Ggra2293.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2293.t1
Unique NameGgra2293.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length395
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:46088..47272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708938.1
Preferred namel(2)k09913
PFAMsDUF829
Max annot lvl2759|Eukaryota
KEGG rclassRC00649
KEGG koko:K15891
KEGG ReactionR10412
KEGG Pathwayko00900,ko00909,ko01130,map00900,map00909,map01130
Evalue1.14e-70
EggNOG OGsKOG2521@1|root,KOG2521@2759|Eukaryota
EC1.1.1.354
Descriptiontransmembrane protein 53
COG categoryL
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2293Ggra2293Gracilaria gracilis GNS1m malegenetig00000122_pilon 46088..47272 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2293.t1.stop1Ggra2293.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 46088..46090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2293.t1.CDS1Ggra2293.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 46088..47272 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2293.t1.exon1Ggra2293.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 46088..47272 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2293.t1.start1Ggra2293.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 47270..47272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2293.t1Ggra2293.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 46088..47272 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2293.t1 ID=Ggra2293.t1|Name=Ggra2293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=395bp
MYTQAFVTLPPVNAATARAQLRPSTTSFTAPAQDALLRGRRRARQLMYGA
GGAFRGLASRRQQLERQLMRMSGGAFGGFGSGGFGDGHGRDDHGDENVDP
SWGVAPGAHVLMRERADQAYRMAVVNLLAMSASLSVPRFVDQSVPIVILL
SWMGASKKHMKKYSKFYEDLGYEVTFVCNGLRTAIFPPASKAQAKKIESI
IAQQHPDRPVFVHAFSIGTGIYGLLLDGFRHEKEKLDMITRKVAGVVFDS
GPAPIFPHDVAKGLHTVCPIISRTVWEPIASAFFWVTKARTSFGKSEDAL
RTMQLDTPQLYFYSGDDKVIPDMKNAVEEFMDKNRQRGLEVYNKFWEKSI
HASHLKVHPEEYIANLSSFINRCMELRSIKQERITANGQTVAGL*
back to top

spliced messenger RNA

>Ggra2293.t1 ID=Ggra2293.t1|Name=Ggra2293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000122_pilon:46088..47272- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATACGCAGGCGTTTGTCACGCTTCCGCCCGTCAATGCCGCTACCGC
GCGCGCTCAGTTGAGGCCGTCCACCACCTCCTTCACCGCGCCGGCGCAGG
ATGCGCTTCTGCGGGGGCGTCGTCGCGCTCGACAGCTAATGTACGGTGCC
GGAGGCGCGTTCCGAGGTTTGGCAAGCAGGCGGCAACAATTGGAACGACA
GCTCATGAGGATGAGTGGCGGCGCGTTTGGCGGCTTTGGTTCGGGCGGCT
TCGGCGATGGACATGGTCGCGATGACCATGGCGATGAGAATGTTGACCCG
TCTTGGGGAGTTGCTCCTGGCGCACACGTGCTCATGCGAGAACGCGCTGA
TCAGGCCTATCGTATGGCCGTTGTCAATCTGCTTGCTATGAGCGCTTCTT
TGTCTGTGCCACGCTTTGTGGACCAATCTGTGCCGATCGTCATTCTACTC
AGTTGGATGGGTGCTTCCAAGAAGCATATGAAGAAGTATTCCAAGTTCTA
CGAGGACCTTGGATATGAGGTGACGTTTGTGTGTAATGGACTTCGAACTG
CCATCTTTCCGCCTGCTAGTAAGGCACAAGCGAAGAAGATTGAGAGTATA
ATTGCGCAACAACACCCGGATCGCCCTGTATTCGTGCATGCCTTTTCAAT
TGGAACTGGTATCTATGGACTTCTGCTGGATGGCTTCCGACACGAAAAGG
AGAAACTCGACATGATCACTAGAAAGGTCGCTGGTGTTGTGTTCGACTCG
GGACCAGCTCCTATTTTCCCACATGATGTTGCGAAGGGATTGCACACTGT
ATGTCCGATCATATCCCGTACGGTGTGGGAGCCGATTGCATCAGCGTTCT
TCTGGGTCACCAAAGCTCGGACGTCATTTGGAAAGAGCGAAGATGCGCTT
CGTACCATGCAGTTGGATACACCACAGCTTTACTTCTACTCTGGAGATGA
CAAGGTGATCCCGGATATGAAGAACGCTGTTGAGGAGTTTATGGACAAGA
ATAGACAACGAGGACTGGAGGTATACAACAAATTCTGGGAAAAATCTATC
CATGCGTCGCACTTGAAGGTACATCCAGAAGAATACATTGCCAACCTGTC
TTCGTTTATCAACCGGTGTATGGAGTTACGATCCATAAAGCAAGAGCGAA
TTACCGCCAATGGACAGACAGTAGCCGGGCTCTGA
back to top

protein sequence of Ggra2293.t1

>Ggra2293.t1 ID=Ggra2293.t1|Name=Ggra2293.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=395bp
MYTQAFVTLPPVNAATARAQLRPSTTSFTAPAQDALLRGRRRARQLMYGA
GGAFRGLASRRQQLERQLMRMSGGAFGGFGSGGFGDGHGRDDHGDENVDP
SWGVAPGAHVLMRERADQAYRMAVVNLLAMSASLSVPRFVDQSVPIVILL
SWMGASKKHMKKYSKFYEDLGYEVTFVCNGLRTAIFPPASKAQAKKIESI
IAQQHPDRPVFVHAFSIGTGIYGLLLDGFRHEKEKLDMITRKVAGVVFDS
GPAPIFPHDVAKGLHTVCPIISRTVWEPIASAFFWVTKARTSFGKSEDAL
RTMQLDTPQLYFYSGDDKVIPDMKNAVEEFMDKNRQRGLEVYNKFWEKSI
HASHLKVHPEEYIANLSSFINRCMELRSIKQERITANGQTVAGL*
back to top

mRNA from alignment at tig00000122_pilon:46088..47272-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2293.t1 ID=Ggra2293.t1|Name=Ggra2293.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1185bp|location=Sequence derived from alignment at tig00000122_pilon:46088..47272- (Gracilaria gracilis GNS1m male)
ATGTATACGCAGGCGTTTGTCACGCTTCCGCCCGTCAATGCCGCTACCGC
GCGCGCTCAGTTGAGGCCGTCCACCACCTCCTTCACCGCGCCGGCGCAGG
ATGCGCTTCTGCGGGGGCGTCGTCGCGCTCGACAGCTAATGTACGGTGCC
GGAGGCGCGTTCCGAGGTTTGGCAAGCAGGCGGCAACAATTGGAACGACA
GCTCATGAGGATGAGTGGCGGCGCGTTTGGCGGCTTTGGTTCGGGCGGCT
TCGGCGATGGACATGGTCGCGATGACCATGGCGATGAGAATGTTGACCCG
TCTTGGGGAGTTGCTCCTGGCGCACACGTGCTCATGCGAGAACGCGCTGA
TCAGGCCTATCGTATGGCCGTTGTCAATCTGCTTGCTATGAGCGCTTCTT
TGTCTGTGCCACGCTTTGTGGACCAATCTGTGCCGATCGTCATTCTACTC
AGTTGGATGGGTGCTTCCAAGAAGCATATGAAGAAGTATTCCAAGTTCTA
CGAGGACCTTGGATATGAGGTGACGTTTGTGTGTAATGGACTTCGAACTG
CCATCTTTCCGCCTGCTAGTAAGGCACAAGCGAAGAAGATTGAGAGTATA
ATTGCGCAACAACACCCGGATCGCCCTGTATTCGTGCATGCCTTTTCAAT
TGGAACTGGTATCTATGGACTTCTGCTGGATGGCTTCCGACACGAAAAGG
AGAAACTCGACATGATCACTAGAAAGGTCGCTGGTGTTGTGTTCGACTCG
GGACCAGCTCCTATTTTCCCACATGATGTTGCGAAGGGATTGCACACTGT
ATGTCCGATCATATCCCGTACGGTGTGGGAGCCGATTGCATCAGCGTTCT
TCTGGGTCACCAAAGCTCGGACGTCATTTGGAAAGAGCGAAGATGCGCTT
CGTACCATGCAGTTGGATACACCACAGCTTTACTTCTACTCTGGAGATGA
CAAGGTGATCCCGGATATGAAGAACGCTGTTGAGGAGTTTATGGACAAGA
ATAGACAACGAGGACTGGAGGTATACAACAAATTCTGGGAAAAATCTATC
CATGCGTCGCACTTGAAGGTACATCCAGAAGAATACATTGCCAACCTGTC
TTCGTTTATCAACCGGTGTATGGAGTTACGATCCATAAAGCAAGAGCGAA
TTACCGCCAATGGACAGACAGTAGCCGGGCTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000122_pilon:46088..47272-

>Ggra2293.t1 ID=Ggra2293.t1|Name=Ggra2293.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1185bp|location=Sequence derived from alignment at tig00000122_pilon:46088..47272- (Gracilaria gracilis GNS1m male)
ATGTATACGCAGGCGTTTGTCACGCTTCCGCCCGTCAATGCCGCTACCGC
GCGCGCTCAGTTGAGGCCGTCCACCACCTCCTTCACCGCGCCGGCGCAGG
ATGCGCTTCTGCGGGGGCGTCGTCGCGCTCGACAGCTAATGTACGGTGCC
GGAGGCGCGTTCCGAGGTTTGGCAAGCAGGCGGCAACAATTGGAACGACA
GCTCATGAGGATGAGTGGCGGCGCGTTTGGCGGCTTTGGTTCGGGCGGCT
TCGGCGATGGACATGGTCGCGATGACCATGGCGATGAGAATGTTGACCCG
TCTTGGGGAGTTGCTCCTGGCGCACACGTGCTCATGCGAGAACGCGCTGA
TCAGGCCTATCGTATGGCCGTTGTCAATCTGCTTGCTATGAGCGCTTCTT
TGTCTGTGCCACGCTTTGTGGACCAATCTGTGCCGATCGTCATTCTACTC
AGTTGGATGGGTGCTTCCAAGAAGCATATGAAGAAGTATTCCAAGTTCTA
CGAGGACCTTGGATATGAGGTGACGTTTGTGTGTAATGGACTTCGAACTG
CCATCTTTCCGCCTGCTAGTAAGGCACAAGCGAAGAAGATTGAGAGTATA
ATTGCGCAACAACACCCGGATCGCCCTGTATTCGTGCATGCCTTTTCAAT
TGGAACTGGTATCTATGGACTTCTGCTGGATGGCTTCCGACACGAAAAGG
AGAAACTCGACATGATCACTAGAAAGGTCGCTGGTGTTGTGTTCGACTCG
GGACCAGCTCCTATTTTCCCACATGATGTTGCGAAGGGATTGCACACTGT
ATGTCCGATCATATCCCGTACGGTGTGGGAGCCGATTGCATCAGCGTTCT
TCTGGGTCACCAAAGCTCGGACGTCATTTGGAAAGAGCGAAGATGCGCTT
CGTACCATGCAGTTGGATACACCACAGCTTTACTTCTACTCTGGAGATGA
CAAGGTGATCCCGGATATGAAGAACGCTGTTGAGGAGTTTATGGACAAGA
ATAGACAACGAGGACTGGAGGTATACAACAAATTCTGGGAAAAATCTATC
CATGCGTCGCACTTGAAGGTACATCCAGAAGAATACATTGCCAACCTGTC
TTCGTTTATCAACCGGTGTATGGAGTTACGATCCATAAAGCAAGAGCGAA
TTACCGCCAATGGACAGACAGTAGCCGGGCTCTGA
back to top