Ggra2264.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2264.t1
Unique NameGgra2264.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:954155..954869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2264Ggra2264Gracilaria gracilis GNS1m malegenetig00000900_pilon 954155..954869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2264.t1Ggra2264.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 954155..954869 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2264.t1.start1Ggra2264.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 954155..954157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2264.t1.CDS1Ggra2264.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 954155..954335 +
Ggra2264.t1.CDS2Ggra2264.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 954397..954869 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2264.t1.exon1Ggra2264.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 954155..954335 +
Ggra2264.t1.exon2Ggra2264.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 954397..954869 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2264.t1.intron1Ggra2264.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 954336..954396 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2264.t1.stop1Ggra2264.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 954867..954869 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2264.t1 ID=Ggra2264.t1|Name=Ggra2264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MASAYPTHIEVPVQYTPTAELDHSQLMKLYELSMPAIEDLSWEDVVTNTF
VKLKAYSKVYGARAEGIRLPRCRAEMEIFFTALLHSRYIATSSTPEEVRM
ENRERGLDSKSRIHPDVRELALEDGLAFNLSQRYGIDTIASVVHFASKEG
GKWTDEENALSAALVLEEIANAAERRVSAGNGAADESSSDTRGIMDCLRN
SGPWKGWCGFKSGVHLK*
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spliced messenger RNA

>Ggra2264.t1 ID=Ggra2264.t1|Name=Ggra2264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000900_pilon:954155..954869+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGCTTACCCCACGCACATCGAAGTCCCAGTTCAGTACACTCC
GACTGCTGAGCTTGACCACTCGCAGCTTATGAAACTGTATGAACTCTCGA
TGCCAGCCATCGAAGATCTTTCATGGGAAGACGTTGTGACGAACACTTTT
GTGAAGCTTAAGGCGTATTCAAAAGTATACGGTGCTCGTGCTGAAGGCAT
CCGATTGCCACGATGTCGTGCAGAGATGGAAATATTCTTCACTGCTCTAC
TTCACTCGCGCTATATTGCAACGTCCTCTACTCCCGAGGAAGTGCGGATG
GAGAACCGTGAGCGAGGGCTAGACAGCAAGAGCAGAATTCATCCTGATGT
ACGAGAGTTGGCGCTGGAAGACGGGCTAGCATTTAACTTGTCACAACGAT
ATGGGATAGACACTATCGCATCTGTAGTACATTTCGCATCTAAGGAAGGC
GGGAAATGGACAGATGAGGAAAATGCGCTTTCTGCTGCTTTAGTCTTGGA
AGAAATCGCCAATGCTGCAGAAAGAAGAGTGAGCGCAGGGAATGGTGCTG
CGGATGAAAGTAGTAGTGATACGAGGGGAATAATGGATTGTCTGAGAAAT
AGCGGGCCTTGGAAGGGGTGGTGCGGGTTCAAGAGCGGTGTTCACCTCAA
GTGA
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protein sequence of Ggra2264.t1

>Ggra2264.t1 ID=Ggra2264.t1|Name=Ggra2264.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MASAYPTHIEVPVQYTPTAELDHSQLMKLYELSMPAIEDLSWEDVVTNTF
VKLKAYSKVYGARAEGIRLPRCRAEMEIFFTALLHSRYIATSSTPEEVRM
ENRERGLDSKSRIHPDVRELALEDGLAFNLSQRYGIDTIASVVHFASKEG
GKWTDEENALSAALVLEEIANAAERRVSAGNGAADESSSDTRGIMDCLRN
SGPWKGWCGFKSGVHLK*
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mRNA from alignment at tig00000900_pilon:954155..954869+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2264.t1 ID=Ggra2264.t1|Name=Ggra2264.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=715bp|location=Sequence derived from alignment at tig00000900_pilon:954155..954869+ (Gracilaria gracilis GNS1m male)
ATGGCTTCCGCTTACCCCACGCACATCGAAGTCCCAGTTCAGTACACTCC
GACTGCTGAGCTTGACCACTCGCAGCTTATGAAACTGTATGAACTCTCGA
TGCCAGCCATCGAAGATCTTTCATGGGAAGACGTTGTGACGAACACTTTT
GTGAAGCTTAAGGCGTATTCAAAAGTATACGGTAAGCACAATCTCTAGTC
TACTCGCCGGAGCTACAGCAGTCGCGAACTGACTCGAAACAGGTGCTCGT
GCTGAAGGCATCCGATTGCCACGATGTCGTGCAGAGATGGAAATATTCTT
CACTGCTCTACTTCACTCGCGCTATATTGCAACGTCCTCTACTCCCGAGG
AAGTGCGGATGGAGAACCGTGAGCGAGGGCTAGACAGCAAGAGCAGAATT
CATCCTGATGTACGAGAGTTGGCGCTGGAAGACGGGCTAGCATTTAACTT
GTCACAACGATATGGGATAGACACTATCGCATCTGTAGTACATTTCGCAT
CTAAGGAAGGCGGGAAATGGACAGATGAGGAAAATGCGCTTTCTGCTGCT
TTAGTCTTGGAAGAAATCGCCAATGCTGCAGAAAGAAGAGTGAGCGCAGG
GAATGGTGCTGCGGATGAAAGTAGTAGTGATACGAGGGGAATAATGGATT
GTCTGAGAAATAGCGGGCCTTGGAAGGGGTGGTGCGGGTTCAAGAGCGGT
GTTCACCTCAAGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:954155..954869+

>Ggra2264.t1 ID=Ggra2264.t1|Name=Ggra2264.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000900_pilon:954155..954869+ (Gracilaria gracilis GNS1m male)
ATGGCTTCCGCTTACCCCACGCACATCGAAGTCCCAGTTCAGTACACTCC
GACTGCTGAGCTTGACCACTCGCAGCTTATGAAACTGTATGAACTCTCGA
TGCCAGCCATCGAAGATCTTTCATGGGAAGACGTTGTGACGAACACTTTT
GTGAAGCTTAAGGCGTATTCAAAAGTATACGGTGCTCGTGCTGAAGGCAT
CCGATTGCCACGATGTCGTGCAGAGATGGAAATATTCTTCACTGCTCTAC
TTCACTCGCGCTATATTGCAACGTCCTCTACTCCCGAGGAAGTGCGGATG
GAGAACCGTGAGCGAGGGCTAGACAGCAAGAGCAGAATTCATCCTGATGT
ACGAGAGTTGGCGCTGGAAGACGGGCTAGCATTTAACTTGTCACAACGAT
ATGGGATAGACACTATCGCATCTGTAGTACATTTCGCATCTAAGGAAGGC
GGGAAATGGACAGATGAGGAAAATGCGCTTTCTGCTGCTTTAGTCTTGGA
AGAAATCGCCAATGCTGCAGAAAGAAGAGTGAGCGCAGGGAATGGTGCTG
CGGATGAAAGTAGTAGTGATACGAGGGGAATAATGGATTGTCTGAGAAAT
AGCGGGCCTTGGAAGGGGTGGTGCGGGTTCAAGAGCGGTGTTCACCTCAA
GTGA
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