Ggra2292.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2292.t1
Unique NameGgra2292.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000122_piloncontigtig00000122_pilon:44894..45500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9258.ENSOANP00000014707
Preferred namePFDN4
PFAMsPrefoldin_2
Max annot lvl33208|Metazoa
KEGG koko:K09550
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006457,GO:0008150,GO:0009987,GO:0016272,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051087
Evalue6.01e-16
EggNOG OGsCOG1382@1|root,KOG1760@2759|Eukaryota,3A07R@33154|Opisthokonta,3BPKT@33208|Metazoa,3D6NQ@33213|Bilateria,48DX9@7711|Chordata,49ASK@7742|Vertebrata,3JGDQ@40674|Mammalia
Descriptionchaperone binding
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2292Ggra2292Gracilaria gracilis GNS1m malegenetig00000122_pilon 44894..45500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2292.t1Ggra2292.t1Gracilaria gracilis GNS1m malepolypeptidetig00000122_pilon 44894..45500 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2292.t1.start1Ggra2292.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000122_pilon 44894..44896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2292.t1.CDS1Ggra2292.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000122_pilon 44894..44952 +
Ggra2292.t1.CDS2Ggra2292.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000122_pilon 45024..45393 +
Ggra2292.t1.CDS3Ggra2292.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000122_pilon 45480..45500 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2292.t1.exon1Ggra2292.t1.exon1Gracilaria gracilis GNS1m maleexontig00000122_pilon 44894..44952 +
Ggra2292.t1.exon2Ggra2292.t1.exon2Gracilaria gracilis GNS1m maleexontig00000122_pilon 45024..45393 +
Ggra2292.t1.exon3Ggra2292.t1.exon3Gracilaria gracilis GNS1m maleexontig00000122_pilon 45480..45500 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2292.t1.intron1Ggra2292.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000122_pilon 44953..45023 +
Ggra2292.t1.intron2Ggra2292.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000122_pilon 45394..45479 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2292.t1.stop1Ggra2292.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000122_pilon 45498..45500 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2292.t1 ID=Ggra2292.t1|Name=Ggra2292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=150bp
MLNIGHRTRMVPLSPQCSTVMELNREDERPNVVMAPADKDNINAFSRYLA
RKTDLKRRITRRKKLIQLHEDASDELLLLDDDAAVHYNIGDVFLLDDNDA
IDQSLQQTISQLNDDIQQYHNELSQIEQSMKQLKAALYAKFGKTINLEE*
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spliced messenger RNA

>Ggra2292.t1 ID=Ggra2292.t1|Name=Ggra2292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00000122_pilon:44894..45500+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAACATAGGACACCGCACCCGTATGGTTCCACTATCGCCGCAGTG
CTCCACCGTCATGGAGCTCAACCGCGAGGATGAGCGACCCAACGTGGTCA
TGGCGCCCGCCGACAAGGATAACATCAACGCCTTTTCTCGTTACTTGGCG
CGCAAGACCGACCTCAAGCGCCGCATCACGCGTCGAAAGAAGTTGATCCA
GCTGCACGAGGATGCGAGCGATGAGCTTCTTCTGCTCGACGATGATGCCG
CCGTACATTACAACATCGGCGACGTCTTTCTTCTGGACGATAACGACGCC
ATCGATCAGTCGCTGCAACAAACCATTTCTCAGCTCAATGACGATATTCA
GCAGTATCACAACGAATTGTCTCAGATCGAGCAGTCTATGAAGCAGCTCA
AAGCCGCGTTATACGCCAAGTTTGGAAAGACTATAAACTTGGAAGAATAG
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protein sequence of Ggra2292.t1

>Ggra2292.t1 ID=Ggra2292.t1|Name=Ggra2292.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=150bp
MLNIGHRTRMVPLSPQCSTVMELNREDERPNVVMAPADKDNINAFSRYLA
RKTDLKRRITRRKKLIQLHEDASDELLLLDDDAAVHYNIGDVFLLDDNDA
IDQSLQQTISQLNDDIQQYHNELSQIEQSMKQLKAALYAKFGKTINLEE*
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mRNA from alignment at tig00000122_pilon:44894..45500+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2292.t1 ID=Ggra2292.t1|Name=Ggra2292.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=607bp|location=Sequence derived from alignment at tig00000122_pilon:44894..45500+ (Gracilaria gracilis GNS1m male)
ATGCTAAACATAGGACACCGCACCCGTATGGTTCCACTATCGCCGCAGTG
CTCCACCGTGTATGTATATCTCTGGTAGCCCTCGTTCGTTCACCTCGTGC
GGCCGATCCCCTCTCTCATTCAATTCGCAGCATGGAGCTCAACCGCGAGG
ATGAGCGACCCAACGTGGTCATGGCGCCCGCCGACAAGGATAACATCAAC
GCCTTTTCTCGTTACTTGGCGCGCAAGACCGACCTCAAGCGCCGCATCAC
GCGTCGAAAGAAGTTGATCCAGCTGCACGAGGATGCGAGCGATGAGCTTC
TTCTGCTCGACGATGATGCCGCCGTACATTACAACATCGGCGACGTCTTT
CTTCTGGACGATAACGACGCCATCGATCAGTCGCTGCAACAAACCATTTC
TCAGCTCAATGACGATATTCAGCAGTATCACAACGAATTGTCTCAGATCG
AGCAGTCTATGAAGCAGCTCAAAGCCGCGTTATACGCCAAGTTTGGAAAG
GTTCGTCCTTCGTCATAACACCGCTGTCGTCGCCGCACGTTTGCAATCCA
CAGTACACTGACCATATCTCTCCTTCTTTACGACAGACTATAAACTTGGA
AGAATAG
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Coding sequence (CDS) from alignment at tig00000122_pilon:44894..45500+

>Ggra2292.t1 ID=Ggra2292.t1|Name=Ggra2292.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=450bp|location=Sequence derived from alignment at tig00000122_pilon:44894..45500+ (Gracilaria gracilis GNS1m male)
ATGCTAAACATAGGACACCGCACCCGTATGGTTCCACTATCGCCGCAGTG
CTCCACCGTCATGGAGCTCAACCGCGAGGATGAGCGACCCAACGTGGTCA
TGGCGCCCGCCGACAAGGATAACATCAACGCCTTTTCTCGTTACTTGGCG
CGCAAGACCGACCTCAAGCGCCGCATCACGCGTCGAAAGAAGTTGATCCA
GCTGCACGAGGATGCGAGCGATGAGCTTCTTCTGCTCGACGATGATGCCG
CCGTACATTACAACATCGGCGACGTCTTTCTTCTGGACGATAACGACGCC
ATCGATCAGTCGCTGCAACAAACCATTTCTCAGCTCAATGACGATATTCA
GCAGTATCACAACGAATTGTCTCAGATCGAGCAGTCTATGAAGCAGCTCA
AAGCCGCGTTATACGCCAAGTTTGGAAAGACTATAAACTTGGAAGAATAG
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