Ggra2282.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2282.t1
Unique Name	Ggra2282.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:1001991..1003019 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	101852.XP_008077515.1
PFAMs	Kdo,Pkinase
Max annot lvl	4751\|Fungi
Evalue	1.08e-22
EggNOG OGs	2EK1P@1\|root,2SQ23@2759\|Eukaryota,39U6I@33154\|Opisthokonta,3P0ES@4751\|Fungi,3QYUG@4890\|Ascomycota
Description	Protein kinase domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2282	Ggra2282	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 1001991..1003019 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2282.t1.start1	Ggra2282.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 1001991..1001993 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2282.t1.CDS1	Ggra2282.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 1001991..1003019 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2282.t1.exon1	Ggra2282.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 1001991..1003019 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2282.t1.stop1	Ggra2282.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 1003017..1003019 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2282.t1	Ggra2282.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 1001991..1003019 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:1001991..1003019+
coding sequence from alignment at tig00000900_pilon:1001991..1003019+

mRNA sequence

>Ggra2282.t1 ID=Ggra2282.t1|Name=Ggra2282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MSEPKQWIWLYHRQVPQDIPANFWKRDQIFVRKDVFHERAGSLQRYITWA
GIHYVVVVEPNVYCKNCLENTLLENIYKAFEDGNRSTWRERVEFVLDQCL
TGLWSYLEKDRLQRQANGTLMQPIGLLDYDRTEVHKLQLKTIDGTVHAIA
SETNEDAAFQPIENRYPNLRCFPVSDVQVLEVITMFVYRVKIQEHEYCVK
AGQVDLSRSVEKLQKASNVANIVHLEGLVVNKDGKIVGFVTPFVRGKTLH
RLSSATASQKMMWKKQISNAVKSLHKTDIVWGDAKPDNILIGNVNSEPML
IDFEGGSTDSWVDEDLRDTKEGDLQALERILRFIDEKNTSSP*

spliced messenger RNA

>Ggra2282.t1 ID=Ggra2282.t1|Name=Ggra2282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000900_pilon:1001991..1003019+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGAACCAAAGCAATGGATATGGCTTTACCACCGGCAGGTTCCTCA
AGACATTCCCGCCAACTTTTGGAAGCGTGACCAAATCTTTGTGCGTAAAG
ACGTCTTTCACGAACGCGCCGGATCTCTTCAACGGTACATTACTTGGGCC
GGTATTCACTATGTCGTCGTTGTTGAACCAAACGTTTACTGCAAAAACTG
TCTAGAAAACACGCTTCTCGAGAATATATACAAAGCATTTGAGGATGGAA
ATCGAAGCACATGGAGAGAACGTGTAGAGTTCGTGCTAGATCAATGTCTG
ACAGGCCTTTGGTCGTACCTTGAGAAAGATCGTTTACAGCGGCAAGCAAA
CGGCACGCTCATGCAGCCTATTGGACTACTAGACTACGACCGGACAGAAG
TGCACAAACTGCAACTGAAAACAATTGATGGCACCGTGCATGCGATAGCC
AGCGAAACAAATGAAGATGCAGCGTTTCAGCCCATCGAAAACAGATATCC
AAATCTTCGCTGCTTTCCAGTGTCTGATGTTCAAGTGTTGGAAGTGATTA
CTATGTTCGTTTATCGTGTCAAGATTCAGGAGCACGAGTATTGCGTCAAG
GCAGGGCAAGTAGACCTCTCTCGCTCAGTGGAAAAGCTGCAAAAGGCTTC
CAACGTTGCGAATATTGTTCATCTTGAGGGGTTGGTGGTCAATAAAGATG
GCAAGATCGTTGGTTTTGTAACACCCTTTGTTAGAGGAAAGACTCTGCAC
CGCCTCTCGTCGGCTACTGCGTCGCAGAAGATGATGTGGAAGAAACAGAT
ATCAAATGCAGTGAAATCTCTGCACAAGACCGACATCGTGTGGGGAGACG
CTAAGCCGGACAATATTCTTATTGGTAATGTGAACAGCGAACCTATGCTG
ATCGATTTCGAGGGTGGAAGCACAGACAGCTGGGTGGATGAAGATCTAAG
GGACACCAAAGAAGGAGATTTGCAGGCACTTGAACGAATTCTTCGTTTCA
TAGATGAGAAGAACACCTCTAGCCCATAA

protein sequence of Ggra2282.t1

>Ggra2282.t1 ID=Ggra2282.t1|Name=Ggra2282.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MSEPKQWIWLYHRQVPQDIPANFWKRDQIFVRKDVFHERAGSLQRYITWA
GIHYVVVVEPNVYCKNCLENTLLENIYKAFEDGNRSTWRERVEFVLDQCL
TGLWSYLEKDRLQRQANGTLMQPIGLLDYDRTEVHKLQLKTIDGTVHAIA
SETNEDAAFQPIENRYPNLRCFPVSDVQVLEVITMFVYRVKIQEHEYCVK
AGQVDLSRSVEKLQKASNVANIVHLEGLVVNKDGKIVGFVTPFVRGKTLH
RLSSATASQKMMWKKQISNAVKSLHKTDIVWGDAKPDNILIGNVNSEPML
IDFEGGSTDSWVDEDLRDTKEGDLQALERILRFIDEKNTSSP*

mRNA from alignment at tig00000900_pilon:1001991..1003019+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2282.t1 ID=Ggra2282.t1|Name=Ggra2282.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000900_pilon:1001991..1003019+ (Gracilaria gracilis GNS1m male)
ATGAGTGAACCAAAGCAATGGATATGGCTTTACCACCGGCAGGTTCCTCA
AGACATTCCCGCCAACTTTTGGAAGCGTGACCAAATCTTTGTGCGTAAAG
ACGTCTTTCACGAACGCGCCGGATCTCTTCAACGGTACATTACTTGGGCC
GGTATTCACTATGTCGTCGTTGTTGAACCAAACGTTTACTGCAAAAACTG
TCTAGAAAACACGCTTCTCGAGAATATATACAAAGCATTTGAGGATGGAA
ATCGAAGCACATGGAGAGAACGTGTAGAGTTCGTGCTAGATCAATGTCTG
ACAGGCCTTTGGTCGTACCTTGAGAAAGATCGTTTACAGCGGCAAGCAAA
CGGCACGCTCATGCAGCCTATTGGACTACTAGACTACGACCGGACAGAAG
TGCACAAACTGCAACTGAAAACAATTGATGGCACCGTGCATGCGATAGCC
AGCGAAACAAATGAAGATGCAGCGTTTCAGCCCATCGAAAACAGATATCC
AAATCTTCGCTGCTTTCCAGTGTCTGATGTTCAAGTGTTGGAAGTGATTA
CTATGTTCGTTTATCGTGTCAAGATTCAGGAGCACGAGTATTGCGTCAAG
GCAGGGCAAGTAGACCTCTCTCGCTCAGTGGAAAAGCTGCAAAAGGCTTC
CAACGTTGCGAATATTGTTCATCTTGAGGGGTTGGTGGTCAATAAAGATG
GCAAGATCGTTGGTTTTGTAACACCCTTTGTTAGAGGAAAGACTCTGCAC
CGCCTCTCGTCGGCTACTGCGTCGCAGAAGATGATGTGGAAGAAACAGAT
ATCAAATGCAGTGAAATCTCTGCACAAGACCGACATCGTGTGGGGAGACG
CTAAGCCGGACAATATTCTTATTGGTAATGTGAACAGCGAACCTATGCTG
ATCGATTTCGAGGGTGGAAGCACAGACAGCTGGGTGGATGAAGATCTAAG
GGACACCAAAGAAGGAGATTTGCAGGCACTTGAACGAATTCTTCGTTTCA
TAGATGAGAAGAACACCTCTAGCCCATAA

Coding sequence (CDS) from alignment at tig00000900_pilon:1001991..1003019+

>Ggra2282.t1 ID=Ggra2282.t1|Name=Ggra2282.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000900_pilon:1001991..1003019+ (Gracilaria gracilis GNS1m male)
ATGAGTGAACCAAAGCAATGGATATGGCTTTACCACCGGCAGGTTCCTCA
AGACATTCCCGCCAACTTTTGGAAGCGTGACCAAATCTTTGTGCGTAAAG
ACGTCTTTCACGAACGCGCCGGATCTCTTCAACGGTACATTACTTGGGCC
GGTATTCACTATGTCGTCGTTGTTGAACCAAACGTTTACTGCAAAAACTG
TCTAGAAAACACGCTTCTCGAGAATATATACAAAGCATTTGAGGATGGAA
ATCGAAGCACATGGAGAGAACGTGTAGAGTTCGTGCTAGATCAATGTCTG
ACAGGCCTTTGGTCGTACCTTGAGAAAGATCGTTTACAGCGGCAAGCAAA
CGGCACGCTCATGCAGCCTATTGGACTACTAGACTACGACCGGACAGAAG
TGCACAAACTGCAACTGAAAACAATTGATGGCACCGTGCATGCGATAGCC
AGCGAAACAAATGAAGATGCAGCGTTTCAGCCCATCGAAAACAGATATCC
AAATCTTCGCTGCTTTCCAGTGTCTGATGTTCAAGTGTTGGAAGTGATTA
CTATGTTCGTTTATCGTGTCAAGATTCAGGAGCACGAGTATTGCGTCAAG
GCAGGGCAAGTAGACCTCTCTCGCTCAGTGGAAAAGCTGCAAAAGGCTTC
CAACGTTGCGAATATTGTTCATCTTGAGGGGTTGGTGGTCAATAAAGATG
GCAAGATCGTTGGTTTTGTAACACCCTTTGTTAGAGGAAAGACTCTGCAC
CGCCTCTCGTCGGCTACTGCGTCGCAGAAGATGATGTGGAAGAAACAGAT
ATCAAATGCAGTGAAATCTCTGCACAAGACCGACATCGTGTGGGGAGACG
CTAAGCCGGACAATATTCTTATTGGTAATGTGAACAGCGAACCTATGCTG
ATCGATTTCGAGGGTGGAAGCACAGACAGCTGGGTGGATGAAGATCTAAG
GGACACCAAAGAAGGAGATTTGCAGGCACTTGAACGAATTCTTCGTTTCA
TAGATGAGAAGAACACCTCTAGCCCATAA