Ggra2283.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2283.t1
Unique NameGgra2283.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:1022203..1029045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2283Ggra2283Gracilaria gracilis GNS1m malegenetig00000900_pilon 1022203..1029045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2283.t1Ggra2283.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 1022203..1029045 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2283.t1.stop1Ggra2283.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 1022203..1022205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2283.t1.CDS1Ggra2283.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 1022203..1022804 -
Ggra2283.t1.CDS2Ggra2283.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 1028649..1029045 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2283.t1.exon1Ggra2283.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 1022203..1022804 -
Ggra2283.t1.exon2Ggra2283.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 1028649..1029045 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2283.t1.intron1Ggra2283.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 1022805..1028648 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2283.t1.start1Ggra2283.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 1029043..1029045 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2283.t1 ID=Ggra2283.t1|Name=Ggra2283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp
MESITAQFNSQPHINDVMDGLVANEKHQSDVFTFLLVHKHFDLKSGEVLY
VERKGQDFDVSVVARETLEGTSPCMWLYSCGWKPFAYSKSAFGYEKVVDM
PKGDYNLGMRWLNNGGVEQTDEANRIQFVSSGRVAHDVCDSMGPSTGEKP
VLHATDRGRDQKATMLNFERMSQGGGFRVTALQLGCCSTPADISEHIGCP
ARGLAPPHLPSPSPWKALSSSVDQPPFPSLVHPTQPSLPMCNQSHPLDLT
WGCRRHLNLHGPLNRKNSHLTTPTAVVTAAITAVSDAAKTAVTCTAATTV
ASRNTDAFVETTAVLAAIIAAASKPQPPSTVL*
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spliced messenger RNA

>Ggra2283.t1 ID=Ggra2283.t1|Name=Ggra2283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00000900_pilon:1022203..1029045- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCTATAACAGCACAATTCAACTCACAACCGCATATCAATGACGT
AATGGATGGACTCGTCGCCAACGAGAAACATCAGAGCGATGTATTTACGT
TTCTGCTGGTGCATAAGCACTTTGATCTCAAATCTGGAGAAGTTTTGTAT
GTAGAGAGGAAAGGACAAGACTTCGATGTTAGCGTTGTGGCTCGTGAAAC
GTTAGAAGGGACTTCCCCATGTATGTGGCTGTATTCATGTGGATGGAAGC
CATTTGCCTATTCCAAATCTGCGTTTGGGTACGAGAAGGTTGTCGACATG
CCGAAAGGGGATTACAACCTCGGGATGCGCTGGCTGAATAATGGTGGCGT
TGAACAGACTGACGAAGCTAATAGAATCCAATTCGTAAGTTCAGGACGTG
TTGCGCATGACGTTTGTGATTCAATGGGACCATCAACTGGAGAAAAACCT
GTGCTACATGCTACAGATAGAGGCAGAGATCAAAAAGCGACGATGCTCAA
CTTCGAGCGTATGTCGCAAGGCGGAGGGTTTAGAGTCACAGCTCTGCAAC
TGGGGTGTTGCAGTACGCCGGCTGACATATCCGAGCACATCGGCTGTCCA
GCAAGAGGACTGGCGCCGCCGCATCTGCCATCTCCGTCGCCATGGAAAGC
TCTGTCGTCTTCTGTAGATCAACCGCCATTTCCATCACTGGTGCATCCCA
CTCAGCCGTCGCTTCCCATGTGTAATCAGTCTCACCCTCTGGACCTCACC
TGGGGCTGCCGTCGCCACCTCAATCTCCATGGACCTCTCAACCGGAAAAA
CAGTCACCTCACAACCCCAACCGCCGTCGTCACTGCGGCCATAACTGCTG
TGTCCGACGCCGCCAAAACCGCAGTCACCTGCACCGCTGCAACCACTGTA
GCCTCCCGAAATACCGATGCCTTCGTCGAAACCACCGCCGTTCTCGCCGC
AATAATCGCCGCGGCATCGAAGCCCCAACCACCGTCGACCGTTCTGTAA
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protein sequence of Ggra2283.t1

>Ggra2283.t1 ID=Ggra2283.t1|Name=Ggra2283.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=333bp
MESITAQFNSQPHINDVMDGLVANEKHQSDVFTFLLVHKHFDLKSGEVLY
VERKGQDFDVSVVARETLEGTSPCMWLYSCGWKPFAYSKSAFGYEKVVDM
PKGDYNLGMRWLNNGGVEQTDEANRIQFVSSGRVAHDVCDSMGPSTGEKP
VLHATDRGRDQKATMLNFERMSQGGGFRVTALQLGCCSTPADISEHIGCP
ARGLAPPHLPSPSPWKALSSSVDQPPFPSLVHPTQPSLPMCNQSHPLDLT
WGCRRHLNLHGPLNRKNSHLTTPTAVVTAAITAVSDAAKTAVTCTAATTV
ASRNTDAFVETTAVLAAIIAAASKPQPPSTVL*
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mRNA from alignment at tig00000900_pilon:1022203..1029045-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2283.t1 ID=Ggra2283.t1|Name=Ggra2283.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=6843bp|location=Sequence derived from alignment at tig00000900_pilon:1022203..1029045- (Gracilaria gracilis GNS1m male)
ATGGAATCTATAACAGCACAATTCAACTCACAACCGCATATCAATGACGT AATGGATGGACTCGTCGCCAACGAGAAACATCAGAGCGATGTATTTACGT TTCTGCTGGTGCATAAGCACTTTGATCTCAAATCTGGAGAAGTTTTGTAT GTAGAGAGGAAAGGACAAGACTTCGATGTTAGCGTTGTGGCTCGTGAAAC GTTAGAAGGGACTTCCCCATGTATGTGGCTGTATTCATGTGGATGGAAGC CATTTGCCTATTCCAAATCTGCGTTTGGGTACGAGAAGGTTGTCGACATG CCGAAAGGGGATTACAACCTCGGGATGCGCTGGCTGAATAATGGTGGCGT TGAACAGACTGACGAAGCTAATAGAATCCAATTCGTAAGTTCAGGACGTA AGTATTCTGTCAAAGGCGATACCGTGACTACTTGTGTGAATTGGGAGGCA CAGAAGAGCGTATGTGTACGGTCACATTGCGAAAAAGATGAAAATGGCCA TATTAGGATTCACACTCGTATTAGGATTCCCTCTGCATCATAGTTATCCC GAGATAATTGTCAAACATTACAGTGACCCGCACGTACTTAAGTAGGCAAC AACCGAGCTCGAGCAGCGAAGTAAAGAATGGCTAGAACCTTCATTCCATA GGTTATGGGCCCCACGCTTTGAAGATCTCCGAACACTCCCGACCCACCCA TGACCCAGGTCGCCTAACAAGCAAAGCACGACGGCAGACCCCAACCCTAG ACAAACTCGCCTACTAGGCCGCGAGCTCAGACGTGATCCATACATAGCCA CCCTCTACCAAAACGCCATTCTCACAGCAACAGACACTCATCAACCTCAG GATACCACCCAAAACCAAGAACATATCCCCTCAAATACTCCTACAAACGC CACAGACGCGACAACCATATCAAATATACATCCAAGCCCTTTCCCAAAAG CCACAACCAACCTACTCATGGATACCGAAAAACTCCACAAAATCCCGGAG CTTGACCGCAGCAACTACGCTCCGTGGTACCTTGCCCTACAGACTTACGC TGCCACAATCAAGGCATTAGAGCACCTTGAAACCAATCCAACAGCACCAA CAGAACCCATGGAACTCGAAACATTCTCCACAAAGAAGAACAAAATTCTC TCCGCAGTTTTAAGCAGCGTCCCATCCAGTATCCTAGGATTGCTAATCGT ACCACAAGACAGACCTACCCCGCATGATCTCGTGCAAAGGATAATACAGC ACATCAACCGCTCAACAAAGGAGGACCACCAAATCCTGAAAACAGAAGCC GAAAGCATCCCCTTCAAGACAGATGGAGATATCGATGAGTTCATCAAAGC ACATACAAACATAAGGCAGAAGATGATAGCAGCACAATATCCAAGTATCA GCGACGAAGAGACAACAGTTGACTTTATTATCACAGGCATCCGCAGAAAC TCCGCCAACAATCCAATTATCGCACATATACTAGCAAACAAGCCATCAAC CATCAAAGAGTTCATCAGGAAATTCAAAGATATCTATCCACTTTACAATC CAGGAAGCCTCACTCCCTCATCTTCAACCGGATACACGAAATTTACCGGG GACTACGGAACTGCAGCTCCTCCTTATCTGAACGTATATGCAAACCAGAC ACCGCATAGTGGCAACCACGCATACCGAAATCGACCCGGCCCATACCGCC GTCCCTCTGGTAGGGGAAATCCTTACAATCGACCGCGAGTACCCCCTAAT CTTTTATGCACATACCACACATCCATTGGTGTCTTCTGCAACCACACAGA TCAGGACTGTAGAGATATGAACCATCCAAAGTTCATGAAAACGCAGGCGA ACTTTGCCCAAGTAACACAGAACTATCCTCCATTCACATATCAAGCACAA ACCCCTCACTCACCAATGCACTATACGCAACAATCCCTCCCCCCCTCCTC CAATCCACTATCACCACCAAGCCCTACCGCCCGCTACAATTCAATACCTG CCAATGCAAGCACCCTTCGCCTCATCACAACAGACACAGCCACCACCACA GCAATCGGGCACGGCCTCAGAAGCCAACACAGAGGTCAATGGTACGTTTA TTCTGGACAGCGGCGCGCATCCGTCCCACATCAGACATCCCACCACAACC ATGACACCACTCCACAACAAAACCCTAACCGAGTCCGCCACTTCACCACC CACCCAGTGCACCCACCATGGAACAATCAGCCTCCGCCTGCAACCGAATA ATAACACCATCCGCACATACGCAGTGGCCAACAAAAGCATCCACCGCCAT CTAATATCAGTCAGAGATCTAGCCACAAGGTATGGACTGGTGACATTCAC AAGCCGAAAAGGAGAAGTATACGACACCAGAGCAAACCCGCCAGCCCTCA TAGCAACAGCACAATGGCGTAACAATCAATACCAGCTGCAAGGCAAATTA GCAAATCACTCGGCTCATACAGCTAGAACGTTCCAATATAAAGCCAAGAA GAACCATCCCAAAACCAAGACACAACACACAAAAACCACAAACCACGTAT CGAAGGCGAAAGAAACAGCTAACAAAGCACCACCGCCAGCCACACTGCCC TCAAGAATTCCGCACACGACTAAGACACTGAGACATCTGACAAACCCCAC CCAATCAGGCAAACAGCATTCCAATACACAAACACTGTACAACTGGCATC TCACATTGAATCACGCGCATCCCAGCAAACTAGCACTCACGGGCTCCCGC AGACTCCTACCGACAATGCCAGCAAACCTACCGACCAACCCCTGCATCTC TTGCAGTTCTTGCAGCACAGGAAAGCTGCACCCTGCTCCACACAAGAGAA CCACCCACAACTACAAACCAGGAGAATACCTCAGTTCAGACACATGCGGA CCAATACACCCAACGTCCAAACACGGCAACAATCACATCCTACTCATCAT ATGTGCAGCCACGAGATTCACAATAGCCCACTTCTTGAAGGACCGAAAGG ACATACCACCTCGAATCCAGCAAACACTCCACCACATACAAAACCACATG CAACTGCCACTCAAACACTTCCGGAGCGACAACGCCAAGGAATATATTTC CAAAGCAATGAAATCAATATACAACAATCACCGGGTCACGCACCATCTGC GCACACCACATCAGCCCCAAGAAAACAGCATAGCCGAACGTTTTAACAGG ACTGTTATGAATGCCGTCAGAGCAATGCTCAATGCCGCCGGATTAGACAA CTCGCATTGGGAAGATGCTGCACGAGACGCCATATACAAGTACAACCTCT TATACCACTCGTCAATCAACACATCCCCGTACTCGCTATGGTATGGCACC ACACCCCCCATACAGAAACTTTACACATTCGGTCAGTTAGGCACCATACC TGTGTATGCCCCAAAGAAGAAATTAGAGTCACGAGCAGATCCAGCTCGAT ATATGTATCCCACATCCCACACCCATATAATGCTTCTGAACATAAGAACT TCGCAATACCAACACATACGGGCCATAGACTTCAAACCATACCACACACA AACGGACCCCACAGTCCAAACCAATTATGCATTCAAAGCACGAACGTCCC ACCAACAACACACCCCCAAATCCATCAATATTGATACCCCACCCCCCAAA CACCTTGCGCAAGCACGATCCTACCCCGACGCCCCAGAATGGAAAAAAGC ACACGATGACGAGCTAGACAACTTGGATAGTCACGACAGCATCAAATGGT TACCCCAGGACTTCATTCCACCACCACAATCCGTCATTCCCCTTATGATG TTATATCGATACAAAAGAGCAGCAGACGGCACAGTGCAACAACGGAAGGC CAGGTGTAATCTGAGAGGCGATATGATGAAACCAGGAATCCACTACGACC CACGACACACAACAACCTACACAGCCGATCGAAGCACGCAACGCCTTCTA CTAGCACTGCATGCCAGTCTTCAACTGCCACTTGAACACTTCGATATCAA ATCCGCATACTTACATGAAAAATATCAGCACAGCCGCCCTGTATATGTCC CGCAAATGCCACGATTCGACGGCACTTACAAACACAAAAGCCAATATGGC CACCTCCACGGCAACCTATATGGCTCCCCTCCCGCGGCATACTACTACAA CCATGGACTCAAGAAGAAACTCACCCAAATGGGGTACACTGCATCAGAAC ATGACCCATGTCTATACACAAAAATCGAACCCGACGACAGCTTCACCATT GTCAGCACCACAATCGACGACTTTCTCGTCCTCGCTTCATCAACAGAACA CATAGACAAACTGTACAACGAACTGTTGGCAAAATACAAAGTCAAACGGC TAGGACTACCAACACGCTTTCTTAACTGGACAATTCATCACGGCGATGAC GGCACGGTACATATTTCGCAACCCGACACCATAGCAGCAGTACTGAAACA AACAGGAATGGAACATTGTAATCCCAGCGCCACACCATACGCCAGCCTAA CGCATATAGACAGAACAAACCATAGCAAACCACTATCACCAGAAGAAGCA ACAGAATACCGCAAAATCCTCGGCGAAATAAGATATGTAACGGACAGCAC ACGGCCAGATCTCACCTATGCAACCAACCGCTTAGCACAACACTCGAATG CTCCTCAAGCGCACCACCAACAAGCACTTAAGACAATTTTTCGTTACCTT CAAGGAACAAGAACGCACGGATTGCTATTTAAGCCTCACATCACCAAGGA ACAGCAGGAAGCAGCAGAGTTGTCAACCTACAGTGACGCCGATTTTGCCA ATTCAACCAACCGCAAGTCCATTACTGGAACAGTTCACACCTATAACGGC ACACCAGTTACATGGTTATCCAAGAAGCAGTCAGTCGTAGCACTTTCAAC AACAGAAGCTGAATATATCGCAGCAACGAACGCAACGAAGCATACAAAAT GGTTACGAAAGTTACTGGAGTCAGCACAAAGAAAAATGATCAGCCCGACG CCTCATCACATGGATAACCGCAGTGCAATCATGATTGCAGAGAATCAGGC ACCGACGAAGCGCAGAAAATACATCGACATCCGTCATCATTATCTTCAAC ATCACATTGCAGAAAAGACGATCCAGCTGCACAGAATGCCCACCCAGGAC ATGCTAGCCGACATGTTAACAAAGCCTCTGCACAGAGATCGCTTTCGATC GCTTAGACAGCGACTCAACATCACGGCCCACCCCAGCGCCAGCTTAAAAT GCAACGCGCCAACCGGGGACTGTCAAACATTTGAGTGAAAGCTTTCTCGC ATTACATTTTTCGCGAATGTCAAACATTACAGTGACCCGCACGTACTTAA GTAGGCAACAACCGAGCTCGAGCAGCGAAGTAAAGAATGGCTAGAACCTT CATTCCATAATAATCATCATTACCTGCCATAAGAACCGCGTAATTTGGCT AGAAACTGCGACAAAATTTATGGCAGTAACTTCTGCTTAGTTCCCATCAA ACAGCCCACGAGCAAGCGAGAACCTTTTCCAGTGCGTGACTCTGTAAGGC TTCGCAAAGCCGAGCAGCCTGACAAAACATTAAGATAATTTTGGTAGCCT TGCTCCATAAGCCCGCAATGACGGCGACGACGGCGACGACGGCGACGACG GCGCGACGGCGACGACGGCGACGACGGCGACGACGGCGACGACAGCAACG ACGCGCGAGTGTGCGGGCACACCCAGCAGCACGTACGCAACGTGTGCAAA GCTTGCCACGCATGCCACGACAAATTACATTGCCGCATAGTAACTCATTG CAGCCGTAATCGTCGTCAACATCGCCGACGCAAACGTCGTTGCCTTCGCC GTCCGAGAGATCGTCTCTGTCTTATCGTAGCACCAAATGTGGTCATAGTG GCCACCATTATCGCCTCGGCTGCAACCCGCCGTAGCGTTGGGCGCGCGTT GCGCTTGGCCACGGCGACGGCGGCAGATGCGGGTGCAGAAGCTGCAAACT AAAAGGACGCCACTTGCACTCCCATCAACGCGGGCGCCGATGCAGACAGC GTGCGGCAAGCACTCTACCCGGAAGCCAGAGTTCGTGTCAATCGGTTCGC ATATGTGTGCAAGCATGCAACCGCCGGCACAGCACGCGCGCCCCTAACGA ACGCCGAGCGGAGTCATTGACTAGCTTATTGTGGCTCACAGTAAAGCAAC GCGCGAGGGTGGTGCTGTGCAAACCTCGTGAGTGCGCTTAGGTGTTGCGC ATGACGTTTGTGATTCAATGGGACCATCAACTGGAGAAAAACCTGTGCTA CATGCTACAGATAGAGGCAGAGATCAAAAAGCGACGATGCTCAACTTCGA GCGTATGTCGCAAGGCGGAGGGTTTAGAGTCACAGCTCTGCAACTGGGGT GTTGCAGTACGCCGGCTGACATATCCGAGCACATCGGCTGTCCAGCAAGA GGACTGGCGCCGCCGCATCTGCCATCTCCGTCGCCATGGAAAGCTCTGTC GTCTTCTGTAGATCAACCGCCATTTCCATCACTGGTGCATCCCACTCAGC CGTCGCTTCCCATGTGTAATCAGTCTCACCCTCTGGACCTCACCTGGGGC TGCCGTCGCCACCTCAATCTCCATGGACCTCTCAACCGGAAAAACAGTCA CCTCACAACCCCAACCGCCGTCGTCACTGCGGCCATAACTGCTGTGTCCG ACGCCGCCAAAACCGCAGTCACCTGCACCGCTGCAACCACTGTAGCCTCC CGAAATACCGATGCCTTCGTCGAAACCACCGCCGTTCTCGCCGCAATAAT CGCCGCGGCATCGAAGCCCCAACCACCGTCGACCGTTCTGTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:1022203..1029045-

>Ggra2283.t1 ID=Ggra2283.t1|Name=Ggra2283.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00000900_pilon:1022203..1029045- (Gracilaria gracilis GNS1m male)
ATGGAATCTATAACAGCACAATTCAACTCACAACCGCATATCAATGACGT
AATGGATGGACTCGTCGCCAACGAGAAACATCAGAGCGATGTATTTACGT
TTCTGCTGGTGCATAAGCACTTTGATCTCAAATCTGGAGAAGTTTTGTAT
GTAGAGAGGAAAGGACAAGACTTCGATGTTAGCGTTGTGGCTCGTGAAAC
GTTAGAAGGGACTTCCCCATGTATGTGGCTGTATTCATGTGGATGGAAGC
CATTTGCCTATTCCAAATCTGCGTTTGGGTACGAGAAGGTTGTCGACATG
CCGAAAGGGGATTACAACCTCGGGATGCGCTGGCTGAATAATGGTGGCGT
TGAACAGACTGACGAAGCTAATAGAATCCAATTCGTAAGTTCAGGACGTG
TTGCGCATGACGTTTGTGATTCAATGGGACCATCAACTGGAGAAAAACCT
GTGCTACATGCTACAGATAGAGGCAGAGATCAAAAAGCGACGATGCTCAA
CTTCGAGCGTATGTCGCAAGGCGGAGGGTTTAGAGTCACAGCTCTGCAAC
TGGGGTGTTGCAGTACGCCGGCTGACATATCCGAGCACATCGGCTGTCCA
GCAAGAGGACTGGCGCCGCCGCATCTGCCATCTCCGTCGCCATGGAAAGC
TCTGTCGTCTTCTGTAGATCAACCGCCATTTCCATCACTGGTGCATCCCA
CTCAGCCGTCGCTTCCCATGTGTAATCAGTCTCACCCTCTGGACCTCACC
TGGGGCTGCCGTCGCCACCTCAATCTCCATGGACCTCTCAACCGGAAAAA
CAGTCACCTCACAACCCCAACCGCCGTCGTCACTGCGGCCATAACTGCTG
TGTCCGACGCCGCCAAAACCGCAGTCACCTGCACCGCTGCAACCACTGTA
GCCTCCCGAAATACCGATGCCTTCGTCGAAACCACCGCCGTTCTCGCCGC
AATAATCGCCGCGGCATCGAAGCCCCAACCACCGTCGACCGTTCTGTAA
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