
CACCAGTTCGAATGGATAGCCAAGCAAAGTACGGCTGTATGGCTAGAGGT
GATTTCGGCATCTTTTTGCGCTTTCCCAAGCCAGGCTACGTTGAGAACGT
TTGGGACAGTGCCCCTGCAGCTATCATTGTGGAGGAAGCTGGAGGACGCG
TCACTGATGGAAAAGGTAGGCCTCTCAACTTTTCACTGGGTCGCACGATT
GACAATGAAGATGGAATCGTCGCCACGAACGGCATAGTGCACGATCTGGT
CATCAGTGCCGTTCAACAAGTAATGTCAGAAACCAGAAAATCCGTCTAG
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