Ggra2241.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2241.t1
Unique NameGgra2241.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:824126..825304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog864702.OsccyDRAFT_3646
PFAMsMethyltransf_21
Max annot lvl1117|Cyanobacteria
Evalue5.35e-22
EggNOG OGs28NYT@1|root,2ZBVV@2|Bacteria,1G71A@1117|Cyanobacteria,1HF2T@1150|Oscillatoriales
DescriptionMethyltransferase FkbM domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2241Ggra2241Gracilaria gracilis GNS1m malegenetig00000900_pilon 824126..825304 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2241.t1.start1Ggra2241.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 824126..824128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2241.t1.CDS1Ggra2241.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 824126..825304 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2241.t1.exon1Ggra2241.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 824126..825304 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2241.t1.stop1Ggra2241.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 825302..825304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2241.t1Ggra2241.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 824126..825304 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2241.t1 ID=Ggra2241.t1|Name=Ggra2241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MTLDSLYAPSATGVFQKALRPTIRRERLVGITAFVAGFLVCHLFLTSGSA
IQNGLFDKQSPASYQPVPQPNQYAYPPPPYAMQPQYMQPYAAPNVAMHNA
QPAVAHAAPIAQQPQPVAATPPAPVTLPASTLRYCDDTSRNDGPCIFDIG
HNSGQDTRNYLNEHTKSRVVAIEANPTLVESSKTKFADAIATDRLKLVGI
GITAIDPKKESTVRPKLKFYVNRNDKFSSFVESLGCRNYTGDVTAAGDRT
FCSVMELDTRSCSDLVREYGTPVYMKIDIEGKDRACLESLEALPEADRPK
YTSIENVTELDIDILLKLGYKKFKVVNQNMLQEGTTDEEEGHSGPWGEDA
DDAFVGKRWQTAHELKKRLPLKNRMILNGVERTAWYDLHGSK*
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spliced messenger RNA

>Ggra2241.t1 ID=Ggra2241.t1|Name=Ggra2241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000900_pilon:824126..825304+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCTGGACAGCCTGTACGCCCCGTCCGCCACCGGCGTCTTCCAAAA
GGCGTTGCGCCCCACCATCCGCCGCGAGCGACTCGTCGGCATCACCGCCT
TTGTCGCCGGCTTCCTGGTCTGCCACCTCTTCCTCACCTCCGGCTCAGCC
ATTCAGAACGGGCTCTTCGACAAGCAGTCACCCGCGTCGTACCAGCCCGT
TCCGCAACCGAACCAATACGCCTACCCGCCGCCGCCGTACGCCATGCAGC
CGCAGTACATGCAGCCGTATGCCGCGCCCAACGTCGCCATGCACAACGCG
CAGCCCGCCGTTGCACACGCCGCGCCGATTGCACAACAGCCGCAACCAGT
CGCCGCCACTCCCCCCGCTCCCGTCACTTTGCCCGCCTCCACGCTGCGCT
ACTGTGACGATACCTCAAGGAATGACGGCCCGTGCATCTTTGATATCGGC
CACAACAGTGGCCAGGACACGCGCAATTATCTCAACGAGCACACCAAGTC
TCGCGTGGTTGCCATTGAAGCCAACCCGACTCTGGTCGAAAGCTCCAAGA
CCAAGTTTGCTGACGCCATTGCCACGGATAGACTCAAGTTGGTCGGCATT
GGAATCACCGCCATCGACCCGAAGAAGGAGAGCACCGTGCGTCCGAAGCT
CAAGTTTTACGTCAACAGGAACGACAAGTTCAGCAGTTTTGTGGAGAGTC
TTGGATGCAGAAACTACACGGGCGATGTCACGGCGGCTGGCGATCGTACC
TTCTGCTCCGTGATGGAACTGGATACCAGAAGCTGCTCCGATCTTGTGCG
CGAGTACGGCACACCCGTGTACATGAAGATTGATATTGAGGGTAAGGACA
GAGCATGCCTCGAGTCGTTGGAGGCGCTGCCGGAAGCCGATCGTCCCAAG
TACACGTCCATCGAGAATGTGACTGAGCTTGATATCGACATCTTGCTGAA
ACTTGGCTACAAGAAGTTCAAGGTTGTGAACCAAAACATGTTGCAGGAGG
GTACTACTGACGAAGAGGAAGGACACAGTGGCCCTTGGGGCGAGGACGCT
GATGACGCGTTTGTTGGGAAGAGATGGCAAACGGCTCATGAACTGAAGAA
GAGGTTGCCGTTAAAGAACAGGATGATTCTCAACGGCGTTGAACGCACGG
CGTGGTATGATTTACACGGTAGCAAGTAA
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protein sequence of Ggra2241.t1

>Ggra2241.t1 ID=Ggra2241.t1|Name=Ggra2241.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MTLDSLYAPSATGVFQKALRPTIRRERLVGITAFVAGFLVCHLFLTSGSA
IQNGLFDKQSPASYQPVPQPNQYAYPPPPYAMQPQYMQPYAAPNVAMHNA
QPAVAHAAPIAQQPQPVAATPPAPVTLPASTLRYCDDTSRNDGPCIFDIG
HNSGQDTRNYLNEHTKSRVVAIEANPTLVESSKTKFADAIATDRLKLVGI
GITAIDPKKESTVRPKLKFYVNRNDKFSSFVESLGCRNYTGDVTAAGDRT
FCSVMELDTRSCSDLVREYGTPVYMKIDIEGKDRACLESLEALPEADRPK
YTSIENVTELDIDILLKLGYKKFKVVNQNMLQEGTTDEEEGHSGPWGEDA
DDAFVGKRWQTAHELKKRLPLKNRMILNGVERTAWYDLHGSK*
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mRNA from alignment at tig00000900_pilon:824126..825304+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2241.t1 ID=Ggra2241.t1|Name=Ggra2241.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000900_pilon:824126..825304+ (Gracilaria gracilis GNS1m male)
ATGACCCTGGACAGCCTGTACGCCCCGTCCGCCACCGGCGTCTTCCAAAA
GGCGTTGCGCCCCACCATCCGCCGCGAGCGACTCGTCGGCATCACCGCCT
TTGTCGCCGGCTTCCTGGTCTGCCACCTCTTCCTCACCTCCGGCTCAGCC
ATTCAGAACGGGCTCTTCGACAAGCAGTCACCCGCGTCGTACCAGCCCGT
TCCGCAACCGAACCAATACGCCTACCCGCCGCCGCCGTACGCCATGCAGC
CGCAGTACATGCAGCCGTATGCCGCGCCCAACGTCGCCATGCACAACGCG
CAGCCCGCCGTTGCACACGCCGCGCCGATTGCACAACAGCCGCAACCAGT
CGCCGCCACTCCCCCCGCTCCCGTCACTTTGCCCGCCTCCACGCTGCGCT
ACTGTGACGATACCTCAAGGAATGACGGCCCGTGCATCTTTGATATCGGC
CACAACAGTGGCCAGGACACGCGCAATTATCTCAACGAGCACACCAAGTC
TCGCGTGGTTGCCATTGAAGCCAACCCGACTCTGGTCGAAAGCTCCAAGA
CCAAGTTTGCTGACGCCATTGCCACGGATAGACTCAAGTTGGTCGGCATT
GGAATCACCGCCATCGACCCGAAGAAGGAGAGCACCGTGCGTCCGAAGCT
CAAGTTTTACGTCAACAGGAACGACAAGTTCAGCAGTTTTGTGGAGAGTC
TTGGATGCAGAAACTACACGGGCGATGTCACGGCGGCTGGCGATCGTACC
TTCTGCTCCGTGATGGAACTGGATACCAGAAGCTGCTCCGATCTTGTGCG
CGAGTACGGCACACCCGTGTACATGAAGATTGATATTGAGGGTAAGGACA
GAGCATGCCTCGAGTCGTTGGAGGCGCTGCCGGAAGCCGATCGTCCCAAG
TACACGTCCATCGAGAATGTGACTGAGCTTGATATCGACATCTTGCTGAA
ACTTGGCTACAAGAAGTTCAAGGTTGTGAACCAAAACATGTTGCAGGAGG
GTACTACTGACGAAGAGGAAGGACACAGTGGCCCTTGGGGCGAGGACGCT
GATGACGCGTTTGTTGGGAAGAGATGGCAAACGGCTCATGAACTGAAGAA
GAGGTTGCCGTTAAAGAACAGGATGATTCTCAACGGCGTTGAACGCACGG
CGTGGTATGATTTACACGGTAGCAAGTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:824126..825304+

>Ggra2241.t1 ID=Ggra2241.t1|Name=Ggra2241.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000900_pilon:824126..825304+ (Gracilaria gracilis GNS1m male)
ATGACCCTGGACAGCCTGTACGCCCCGTCCGCCACCGGCGTCTTCCAAAA
GGCGTTGCGCCCCACCATCCGCCGCGAGCGACTCGTCGGCATCACCGCCT
TTGTCGCCGGCTTCCTGGTCTGCCACCTCTTCCTCACCTCCGGCTCAGCC
ATTCAGAACGGGCTCTTCGACAAGCAGTCACCCGCGTCGTACCAGCCCGT
TCCGCAACCGAACCAATACGCCTACCCGCCGCCGCCGTACGCCATGCAGC
CGCAGTACATGCAGCCGTATGCCGCGCCCAACGTCGCCATGCACAACGCG
CAGCCCGCCGTTGCACACGCCGCGCCGATTGCACAACAGCCGCAACCAGT
CGCCGCCACTCCCCCCGCTCCCGTCACTTTGCCCGCCTCCACGCTGCGCT
ACTGTGACGATACCTCAAGGAATGACGGCCCGTGCATCTTTGATATCGGC
CACAACAGTGGCCAGGACACGCGCAATTATCTCAACGAGCACACCAAGTC
TCGCGTGGTTGCCATTGAAGCCAACCCGACTCTGGTCGAAAGCTCCAAGA
CCAAGTTTGCTGACGCCATTGCCACGGATAGACTCAAGTTGGTCGGCATT
GGAATCACCGCCATCGACCCGAAGAAGGAGAGCACCGTGCGTCCGAAGCT
CAAGTTTTACGTCAACAGGAACGACAAGTTCAGCAGTTTTGTGGAGAGTC
TTGGATGCAGAAACTACACGGGCGATGTCACGGCGGCTGGCGATCGTACC
TTCTGCTCCGTGATGGAACTGGATACCAGAAGCTGCTCCGATCTTGTGCG
CGAGTACGGCACACCCGTGTACATGAAGATTGATATTGAGGGTAAGGACA
GAGCATGCCTCGAGTCGTTGGAGGCGCTGCCGGAAGCCGATCGTCCCAAG
TACACGTCCATCGAGAATGTGACTGAGCTTGATATCGACATCTTGCTGAA
ACTTGGCTACAAGAAGTTCAAGGTTGTGAACCAAAACATGTTGCAGGAGG
GTACTACTGACGAAGAGGAAGGACACAGTGGCCCTTGGGGCGAGGACGCT
GATGACGCGTTTGTTGGGAAGAGATGGCAAACGGCTCATGAACTGAAGAA
GAGGTTGCCGTTAAAGAACAGGATGATTCTCAACGGCGTTGAACGCACGG
CGTGGTATGATTTACACGGTAGCAAGTAA
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