Ggra2287.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2287.t1
Unique NameGgra2287.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length141
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000126_piloncontigtig00000126_pilon:3520..3942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2287Ggra2287Gracilaria gracilis GNS1m malegenetig00000126_pilon 3520..3942 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2287.t1.start1Ggra2287.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000126_pilon 3520..3522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2287.t1.CDS1Ggra2287.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000126_pilon 3520..3942 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2287.t1.exon1Ggra2287.t1.exon1Gracilaria gracilis GNS1m maleexontig00000126_pilon 3520..3942 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2287.t1.stop1Ggra2287.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000126_pilon 3940..3942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2287.t1Ggra2287.t1Gracilaria gracilis GNS1m malepolypeptidetig00000126_pilon 3520..3942 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2287.t1 ID=Ggra2287.t1|Name=Ggra2287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=141bp
MEHRIEICEGQKVHRISDMQAVCVEHEAAATSCFQIVGQVSLNTNLGETS
SMKVSGKTSLGTYRLKQGRGVTRKKEKLLIWQKTTEMTEKRRNTVRNRQE
KEADAGEEDNSLFSSGQNREIKKRNMLNTDAWKAASTDTA*
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spliced messenger RNA

>Ggra2287.t1 ID=Ggra2287.t1|Name=Ggra2287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000126_pilon:3520..3942+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACACCGTATCGAGATCTGTGAAGGGCAGAAAGTACATAGAATAAG
CGACATGCAGGCAGTTTGTGTTGAGCATGAGGCTGCTGCGACAAGTTGTT
TTCAAATTGTTGGCCAAGTCTCGCTAAATACTAATCTGGGTGAGACCTCG
TCAATGAAAGTGTCTGGTAAGACGTCTTTGGGTACATATCGGTTGAAGCA
GGGTCGGGGAGTGACACGAAAGAAGGAGAAGTTGCTGATATGGCAAAAGA
CGACTGAAATGACAGAAAAACGGCGCAATACGGTACGGAATCGGCAAGAA
AAAGAAGCAGATGCTGGAGAAGAAGATAACTCTTTGTTCTCTTCCGGGCA
GAACCGTGAGATTAAGAAGAGGAACATGCTCAATACTGATGCGTGGAAGG
CAGCTTCAACAGATACCGCCTAG
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protein sequence of Ggra2287.t1

>Ggra2287.t1 ID=Ggra2287.t1|Name=Ggra2287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=141bp
MEHRIEICEGQKVHRISDMQAVCVEHEAAATSCFQIVGQVSLNTNLGETS
SMKVSGKTSLGTYRLKQGRGVTRKKEKLLIWQKTTEMTEKRRNTVRNRQE
KEADAGEEDNSLFSSGQNREIKKRNMLNTDAWKAASTDTA*
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mRNA from alignment at tig00000126_pilon:3520..3942+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2287.t1 ID=Ggra2287.t1|Name=Ggra2287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp|location=Sequence derived from alignment at tig00000126_pilon:3520..3942+ (Gracilaria gracilis GNS1m male)
ATGGAACACCGTATCGAGATCTGTGAAGGGCAGAAAGTACATAGAATAAG
CGACATGCAGGCAGTTTGTGTTGAGCATGAGGCTGCTGCGACAAGTTGTT
TTCAAATTGTTGGCCAAGTCTCGCTAAATACTAATCTGGGTGAGACCTCG
TCAATGAAAGTGTCTGGTAAGACGTCTTTGGGTACATATCGGTTGAAGCA
GGGTCGGGGAGTGACACGAAAGAAGGAGAAGTTGCTGATATGGCAAAAGA
CGACTGAAATGACAGAAAAACGGCGCAATACGGTACGGAATCGGCAAGAA
AAAGAAGCAGATGCTGGAGAAGAAGATAACTCTTTGTTCTCTTCCGGGCA
GAACCGTGAGATTAAGAAGAGGAACATGCTCAATACTGATGCGTGGAAGG
CAGCTTCAACAGATACCGCCTAG
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Coding sequence (CDS) from alignment at tig00000126_pilon:3520..3942+

>Ggra2287.t1 ID=Ggra2287.t1|Name=Ggra2287.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=423bp|location=Sequence derived from alignment at tig00000126_pilon:3520..3942+ (Gracilaria gracilis GNS1m male)
ATGGAACACCGTATCGAGATCTGTGAAGGGCAGAAAGTACATAGAATAAG
CGACATGCAGGCAGTTTGTGTTGAGCATGAGGCTGCTGCGACAAGTTGTT
TTCAAATTGTTGGCCAAGTCTCGCTAAATACTAATCTGGGTGAGACCTCG
TCAATGAAAGTGTCTGGTAAGACGTCTTTGGGTACATATCGGTTGAAGCA
GGGTCGGGGAGTGACACGAAAGAAGGAGAAGTTGCTGATATGGCAAAAGA
CGACTGAAATGACAGAAAAACGGCGCAATACGGTACGGAATCGGCAAGAA
AAAGAAGCAGATGCTGGAGAAGAAGATAACTCTTTGTTCTCTTCCGGGCA
GAACCGTGAGATTAAGAAGAGGAACATGCTCAATACTGATGCGTGGAAGG
CAGCTTCAACAGATACCGCCTAG
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