Ggra2280.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2280.t1
Unique NameGgra2280.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length754
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:997439..1000144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703842.1
PFAMsGlyco_transf_34
Max annot lvl2759|Eukaryota
Evalue8.09e-108
EggNOG OGs2EAHV@1|root,2SGRN@2759|Eukaryota
Descriptiongalactosyl transferase GMA12/MNN10 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2280Ggra2280Gracilaria gracilis GNS1m malegenetig00000900_pilon 997439..1000144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2280.t1Ggra2280.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 997439..1000144 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2280.t1.stop1Ggra2280.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 997439..997441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2280.t1.CDS1Ggra2280.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 997439..998445 -
Ggra2280.t1.CDS2Ggra2280.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 998624..998677 -
Ggra2280.t1.CDS3Ggra2280.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 998803..998833 -
Ggra2280.t1.CDS4Ggra2280.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000900_pilon 998975..1000144 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2280.t1.exon1Ggra2280.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 997439..998445 -
Ggra2280.t1.exon2Ggra2280.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 998624..998677 -
Ggra2280.t1.exon3Ggra2280.t1.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 998803..998833 -
Ggra2280.t1.exon4Ggra2280.t1.exon4Gracilaria gracilis GNS1m maleexontig00000900_pilon 998975..1000144 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2280.t1.intron1Ggra2280.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 998446..998623 -
Ggra2280.t1.intron2Ggra2280.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 998678..998802 -
Ggra2280.t1.intron3Ggra2280.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000900_pilon 998834..998974 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2280.t1.start1Ggra2280.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 1000142..1000144 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2280.t1 ID=Ggra2280.t1|Name=Ggra2280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=754bp
MLSSLKRGGNCTVFLAALLLFTATDVQCFPSHSEKKIALLHLHDNAPFFA
ELGALTLANKQRYATRHDYEMVSHTSSETRGLYRRAKCSDQGAVKRDDLC
YVEDKSFQIDQRAPTFGKIKLALSACVGRKGYWLLWSDADAMIVNQTMPL
THLIDDRYDLAITADWLMINAGVILFKCSKWTVGFLKRVYAAREFDNARA
LDQSAFQHFFDSEADVKQHVKYLPKWTMNVYTEEYRPGDFLLHMAGKLYE
ATVEGALAVAHQFDILSTVDNKDDIEAFFRTQYLFGTYSGQCIQDTDEAR
DSECKPNDDRRRKLKEALILMSSPSRYRHVALRYYWMPDWKDVYDTEDWN
QNSEAFEAQKPLPVERDYDEASELFALGGTLEGIDEEEMNGGFETFVGLN
ASMRRSGVPRPLRACDRVALVALAHAAFTLDDLDASSLTRRQVMGPFCPE
KIEFNTESREIRASDIQMEDKDCEGDGIITIQSFGSSVPDNASTAVKFFS
SRNNDVEGFLVGTLSGGNIVCEAYNLTDGDELIFLKPDEDVEDIEWVDVF
GEETPLSKDDDDDFELDDNERYLIVSNRCFYSETGLTDRVCFPADAQIRL
QDGSVRRMDEVSIGDNVQVSPNSFSPVFAWTHADAHTRYRFVQLVTERGS
ISLTPSHYIYADGVATAAGKVKVGMKLEWRDGSHQTVSEKKYVWKTGLYN
PQTINGDIVVNEFVVTTYTTALEPSMAHALLAPVRAAFMTVNKLFAVSQK
SGL*
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spliced messenger RNA

>Ggra2280.t1 ID=Ggra2280.t1|Name=Ggra2280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2262bp|location=Sequence derived from alignment at tig00000900_pilon:997439..1000144- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCCAGTTTGAAGCGAGGAGGCAATTGCACCGTTTTCCTAGCGGC
GCTCCTGCTGTTCACTGCCACCGACGTGCAATGTTTTCCTTCTCACTCCG
AGAAGAAGATTGCTCTGCTTCACCTTCATGATAATGCACCATTCTTCGCT
GAACTGGGAGCTCTGACTCTGGCCAACAAGCAACGGTATGCCACCCGGCA
TGACTATGAGATGGTTTCACATACTTCGTCTGAAACACGTGGACTGTATC
GACGTGCCAAATGTTCGGATCAGGGCGCCGTGAAGCGGGATGATTTGTGC
TATGTTGAAGACAAGTCGTTTCAAATTGATCAGCGAGCGCCCACTTTTGG
GAAGATCAAGTTGGCGTTGTCCGCATGCGTTGGGAGAAAAGGATATTGGC
TGCTGTGGTCAGATGCGGATGCAATGATTGTGAATCAGACTATGCCTTTG
ACCCACCTGATTGATGATCGATACGATTTGGCTATCACCGCTGACTGGCT
TATGATAAATGCGGGCGTTATACTTTTCAAATGCTCCAAGTGGACTGTAG
GATTTCTCAAGCGCGTTTATGCAGCCAGGGAGTTTGATAATGCCCGCGCA
TTAGATCAAAGCGCTTTTCAACACTTTTTCGACTCGGAAGCTGATGTCAA
ACAGCATGTCAAATACCTTCCGAAGTGGACCATGAACGTTTACACTGAGG
AATACAGACCGGGTGACTTCCTCCTGCATATGGCTGGTAAGCTATACGAA
GCAACTGTAGAAGGAGCGCTAGCCGTTGCACATCAGTTCGACATTCTATC
TACCGTAGACAACAAGGATGACATTGAAGCATTCTTCCGAACTCAATACT
TGTTCGGCACGTACAGTGGTCAATGCATACAGGATACCGACGAAGCAAGG
GATTCAGAATGCAAACCAAACGATGACCGACGCCGCAAGTTGAAGGAGGC
ATTGATTCTGATGTCGTCACCTTCTCGATATCGACATGTGGCGCTCAGGT
ACTATTGGATGCCCGACTGGAAGGATGTGTACGACACGGAAGACTGGAAT
CAAAACAGCGAGGCCTTCGAGGCGCAAAAACCACTGCCAGTGGAACGTGA
CTACGACGAAGCGAGCGAATTGTTCGCCTTAGGCGGCACTCTGGAAGGCA
TTGACGAAGAAGAGATGAACGGTGGATTCGAGACATTCGTGGGGTTAAAC
GCTTCCATGCGTCGGTCTGGTGTCCCACGACCTTTAAGGGCTTGCGATCG
CGTTGCGCTGGTGGCGCTCGCGCACGCTGCTTTCACTTTGGATGATCTTG
ATGCTTCGTCTCTTACCCGTCGTCAGGTTATGGGTCCCTTCTGCCCGGAG
AAGATAGAATTCAACACCGAGTCGCGTGAAATCCGCGCGTCGGACATTCA
GATGGAGGACAAGGACTGTGAAGGTGACGGTATCATAACCATTCAATCAT
TCGGATCTTCCGTTCCCGACAATGCATCCACCGCTGTCAAGTTCTTCTCC
AGTCGCAACAATGACGTAGAAGGCTTTCTCGTCGGAACCCTTAGCGGTGG
GAATATTGTTTGTGAGGCTTACAACCTTACTGATGGCGACGAACTCATCT
TCCTCAAGCCTGATGAGGATGTTGAAGATATTGAATGGGTAGATGTATTT
GGGGAAGAGACACCGCTCTCTAAAGATGATGACGATGACTTTGAATTAGA
TGACAATGAGAGATATCTTATTGTTTCTAATCGCTGCTTCTACTCTGAAA
CGGGACTTACGGATCGCGTGTGCTTCCCGGCTGATGCGCAGATTCGTCTG
CAAGATGGATCTGTGCGCAGAATGGATGAAGTAAGCATCGGTGATAATGT
GCAGGTGTCTCCAAACTCTTTCTCGCCTGTGTTTGCATGGACACATGCTG
ATGCGCACACCAGGTACCGCTTTGTGCAACTTGTGACGGAGCGCGGCTCA
ATCTCCCTAACTCCATCACATTACATCTACGCAGATGGCGTGGCCACTGC
AGCTGGTAAGGTGAAAGTTGGAATGAAGCTTGAATGGAGAGATGGATCGC
ATCAAACTGTTAGTGAGAAGAAGTATGTATGGAAGACTGGGTTGTACAAT
CCACAAACCATTAACGGCGATATCGTGGTGAATGAGTTCGTGGTCACCAC
GTATACGACGGCGTTAGAACCCAGCATGGCGCATGCGCTTCTGGCTCCGG
TACGAGCAGCGTTCATGACGGTGAACAAGTTGTTCGCTGTCTCGCAGAAG
AGCGGGCTGTGA
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protein sequence of Ggra2280.t1

>Ggra2280.t1 ID=Ggra2280.t1|Name=Ggra2280.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=754bp
MLSSLKRGGNCTVFLAALLLFTATDVQCFPSHSEKKIALLHLHDNAPFFA
ELGALTLANKQRYATRHDYEMVSHTSSETRGLYRRAKCSDQGAVKRDDLC
YVEDKSFQIDQRAPTFGKIKLALSACVGRKGYWLLWSDADAMIVNQTMPL
THLIDDRYDLAITADWLMINAGVILFKCSKWTVGFLKRVYAAREFDNARA
LDQSAFQHFFDSEADVKQHVKYLPKWTMNVYTEEYRPGDFLLHMAGKLYE
ATVEGALAVAHQFDILSTVDNKDDIEAFFRTQYLFGTYSGQCIQDTDEAR
DSECKPNDDRRRKLKEALILMSSPSRYRHVALRYYWMPDWKDVYDTEDWN
QNSEAFEAQKPLPVERDYDEASELFALGGTLEGIDEEEMNGGFETFVGLN
ASMRRSGVPRPLRACDRVALVALAHAAFTLDDLDASSLTRRQVMGPFCPE
KIEFNTESREIRASDIQMEDKDCEGDGIITIQSFGSSVPDNASTAVKFFS
SRNNDVEGFLVGTLSGGNIVCEAYNLTDGDELIFLKPDEDVEDIEWVDVF
GEETPLSKDDDDDFELDDNERYLIVSNRCFYSETGLTDRVCFPADAQIRL
QDGSVRRMDEVSIGDNVQVSPNSFSPVFAWTHADAHTRYRFVQLVTERGS
ISLTPSHYIYADGVATAAGKVKVGMKLEWRDGSHQTVSEKKYVWKTGLYN
PQTINGDIVVNEFVVTTYTTALEPSMAHALLAPVRAAFMTVNKLFAVSQK
SGL*
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mRNA from alignment at tig00000900_pilon:997439..1000144-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2280.t1 ID=Ggra2280.t1|Name=Ggra2280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2706bp|location=Sequence derived from alignment at tig00000900_pilon:997439..1000144- (Gracilaria gracilis GNS1m male)
ATGCTCTCCAGTTTGAAGCGAGGAGGCAATTGCACCGTTTTCCTAGCGGC GCTCCTGCTGTTCACTGCCACCGACGTGCAATGTTTTCCTTCTCACTCCG AGAAGAAGATTGCTCTGCTTCACCTTCATGATAATGCACCATTCTTCGCT GAACTGGGAGCTCTGACTCTGGCCAACAAGCAACGGTATGCCACCCGGCA TGACTATGAGATGGTTTCACATACTTCGTCTGAAACACGTGGACTGTATC GACGTGCCAAATGTTCGGATCAGGGCGCCGTGAAGCGGGATGATTTGTGC TATGTTGAAGACAAGTCGTTTCAAATTGATCAGCGAGCGCCCACTTTTGG GAAGATCAAGTTGGCGTTGTCCGCATGCGTTGGGAGAAAAGGATATTGGC TGCTGTGGTCAGATGCGGATGCAATGATTGTGAATCAGACTATGCCTTTG ACCCACCTGATTGATGATCGATACGATTTGGCTATCACCGCTGACTGGCT TATGATAAATGCGGGCGTTATACTTTTCAAATGCTCCAAGTGGACTGTAG GATTTCTCAAGCGCGTTTATGCAGCCAGGGAGTTTGATAATGCCCGCGCA TTAGATCAAAGCGCTTTTCAACACTTTTTCGACTCGGAAGCTGATGTCAA ACAGCATGTCAAATACCTTCCGAAGTGGACCATGAACGTTTACACTGAGG AATACAGACCGGGTGACTTCCTCCTGCATATGGCTGGTAAGCTATACGAA GCAACTGTAGAAGGAGCGCTAGCCGTTGCACATCAGTTCGACATTCTATC TACCGTAGACAACAAGGATGACATTGAAGCATTCTTCCGAACTCAATACT TGTTCGGCACGTACAGTGGTCAATGCATACAGGATACCGACGAAGCAAGG GATTCAGAATGCAAACCAAACGATGACCGACGCCGCAAGTTGAAGGAGGC ATTGATTCTGATGTCGTCACCTTCTCGATATCGACATGTGGCGCTCAGGT ACTATTGGATGCCCGACTGGAAGGATGTGTACGACACGGAAGACTGGAAT CAAAACAGCGAGGCCTTCGAGGCGCAAAAACCACTGCCAGTGGAACGTGA CTACGACGAAGCGAGCGAATTGTTCGCCTTAGGCGGCACTCTGGAAGGCA TTGACGAAGAAGAGATGAACGTTTCTCACGATGAGCTTTGAGTAAACGAA AAATTGTGCAACGTGGCGTGCGAGAGCAATGGTTTGCTTACAAACGGCGC GTCGAACCACGTCATCACAAGCTGCTACCCTTGTACATATGAGCGATCGA CGATCGCCTAGGGTGGATTCGAGACATTCGTGGGGTTAAACGGTACGTTT GAACGATATTGCTTCAAAATCTTCCACTTCCGCGTCTTGTTCAGCCCTAC CTGTACACATGTAACGTCTTCATCTGTTCAACGTTACTTACCTCGCTCCC GCCAACCCCTTCAAAAGCTTCCATGCGTCGGTCTGGTGTCCCACGACCTT TAAGGGCTTGCGATCGCGTTGGTTCGTGTGTGAATGGCTCCGTTGTTGAA GGCGATTGTTTATTGTTCTTCCGCCATCGTAGCTTGTTGCTTTTGTTTTC CCTGACTTCACATTGTTCGCAACGACGGTAAACGTCGATAACGAGACTTG CTAGTTGACGTGCATGAAATGCAGTTCGTTGTGTTTGTGTTCGCGCTAGC GCTGGTGGCGCTCGCGCACGCTGCTTTCACTTTGGATGATCTTGATGCTT CGTCTCTTACCCGTCGTCAGGTTATGGGTCCCTTCTGCCCGGAGAAGATA GAATTCAACACCGAGTCGCGTGAAATCCGCGCGTCGGACATTCAGATGGA GGACAAGGACTGTGAAGGTGACGGTATCATAACCATTCAATCATTCGGAT CTTCCGTTCCCGACAATGCATCCACCGCTGTCAAGTTCTTCTCCAGTCGC AACAATGACGTAGAAGGCTTTCTCGTCGGAACCCTTAGCGGTGGGAATAT TGTTTGTGAGGCTTACAACCTTACTGATGGCGACGAACTCATCTTCCTCA AGCCTGATGAGGATGTTGAAGATATTGAATGGGTAGATGTATTTGGGGAA GAGACACCGCTCTCTAAAGATGATGACGATGACTTTGAATTAGATGACAA TGAGAGATATCTTATTGTTTCTAATCGCTGCTTCTACTCTGAAACGGGAC TTACGGATCGCGTGTGCTTCCCGGCTGATGCGCAGATTCGTCTGCAAGAT GGATCTGTGCGCAGAATGGATGAAGTAAGCATCGGTGATAATGTGCAGGT GTCTCCAAACTCTTTCTCGCCTGTGTTTGCATGGACACATGCTGATGCGC ACACCAGGTACCGCTTTGTGCAACTTGTGACGGAGCGCGGCTCAATCTCC CTAACTCCATCACATTACATCTACGCAGATGGCGTGGCCACTGCAGCTGG TAAGGTGAAAGTTGGAATGAAGCTTGAATGGAGAGATGGATCGCATCAAA CTGTTAGTGAGAAGAAGTATGTATGGAAGACTGGGTTGTACAATCCACAA ACCATTAACGGCGATATCGTGGTGAATGAGTTCGTGGTCACCACGTATAC GACGGCGTTAGAACCCAGCATGGCGCATGCGCTTCTGGCTCCGGTACGAG CAGCGTTCATGACGGTGAACAAGTTGTTCGCTGTCTCGCAGAAGAGCGGG CTGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:997439..1000144-

>Ggra2280.t1 ID=Ggra2280.t1|Name=Ggra2280.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2262bp|location=Sequence derived from alignment at tig00000900_pilon:997439..1000144- (Gracilaria gracilis GNS1m male)
ATGCTCTCCAGTTTGAAGCGAGGAGGCAATTGCACCGTTTTCCTAGCGGC
GCTCCTGCTGTTCACTGCCACCGACGTGCAATGTTTTCCTTCTCACTCCG
AGAAGAAGATTGCTCTGCTTCACCTTCATGATAATGCACCATTCTTCGCT
GAACTGGGAGCTCTGACTCTGGCCAACAAGCAACGGTATGCCACCCGGCA
TGACTATGAGATGGTTTCACATACTTCGTCTGAAACACGTGGACTGTATC
GACGTGCCAAATGTTCGGATCAGGGCGCCGTGAAGCGGGATGATTTGTGC
TATGTTGAAGACAAGTCGTTTCAAATTGATCAGCGAGCGCCCACTTTTGG
GAAGATCAAGTTGGCGTTGTCCGCATGCGTTGGGAGAAAAGGATATTGGC
TGCTGTGGTCAGATGCGGATGCAATGATTGTGAATCAGACTATGCCTTTG
ACCCACCTGATTGATGATCGATACGATTTGGCTATCACCGCTGACTGGCT
TATGATAAATGCGGGCGTTATACTTTTCAAATGCTCCAAGTGGACTGTAG
GATTTCTCAAGCGCGTTTATGCAGCCAGGGAGTTTGATAATGCCCGCGCA
TTAGATCAAAGCGCTTTTCAACACTTTTTCGACTCGGAAGCTGATGTCAA
ACAGCATGTCAAATACCTTCCGAAGTGGACCATGAACGTTTACACTGAGG
AATACAGACCGGGTGACTTCCTCCTGCATATGGCTGGTAAGCTATACGAA
GCAACTGTAGAAGGAGCGCTAGCCGTTGCACATCAGTTCGACATTCTATC
TACCGTAGACAACAAGGATGACATTGAAGCATTCTTCCGAACTCAATACT
TGTTCGGCACGTACAGTGGTCAATGCATACAGGATACCGACGAAGCAAGG
GATTCAGAATGCAAACCAAACGATGACCGACGCCGCAAGTTGAAGGAGGC
ATTGATTCTGATGTCGTCACCTTCTCGATATCGACATGTGGCGCTCAGGT
ACTATTGGATGCCCGACTGGAAGGATGTGTACGACACGGAAGACTGGAAT
CAAAACAGCGAGGCCTTCGAGGCGCAAAAACCACTGCCAGTGGAACGTGA
CTACGACGAAGCGAGCGAATTGTTCGCCTTAGGCGGCACTCTGGAAGGCA
TTGACGAAGAAGAGATGAACGGTGGATTCGAGACATTCGTGGGGTTAAAC
GCTTCCATGCGTCGGTCTGGTGTCCCACGACCTTTAAGGGCTTGCGATCG
CGTTGCGCTGGTGGCGCTCGCGCACGCTGCTTTCACTTTGGATGATCTTG
ATGCTTCGTCTCTTACCCGTCGTCAGGTTATGGGTCCCTTCTGCCCGGAG
AAGATAGAATTCAACACCGAGTCGCGTGAAATCCGCGCGTCGGACATTCA
GATGGAGGACAAGGACTGTGAAGGTGACGGTATCATAACCATTCAATCAT
TCGGATCTTCCGTTCCCGACAATGCATCCACCGCTGTCAAGTTCTTCTCC
AGTCGCAACAATGACGTAGAAGGCTTTCTCGTCGGAACCCTTAGCGGTGG
GAATATTGTTTGTGAGGCTTACAACCTTACTGATGGCGACGAACTCATCT
TCCTCAAGCCTGATGAGGATGTTGAAGATATTGAATGGGTAGATGTATTT
GGGGAAGAGACACCGCTCTCTAAAGATGATGACGATGACTTTGAATTAGA
TGACAATGAGAGATATCTTATTGTTTCTAATCGCTGCTTCTACTCTGAAA
CGGGACTTACGGATCGCGTGTGCTTCCCGGCTGATGCGCAGATTCGTCTG
CAAGATGGATCTGTGCGCAGAATGGATGAAGTAAGCATCGGTGATAATGT
GCAGGTGTCTCCAAACTCTTTCTCGCCTGTGTTTGCATGGACACATGCTG
ATGCGCACACCAGGTACCGCTTTGTGCAACTTGTGACGGAGCGCGGCTCA
ATCTCCCTAACTCCATCACATTACATCTACGCAGATGGCGTGGCCACTGC
AGCTGGTAAGGTGAAAGTTGGAATGAAGCTTGAATGGAGAGATGGATCGC
ATCAAACTGTTAGTGAGAAGAAGTATGTATGGAAGACTGGGTTGTACAAT
CCACAAACCATTAACGGCGATATCGTGGTGAATGAGTTCGTGGTCACCAC
GTATACGACGGCGTTAGAACCCAGCATGGCGCATGCGCTTCTGGCTCCGG
TACGAGCAGCGTTCATGACGGTGAACAAGTTGTTCGCTGTCTCGCAGAAG
AGCGGGCTGTGA
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