Ggra2252.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2252.t1
Unique NameGgra2252.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:914173..914649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2252Ggra2252Gracilaria gracilis GNS1m malegenetig00000900_pilon 914173..914649 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2252.t1.start1Ggra2252.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 914173..914175 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2252.t1.CDS1Ggra2252.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 914173..914649 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2252.t1.exon1Ggra2252.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 914173..914649 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2252.t1.stop1Ggra2252.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 914647..914649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2252.t1Ggra2252.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 914173..914649 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2252.t1 ID=Ggra2252.t1|Name=Ggra2252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MEDASHATAAATSQFPRWRFPEELLDLTPENYKQWLQNLKDILTEHEYEN
LLEEGFTPTTPDDKKAVASLRRIITKNVTSATADLLANPDIFQETPAKIA
QAITDTVESQSMKDYFSLTTKAMNLRRTGSIADYIAQHMKIRRKQIIAGT
PGTQDERT*
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spliced messenger RNA

>Ggra2252.t1 ID=Ggra2252.t1|Name=Ggra2252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000900_pilon:914173..914649+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACGCATCCCATGCCACAGCCGCAGCCACTTCACAATTTCCACG
CTGGAGATTCCCCGAAGAGCTGCTTGACCTCACACCAGAAAACTACAAGC
AGTGGCTCCAAAATCTGAAAGACATCCTAACGGAACATGAATATGAAAAC
CTTCTTGAGGAAGGTTTCACTCCGACCACGCCCGATGACAAGAAAGCAGT
GGCCAGCCTACGTCGAATAATCACAAAAAACGTTACCAGCGCCACTGCTG
ACTTACTGGCCAACCCGGATATCTTCCAGGAAACACCAGCGAAGATCGCT
CAAGCCATTACTGACACCGTAGAATCCCAGTCAATGAAGGACTACTTCAG
CCTCACAACAAAGGCTATGAATTTGCGACGCACAGGCTCTATTGCCGACT
ACATCGCTCAACATATGAAAATCAGACGCAAGCAGATCATCGCTGGCACC
CCGGGAACACAAGATGAACGTACCTAG
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protein sequence of Ggra2252.t1

>Ggra2252.t1 ID=Ggra2252.t1|Name=Ggra2252.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MEDASHATAAATSQFPRWRFPEELLDLTPENYKQWLQNLKDILTEHEYEN
LLEEGFTPTTPDDKKAVASLRRIITKNVTSATADLLANPDIFQETPAKIA
QAITDTVESQSMKDYFSLTTKAMNLRRTGSIADYIAQHMKIRRKQIIAGT
PGTQDERT*
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mRNA from alignment at tig00000900_pilon:914173..914649+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2252.t1 ID=Ggra2252.t1|Name=Ggra2252.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000900_pilon:914173..914649+ (Gracilaria gracilis GNS1m male)
ATGGAAGACGCATCCCATGCCACAGCCGCAGCCACTTCACAATTTCCACG
CTGGAGATTCCCCGAAGAGCTGCTTGACCTCACACCAGAAAACTACAAGC
AGTGGCTCCAAAATCTGAAAGACATCCTAACGGAACATGAATATGAAAAC
CTTCTTGAGGAAGGTTTCACTCCGACCACGCCCGATGACAAGAAAGCAGT
GGCCAGCCTACGTCGAATAATCACAAAAAACGTTACCAGCGCCACTGCTG
ACTTACTGGCCAACCCGGATATCTTCCAGGAAACACCAGCGAAGATCGCT
CAAGCCATTACTGACACCGTAGAATCCCAGTCAATGAAGGACTACTTCAG
CCTCACAACAAAGGCTATGAATTTGCGACGCACAGGCTCTATTGCCGACT
ACATCGCTCAACATATGAAAATCAGACGCAAGCAGATCATCGCTGGCACC
CCGGGAACACAAGATGAACGTACCTAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:914173..914649+

>Ggra2252.t1 ID=Ggra2252.t1|Name=Ggra2252.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000900_pilon:914173..914649+ (Gracilaria gracilis GNS1m male)
ATGGAAGACGCATCCCATGCCACAGCCGCAGCCACTTCACAATTTCCACG
CTGGAGATTCCCCGAAGAGCTGCTTGACCTCACACCAGAAAACTACAAGC
AGTGGCTCCAAAATCTGAAAGACATCCTAACGGAACATGAATATGAAAAC
CTTCTTGAGGAAGGTTTCACTCCGACCACGCCCGATGACAAGAAAGCAGT
GGCCAGCCTACGTCGAATAATCACAAAAAACGTTACCAGCGCCACTGCTG
ACTTACTGGCCAACCCGGATATCTTCCAGGAAACACCAGCGAAGATCGCT
CAAGCCATTACTGACACCGTAGAATCCCAGTCAATGAAGGACTACTTCAG
CCTCACAACAAAGGCTATGAATTTGCGACGCACAGGCTCTATTGCCGACT
ACATCGCTCAACATATGAAAATCAGACGCAAGCAGATCATCGCTGGCACC
CCGGGAACACAAGATGAACGTACCTAG
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