Ggra2256.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2256.t1
Unique NameGgra2256.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:936704..937449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2256Ggra2256Gracilaria gracilis GNS1m malegenetig00000900_pilon 936704..937449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2256.t1Ggra2256.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 936704..937449 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2256.t1.start1Ggra2256.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 936704..936706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2256.t1.CDS1Ggra2256.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 936704..936779 +
Ggra2256.t1.CDS2Ggra2256.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 936842..937449 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2256.t1.exon1Ggra2256.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 936704..936779 +
Ggra2256.t1.exon2Ggra2256.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 936842..937449 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2256.t1.intron1Ggra2256.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 936780..936841 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2256.t1.stop1Ggra2256.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 937447..937449 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2256.t1 ID=Ggra2256.t1|Name=Ggra2256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MEHAGTAHGLRVKRILRAIPGQLGIDVSEQYSLEHEDPFNCVWHGRGNEL
VIDMKYIPPRGSWTRNGSGLEWKREKLSGIDKPGSGEMCFDFKIPKNGSY
YFTGLTSAPHPTDHNDMWVKLSSGIRLYRGSTHFYRYTTRKYIKAYQNMG
QNQINNILSSVDHDPHYFISEKMYTNETHTVCISGRSSKFTVIKLVFARC
WLGNGSCNRWDTWIKTSVKYLIEPICE*
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spliced messenger RNA

>Ggra2256.t1 ID=Ggra2256.t1|Name=Ggra2256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000900_pilon:936704..937449+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCATGCAGGTACTGCTCATGGCCTTCGAGTCAAGCGGATCCTGCG
TGCTATACCTGGGCAATTAGGCATTGATGTGTCGGAGCAATACTCGCTTG
AACATGAAGACCCTTTCAATTGTGTCTGGCATGGAAGGGGAAACGAGCTG
GTAATTGACATGAAGTATATCCCGCCTCGAGGGTCGTGGACTCGCAATGG
TTCTGGTTTAGAGTGGAAAAGAGAGAAACTTTCAGGAATAGACAAGCCGG
GAAGTGGTGAGATGTGTTTTGACTTCAAGATTCCGAAGAATGGTAGCTAC
TACTTCACCGGACTCACCTCCGCTCCGCATCCCACTGATCACAATGATAT
GTGGGTGAAGCTTTCATCTGGTATCCGTCTATACAGGGGAAGCACACATT
TTTATAGGTATACGACGAGGAAGTACATAAAGGCATACCAGAATATGGGA
CAAAACCAGATCAACAACATTCTGTCCTCTGTGGACCACGATCCGCACTA
TTTCATATCAGAGAAGATGTACACCAACGAAACTCATACAGTTTGTATCT
CAGGTCGAAGCTCAAAGTTTACGGTTATCAAACTTGTTTTCGCTAGATGT
TGGCTTGGAAATGGGTCTTGCAACAGATGGGATACTTGGATCAAAACGTC
CGTGAAATACTTGATTGAACCCATCTGCGAGTGA
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protein sequence of Ggra2256.t1

>Ggra2256.t1 ID=Ggra2256.t1|Name=Ggra2256.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MEHAGTAHGLRVKRILRAIPGQLGIDVSEQYSLEHEDPFNCVWHGRGNEL
VIDMKYIPPRGSWTRNGSGLEWKREKLSGIDKPGSGEMCFDFKIPKNGSY
YFTGLTSAPHPTDHNDMWVKLSSGIRLYRGSTHFYRYTTRKYIKAYQNMG
QNQINNILSSVDHDPHYFISEKMYTNETHTVCISGRSSKFTVIKLVFARC
WLGNGSCNRWDTWIKTSVKYLIEPICE*
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mRNA from alignment at tig00000900_pilon:936704..937449+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2256.t1 ID=Ggra2256.t1|Name=Ggra2256.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=746bp|location=Sequence derived from alignment at tig00000900_pilon:936704..937449+ (Gracilaria gracilis GNS1m male)
ATGGAGCATGCAGGTACTGCTCATGGCCTTCGAGTCAAGCGGATCCTGCG
TGCTATACCTGGGCAATTAGGCATTGGTGCGCGTCTTTTTTTCAGACTCT
CCAGGCTCAGCCATCTGCAACACCCTCTACATCTCCAGATGTGTCGGAGC
AATACTCGCTTGAACATGAAGACCCTTTCAATTGTGTCTGGCATGGAAGG
GGAAACGAGCTGGTAATTGACATGAAGTATATCCCGCCTCGAGGGTCGTG
GACTCGCAATGGTTCTGGTTTAGAGTGGAAAAGAGAGAAACTTTCAGGAA
TAGACAAGCCGGGAAGTGGTGAGATGTGTTTTGACTTCAAGATTCCGAAG
AATGGTAGCTACTACTTCACCGGACTCACCTCCGCTCCGCATCCCACTGA
TCACAATGATATGTGGGTGAAGCTTTCATCTGGTATCCGTCTATACAGGG
GAAGCACACATTTTTATAGGTATACGACGAGGAAGTACATAAAGGCATAC
CAGAATATGGGACAAAACCAGATCAACAACATTCTGTCCTCTGTGGACCA
CGATCCGCACTATTTCATATCAGAGAAGATGTACACCAACGAAACTCATA
CAGTTTGTATCTCAGGTCGAAGCTCAAAGTTTACGGTTATCAAACTTGTT
TTCGCTAGATGTTGGCTTGGAAATGGGTCTTGCAACAGATGGGATACTTG
GATCAAAACGTCCGTGAAATACTTGATTGAACCCATCTGCGAGTGA
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Coding sequence (CDS) from alignment at tig00000900_pilon:936704..937449+

>Ggra2256.t1 ID=Ggra2256.t1|Name=Ggra2256.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000900_pilon:936704..937449+ (Gracilaria gracilis GNS1m male)
ATGGAGCATGCAGGTACTGCTCATGGCCTTCGAGTCAAGCGGATCCTGCG
TGCTATACCTGGGCAATTAGGCATTGATGTGTCGGAGCAATACTCGCTTG
AACATGAAGACCCTTTCAATTGTGTCTGGCATGGAAGGGGAAACGAGCTG
GTAATTGACATGAAGTATATCCCGCCTCGAGGGTCGTGGACTCGCAATGG
TTCTGGTTTAGAGTGGAAAAGAGAGAAACTTTCAGGAATAGACAAGCCGG
GAAGTGGTGAGATGTGTTTTGACTTCAAGATTCCGAAGAATGGTAGCTAC
TACTTCACCGGACTCACCTCCGCTCCGCATCCCACTGATCACAATGATAT
GTGGGTGAAGCTTTCATCTGGTATCCGTCTATACAGGGGAAGCACACATT
TTTATAGGTATACGACGAGGAAGTACATAAAGGCATACCAGAATATGGGA
CAAAACCAGATCAACAACATTCTGTCCTCTGTGGACCACGATCCGCACTA
TTTCATATCAGAGAAGATGTACACCAACGAAACTCATACAGTTTGTATCT
CAGGTCGAAGCTCAAAGTTTACGGTTATCAAACTTGTTTTCGCTAGATGT
TGGCTTGGAAATGGGTCTTGCAACAGATGGGATACTTGGATCAAAACGTC
CGTGAAATACTTGATTGAACCCATCTGCGAGTGA
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