Ggra2300.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2300.t1
Unique NameGgra2300.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:64107..66319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2300Ggra2300Gracilaria gracilis GNS1m malegenetig00000122_pilon 64107..66319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2300.t1Ggra2300.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 64107..66319 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2300.t1.stop1Ggra2300.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 64107..64109 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2300.t1.CDS1Ggra2300.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 64107..64214 -
Ggra2300.t1.CDS2Ggra2300.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000122_pilon 65054..65712 -
Ggra2300.t1.CDS3Ggra2300.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000122_pilon 65833..66319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2300.t1.exon1Ggra2300.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 64107..64214 -
Ggra2300.t1.exon2Ggra2300.t1.exon2Gracilaria gracilis GNS1m maleexontig00000122_pilon 65054..65712 -
Ggra2300.t1.exon3Ggra2300.t1.exon3Gracilaria gracilis GNS1m maleexontig00000122_pilon 65833..66319 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2300.t1.intron1Ggra2300.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000122_pilon 64215..65053 -
Ggra2300.t1.intron2Ggra2300.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000122_pilon 65713..65832 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2300.t1.start1Ggra2300.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 66317..66319 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2300.t1 ID=Ggra2300.t1|Name=Ggra2300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=418bp
MGASTSGRPWGGRWSAVNSMWTYIHRLLHLLGIAAVDKEEVDLLSAPLVR
IRCVRRHRKPVVLAHVPCPLFPDEPLGWVPASQLHFSSTLFFLHFDTSDS
QRVDRARIATAAPSDTSPRAWLAVDHKTGIITLTASEVSAAVFQIRLSNT
KAAVPEVFLQCTSQHRDELTPQDFTMAAAYRATRSCPLRIQSKAFDWFIA
SKPGAPLASARGKEAGWDGFILEYDSPTRSARIRDSRGLYLGFTEQLDQL
IAAPDLTGDDAENAVNGAQSRHRAERFDVEIVADDERVTLRSRKGYLSAR
RDGRIVLCQNTIPGRREQFYLRLALPSMMDQSTPRLRLRACDGGARQVEA
SIIVPAPAQIGFDVLRDYEGFHEFIRDASESREFRQDQITVFVFLAVGKE
VPRLYTHGVGHRKPKPL*
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spliced messenger RNA

>Ggra2300.t1 ID=Ggra2300.t1|Name=Ggra2300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000122_pilon:64107..66319- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCTCAACCTCCGGGCGCCCCTGGGGGGGACGTTGGTCTGCTGT
CAACTCCATGTGGACCTACATACATCGTCTCCTCCACCTTCTTGGCATTG
CTGCTGTCGACAAAGAGGAAGTCGACCTCCTTTCAGCCCCCTTAGTCCGA
ATTCGCTGCGTGCGTCGTCATCGCAAACCTGTCGTTCTTGCACACGTTCC
TTGTCCCTTGTTTCCAGACGAGCCTTTAGGCTGGGTACCTGCCTCTCAAC
TGCATTTCTCATCCACCCTATTCTTTCTTCACTTCGACACCTCAGACTCA
CAACGAGTGGATCGAGCCCGTATTGCCACGGCTGCTCCATCTGATACAAG
TCCTCGAGCATGGCTGGCGGTGGACCACAAGACCGGAATCATCACTCTCA
CTGCTTCCGAAGTTTCTGCCGCTGTGTTCCAGATTCGTCTTTCCAACACC
AAAGCGGCTGTTCCGGAGGTGTTCTTGCAGTGTACTTCTCAACACCGTGA
CGAATTAACGCCACAGGACTTCACAATGGCTGCTGCATATCGCGCTACCA
GATCATGCCCCTTGCGTATACAAAGCAAAGCCTTCGATTGGTTTATTGCT
TCAAAGCCTGGGGCACCACTTGCTTCAGCTCGAGGAAAGGAGGCAGGCTG
GGACGGATTTATTCTTGAGTATGACAGTCCAACTCGTTCCGCACGAATTC
GTGACTCGCGTGGCTTGTATCTTGGCTTCACTGAACAGCTTGACCAACTT
ATCGCAGCTCCGGATCTCACTGGCGATGATGCAGAAAATGCGGTGAACGG
AGCACAGTCACGCCATCGAGCTGAGCGTTTTGATGTGGAAATTGTCGCAG
ATGACGAACGTGTCACGCTGAGGTCGCGGAAAGGTTACCTATCAGCTAGA
CGCGATGGCCGAATTGTACTATGTCAAAACACCATACCTGGCAGAAGGGA
ACAATTCTATCTACGACTTGCACTTCCCTCCATGATGGATCAAAGTACTC
CGCGCTTGCGACTGCGCGCCTGTGACGGCGGCGCTCGTCAAGTCGAGGCA
AGCATTATTGTCCCTGCCCCTGCGCAGATTGGCTTCGACGTGTTGCGGGA
CTACGAAGGCTTCCACGAGTTCATACGGGATGCGTCAGAAAGTCGTGAGT
TTCGTCAGGATCAGATTACTGTTTTTGTATTCTTGGCTGTGGGAAAGGAA
GTCCCACGCTTGTATACCCACGGTGTTGGACACCGGAAGCCAAAGCCGCT
ATAA
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protein sequence of Ggra2300.t1

>Ggra2300.t1 ID=Ggra2300.t1|Name=Ggra2300.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=418bp
MGASTSGRPWGGRWSAVNSMWTYIHRLLHLLGIAAVDKEEVDLLSAPLVR
IRCVRRHRKPVVLAHVPCPLFPDEPLGWVPASQLHFSSTLFFLHFDTSDS
QRVDRARIATAAPSDTSPRAWLAVDHKTGIITLTASEVSAAVFQIRLSNT
KAAVPEVFLQCTSQHRDELTPQDFTMAAAYRATRSCPLRIQSKAFDWFIA
SKPGAPLASARGKEAGWDGFILEYDSPTRSARIRDSRGLYLGFTEQLDQL
IAAPDLTGDDAENAVNGAQSRHRAERFDVEIVADDERVTLRSRKGYLSAR
RDGRIVLCQNTIPGRREQFYLRLALPSMMDQSTPRLRLRACDGGARQVEA
SIIVPAPAQIGFDVLRDYEGFHEFIRDASESREFRQDQITVFVFLAVGKE
VPRLYTHGVGHRKPKPL*
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mRNA from alignment at tig00000122_pilon:64107..66319-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2300.t1 ID=Ggra2300.t1|Name=Ggra2300.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2213bp|location=Sequence derived from alignment at tig00000122_pilon:64107..66319- (Gracilaria gracilis GNS1m male)
ATGGGCGCCTCAACCTCCGGGCGCCCCTGGGGGGGACGTTGGTCTGCTGT
CAACTCCATGTGGACCTACATACATCGTCTCCTCCACCTTCTTGGCATTG
CTGCTGTCGACAAAGAGGAAGTCGACCTCCTTTCAGCCCCCTTAGTCCGA
ATTCGCTGCGTGCGTCGTCATCGCAAACCTGTCGTTCTTGCACACGTTCC
TTGTCCCTTGTTTCCAGACGAGCCTTTAGGCTGGGTACCTGCCTCTCAAC
TGCATTTCTCATCCACCCTATTCTTTCTTCACTTCGACACCTCAGACTCA
CAACGAGTGGATCGAGCCCGTATTGCCACGGCTGCTCCATCTGATACAAG
TCCTCGAGCATGGCTGGCGGTGGACCACAAGACCGGAATCATCACTCTCA
CTGCTTCCGAAGTTTCTGCCGCTGTGTTCCAGATTCGTCTTTCCAACACC
AAAGCGGCTGTTCCGGAGGTGTTCTTGCAGTGTACTTGTACGGTGGGCAG
GTACCTGAGCGTTCATCTCGCGACAATGCGTGCACGTGTGTGTGCTAATT
CGGTAGCTTCCTGTGAGACCTTTCTAATCAATCATGTACCTTTGCCTCCA
ACCTTAGCTCAACACCGTGACGAATTAACGCCACAGGACTTCACAATGGC
TGCTGCATATCGCGCTACCAGATCATGCCCCTTGCGTATACAAAGCAAAG
CCTTCGATTGGTTTATTGCTTCAAAGCCTGGGGCACCACTTGCTTCAGCT
CGAGGAAAGGAGGCAGGCTGGGACGGATTTATTCTTGAGTATGACAGTCC
AACTCGTTCCGCACGAATTCGTGACTCGCGTGGCTTGTATCTTGGCTTCA
CTGAACAGCTTGACCAACTTATCGCAGCTCCGGATCTCACTGGCGATGAT
GCAGAAAATGCGGTGAACGGAGCACAGTCACGCCATCGAGCTGAGCGTTT
TGATGTGGAAATTGTCGCAGATGACGAACGTGTCACGCTGAGGTCGCGGA
AAGGTTACCTATCAGCTAGACGCGATGGCCGAATTGTACTATGTCAAAAC
ACCATACCTGGCAGAAGGGAACAATTCTATCTACGACTTGCACTTCCCTC
CATGATGGATCAAAGTACTCCGCGCTTGCGACTGCGCGCCTGTGACGGCG
GCGCTCGTCAAGTCGAGGCAAGCATTATTGTCCCTGCCCCTGCGCAGATT
GGCTTCGACGTGTTGCGGGACTACGAAGGCTTCCACGAGTTCATACGGGA
TGCGTCAGAAAGTCGTGTATTAGAGAGAAGGAGCGACACAGAACTGACAG
TGCTTATGGTACAGTGCCATACGTTCTTGATGTTGACCATTCCAATGACA
ATGGTGCTGGACGTTGTTGAGAGCCCAGAACGCAAGACCGTCGTCATGGA
CTTGAAGAGCGGGCTTGGAATCAAAGAGTACAAGGGTGTATGGCAGGCCG
TGGAAAGGCCAGATGGGCGTTGCTTGTTAAGATGTACGTTGCTTGCAGCT
ACTTCGGTACCAGCACCTGGATTTCTGCTGGATGGCCTCATGTCCAATGC
GATGTACGAAACTATGGAGCAGTTGCGGGTGGAATGTATTCGAAGAACCA
CGAAAGATCATCAAGCGTCCTCCTTGTCCTCTACGCAGAGACGCGTTTGT
GACCGCGCACGACGGCAAGAGACTTCCACCGCAGTGAAAAGCTAGCTATC
TAGACCGTCGTGACGGAACTGCCTCCGGAATGGGCTTCACGTGGCTACAT
CTGTTGGCTACAAGATTTTCAAATACGTTCGTGCCACATACTGTACTGTA
TCCCCAGCCGACGGAAACTAGGGGCAGAGGTTTGCCTGACTGTTGAGCAC
AAGCTAATACAGTACTCCAACTTATATGCAATATCTCGAGAAGTTATGAG
ACTAGGATCCACTAGCCTTCCACGGACTTGTGAAGCTCGTGAAGCTGAAT
GTGGAACTCGATCTTCATACAAAATGAAGAGTCAGGCTCATTCACAAAAA
GAAGCAGAGGAAAATATGTAGTGATCACAGATGATATCTGCCGCGCACAT
GGCTTCCAAGGCGAGGGATGCACTGGCAAAATAGGGCTCTGCGTATTCTG
AACAGGAGTTTCGTCAGGATCAGATTACTGTTTTTGTATTCTTGGCTGTG
GGAAAGGAAGTCCCACGCTTGTATACCCACGGTGTTGGACACCGGAAGCC
AAAGCCGCTATAA
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Coding sequence (CDS) from alignment at tig00000122_pilon:64107..66319-

>Ggra2300.t1 ID=Ggra2300.t1|Name=Ggra2300.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00000122_pilon:64107..66319- (Gracilaria gracilis GNS1m male)
ATGGGCGCCTCAACCTCCGGGCGCCCCTGGGGGGGACGTTGGTCTGCTGT
CAACTCCATGTGGACCTACATACATCGTCTCCTCCACCTTCTTGGCATTG
CTGCTGTCGACAAAGAGGAAGTCGACCTCCTTTCAGCCCCCTTAGTCCGA
ATTCGCTGCGTGCGTCGTCATCGCAAACCTGTCGTTCTTGCACACGTTCC
TTGTCCCTTGTTTCCAGACGAGCCTTTAGGCTGGGTACCTGCCTCTCAAC
TGCATTTCTCATCCACCCTATTCTTTCTTCACTTCGACACCTCAGACTCA
CAACGAGTGGATCGAGCCCGTATTGCCACGGCTGCTCCATCTGATACAAG
TCCTCGAGCATGGCTGGCGGTGGACCACAAGACCGGAATCATCACTCTCA
CTGCTTCCGAAGTTTCTGCCGCTGTGTTCCAGATTCGTCTTTCCAACACC
AAAGCGGCTGTTCCGGAGGTGTTCTTGCAGTGTACTTCTCAACACCGTGA
CGAATTAACGCCACAGGACTTCACAATGGCTGCTGCATATCGCGCTACCA
GATCATGCCCCTTGCGTATACAAAGCAAAGCCTTCGATTGGTTTATTGCT
TCAAAGCCTGGGGCACCACTTGCTTCAGCTCGAGGAAAGGAGGCAGGCTG
GGACGGATTTATTCTTGAGTATGACAGTCCAACTCGTTCCGCACGAATTC
GTGACTCGCGTGGCTTGTATCTTGGCTTCACTGAACAGCTTGACCAACTT
ATCGCAGCTCCGGATCTCACTGGCGATGATGCAGAAAATGCGGTGAACGG
AGCACAGTCACGCCATCGAGCTGAGCGTTTTGATGTGGAAATTGTCGCAG
ATGACGAACGTGTCACGCTGAGGTCGCGGAAAGGTTACCTATCAGCTAGA
CGCGATGGCCGAATTGTACTATGTCAAAACACCATACCTGGCAGAAGGGA
ACAATTCTATCTACGACTTGCACTTCCCTCCATGATGGATCAAAGTACTC
CGCGCTTGCGACTGCGCGCCTGTGACGGCGGCGCTCGTCAAGTCGAGGCA
AGCATTATTGTCCCTGCCCCTGCGCAGATTGGCTTCGACGTGTTGCGGGA
CTACGAAGGCTTCCACGAGTTCATACGGGATGCGTCAGAAAGTCGTGAGT
TTCGTCAGGATCAGATTACTGTTTTTGTATTCTTGGCTGTGGGAAAGGAA
GTCCCACGCTTGTATACCCACGGTGTTGGACACCGGAAGCCAAAGCCGCT
ATAA
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