Ggra2235.t2 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2235.t2
Unique NameGgra2235.t2
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:800823..802383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706493.1
Preferred nameDRG2
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K06944
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010646,GO:0010647,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070300,GO:0071704,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0097708,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833
Evalue6.03e-157
EggNOG OGsCOG1163@1|root,KOG1486@2759|Eukaryota
DescriptionGTP binding
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2235Ggra2235Gracilaria gracilis GNS1m malegenetig00000900_pilon 800823..802383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t2Ggra2235.t2Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 800823..802383 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t2.stop1Ggra2235.t2.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 800823..800825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t2.CDS1Ggra2235.t2.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 800823..800844 -
Ggra2235.t2.CDS2Ggra2235.t2.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 800922..801645 -
Ggra2235.t2.CDS3Ggra2235.t2.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 801736..801937 -
Ggra2235.t2.CDS4Ggra2235.t2.CDS4Gracilaria gracilis GNS1m maleCDStig00000900_pilon 802032..802040 -
Ggra2235.t2.CDS5Ggra2235.t2.CDS5Gracilaria gracilis GNS1m maleCDStig00000900_pilon 802147..802383 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t2.exon1Ggra2235.t2.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 800823..800844 -
Ggra2235.t2.exon2Ggra2235.t2.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 800922..801645 -
Ggra2235.t2.exon3Ggra2235.t2.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 801736..801937 -
Ggra2235.t2.exon4Ggra2235.t2.exon4Gracilaria gracilis GNS1m maleexontig00000900_pilon 802032..802040 -
Ggra2235.t2.exon5Ggra2235.t2.exon5Gracilaria gracilis GNS1m maleexontig00000900_pilon 802147..802383 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t2.intron1Ggra2235.t2.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 800845..800921 -
Ggra2235.t2.intron2Ggra2235.t2.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 801646..801735 -
Ggra2235.t2.intron3Ggra2235.t2.intron3Gracilaria gracilis GNS1m maleintrontig00000900_pilon 801938..802031 -
Ggra2235.t2.intron4Ggra2235.t2.intron4Gracilaria gracilis GNS1m maleintrontig00000900_pilon 802041..802146 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t2.start1Ggra2235.t2.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 802381..802383 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2235.t2 ID=Ggra2235.t2|Name=Ggra2235.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=398bp
MPSRMRLAVDAKRNAIVVVLLPVQTSSLQTTVWRHHSWKEVYRSYRSENL
LGELIVKGKPLFLLRTLVFCSDVLLAYAIESKHLGILKAKLAKLRREALD
GPKTGGNAADRGFEVVKHGDARVAVVGFPSTGKSTFLSTVTDTKSEAANY
EFTTLTCVPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADL
ILLMLDATKSDVQRTLLENELESVGIRLNKRPPDVYFRPKQTGGIALTAT
VPLTKMTEKTALSVLKEYKIHNAELLIREDISVDELIDVLDGNRQYIKCL
YLYSKIDAVSLEEVDRLAREPNSVVMSCLLKLNLDYVVEQIWEYLQLCRV
YTKKQGSTPDFGEPIVLRGGSKVEDACRAIHRSLADPSQFRRCSNRY*
back to top

spliced messenger RNA

>Ggra2235.t2 ID=Ggra2235.t2|Name=Ggra2235.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000900_pilon:800823..802383- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCGCGCATGCGGCTTGCTGTTGATGCGAAGAGAAACGCTATCGT
TGTTGTGTTGCTGCCTGTTCAAACATCTTCACTTCAAACAACAGTCTGGC
GGCATCATTCTTGGAAAGAGGTCTATCGGTCCTACCGCTCTGAAAATTTA
CTTGGAGAGCTCATTGTGAAGGGAAAACCGCTTTTTCTACTCCGTACGCT
AGTTTTCTGTTCCGACGTTTTGCTTGCATACGCGATCGAATCAAAACATC
TGGGAATCCTCAAAGCAAAACTTGCGAAACTACGTCGCGAAGCTCTAGAT
GGTCCAAAAACAGGAGGAAACGCTGCAGATCGGGGATTTGAGGTTGTCAA
ACACGGCGATGCCAGAGTCGCAGTTGTAGGCTTTCCATCGACTGGAAAGA
GTACTTTCCTAAGTACTGTTACGGATACCAAGAGTGAAGCTGCGAACTAC
GAGTTTACCACATTGACATGTGTGCCGGGTATCCTCGAGCACAAAGGAGC
TACAATCCAGTTGTTGGATTTACCTGGTATCATTGAGGGCGCCGCGCAAG
GAAAAGGACGGGGTCGGCAGGTAATCGCCGTAGCACGCTCAGCAGACCTC
ATTTTGCTTATGCTTGATGCCACAAAATCGGATGTGCAAAGGACTCTCTT
GGAGAATGAACTTGAGTCTGTTGGGATCCGACTTAATAAGAGACCACCAG
ATGTGTATTTCAGACCAAAACAAACCGGAGGAATCGCCTTGACAGCAACC
GTTCCGCTGACAAAAATGACCGAGAAAACCGCACTAAGTGTATTGAAAGA
GTACAAGATTCATAACGCCGAACTTCTGATCCGTGAAGACATAAGTGTGG
ATGAGCTCATTGATGTGCTCGATGGAAACAGACAGTACATCAAGTGCCTG
TACCTGTACAGCAAAATCGACGCCGTTTCGTTGGAAGAAGTGGATCGACT
AGCGCGAGAGCCAAACTCGGTGGTGATGTCATGTTTATTGAAATTGAACC
TCGACTACGTTGTGGAGCAAATATGGGAATACCTACAACTTTGTAGAGTA
TACACCAAGAAACAAGGCTCAACTCCAGACTTTGGGGAACCTATCGTACT
TCGCGGGGGCAGCAAGGTGGAAGACGCATGTCGCGCGATCCACAGAAGTC
TGGCAGATCCATCACAATTTCGACGTTGTTCAAATCGTTACTAA
back to top

protein sequence of Ggra2235.t2

>Ggra2235.t2 ID=Ggra2235.t2|Name=Ggra2235.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=398bp
MPSRMRLAVDAKRNAIVVVLLPVQTSSLQTTVWRHHSWKEVYRSYRSENL
LGELIVKGKPLFLLRTLVFCSDVLLAYAIESKHLGILKAKLAKLRREALD
GPKTGGNAADRGFEVVKHGDARVAVVGFPSTGKSTFLSTVTDTKSEAANY
EFTTLTCVPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADL
ILLMLDATKSDVQRTLLENELESVGIRLNKRPPDVYFRPKQTGGIALTAT
VPLTKMTEKTALSVLKEYKIHNAELLIREDISVDELIDVLDGNRQYIKCL
YLYSKIDAVSLEEVDRLAREPNSVVMSCLLKLNLDYVVEQIWEYLQLCRV
YTKKQGSTPDFGEPIVLRGGSKVEDACRAIHRSLADPSQFRRCSNRY*
back to top

mRNA from alignment at tig00000900_pilon:800823..802383-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2235.t2 ID=Ggra2235.t2|Name=Ggra2235.t2|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1561bp|location=Sequence derived from alignment at tig00000900_pilon:800823..802383- (Gracilaria gracilis GNS1m male)
ATGCCATCGCGCATGCGGCTTGCTGTTGATGCGAAGAGAAACGCTATCGT
TGTTGTGTTGCTGCCTGTTCAAACATCTTCACTTCAAACAACAGTCTGGC
GGCATCATTCTTGGAAAGAGGTCTATCGGTCCTACCGCTCTGAAAATTTA
CTTGGAGAGCTCATTGTGAAGGGAAAACCGCTTTTTCTACTCCGTACGCT
AGTTTTCTGTTCCGACGTTTTGCTTGCATACGCGATCGTATCACACGCGA
CAAGATGGGTGTTCAAGAAAGAATCAAAGATATTGAAGCCGAAATGGCCC
GTACCCAGAAGAACAAGGCCACTGAAGGAGTGAGTTAAAACAGGAATCAA
AAGTGAGTGTGTCTGAAAGATGCAAGGGTGCAAGCAACGTCAGATTCCAA
ACGTGCGACTAACCACATGGCAATCGAATTTCGGTGCCCTCCAAAGCATC
TGGGAATCCTCAAAGCAAAACTTGCGAAACTACGTCGCGAAGCTCTAGAT
GGTCCAAAAACAGGAGGAAACGCTGCAGATCGGGGATTTGAGGTTGTCAA
ACACGGCGATGCCAGAGTCGCAGTTGTAGGCTTTCCATCGACTGGAAAGA
GTACTTTCCTAAGTACTGTTACGGATACCAAGAGTGAAGCTGCGAACTGT
ACGTGAATCAATCCACTTCTAGCGCCTTGTATATGCTGTACACCTAACAA
ATTCAGCCGTTTTCCATGATCCTTCTTTCCCCCATTAGACGAGTTTACCA
CATTGACATGTGTGCCGGGTATCCTCGAGCACAAAGGAGCTACAATCCAG
TTGTTGGATTTACCTGGTATCATTGAGGGCGCCGCGCAAGGAAAAGGACG
GGGTCGGCAGGTAATCGCCGTAGCACGCTCAGCAGACCTCATTTTGCTTA
TGCTTGATGCCACAAAATCGGATGTGCAAAGGACTCTCTTGGAGAATGAA
CTTGAGTCTGTTGGGATCCGACTTAATAAGAGACCACCAGATGTGTATTT
CAGACCAAAACAAACCGGAGGAATCGCCTTGACAGCAACCGTTCCGCTGA
CAAAAATGACCGAGAAAACCGCACTAAGTGTATTGAAAGAGTACAAGATT
CATAACGCCGAACTTCTGATCCGTGAAGACATAAGTGTGGATGAGCTCAT
TGATGTGCTCGATGGAAACAGACAGTACATCAAGTGCCTGTACCTGTACA
GCAAAATCGACGCCGTTTCGTTGGAAGAAGTGGATCGACTAGCGCGAGAG
CCAAACTCGGTGGTGATGTCATGTTTATTGAAATTGAACCTCGACTACGT
TGTGGAGCAAATATGGGAATACCTACAACTTTGTAGAGTATACACCAAGA
AACAAGGCTCAACTCCAGACTTTGGGGAACCTATCGTACTTCGCGGGGGC
AGCAAGGTGGAAGACGCATGTCGCGCGATCCACAGAAGTCTGGCAGATCC
ATCACAATTTCGGTACGCTCTTGTGTGGGGAAAATCTACGAAGCACGACC
CACAGCGCGTTGGACTGTCTCATAATCTAACCGACGAAGACGTTGTTCAA
ATCGTTACTAA
back to top

Coding sequence (CDS) from alignment at tig00000900_pilon:800823..802383-

>Ggra2235.t2 ID=Ggra2235.t2|Name=Ggra2235.t2|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1194bp|location=Sequence derived from alignment at tig00000900_pilon:800823..802383- (Gracilaria gracilis GNS1m male)
ATGCCATCGCGCATGCGGCTTGCTGTTGATGCGAAGAGAAACGCTATCGT
TGTTGTGTTGCTGCCTGTTCAAACATCTTCACTTCAAACAACAGTCTGGC
GGCATCATTCTTGGAAAGAGGTCTATCGGTCCTACCGCTCTGAAAATTTA
CTTGGAGAGCTCATTGTGAAGGGAAAACCGCTTTTTCTACTCCGTACGCT
AGTTTTCTGTTCCGACGTTTTGCTTGCATACGCGATCGAATCAAAACATC
TGGGAATCCTCAAAGCAAAACTTGCGAAACTACGTCGCGAAGCTCTAGAT
GGTCCAAAAACAGGAGGAAACGCTGCAGATCGGGGATTTGAGGTTGTCAA
ACACGGCGATGCCAGAGTCGCAGTTGTAGGCTTTCCATCGACTGGAAAGA
GTACTTTCCTAAGTACTGTTACGGATACCAAGAGTGAAGCTGCGAACTAC
GAGTTTACCACATTGACATGTGTGCCGGGTATCCTCGAGCACAAAGGAGC
TACAATCCAGTTGTTGGATTTACCTGGTATCATTGAGGGCGCCGCGCAAG
GAAAAGGACGGGGTCGGCAGGTAATCGCCGTAGCACGCTCAGCAGACCTC
ATTTTGCTTATGCTTGATGCCACAAAATCGGATGTGCAAAGGACTCTCTT
GGAGAATGAACTTGAGTCTGTTGGGATCCGACTTAATAAGAGACCACCAG
ATGTGTATTTCAGACCAAAACAAACCGGAGGAATCGCCTTGACAGCAACC
GTTCCGCTGACAAAAATGACCGAGAAAACCGCACTAAGTGTATTGAAAGA
GTACAAGATTCATAACGCCGAACTTCTGATCCGTGAAGACATAAGTGTGG
ATGAGCTCATTGATGTGCTCGATGGAAACAGACAGTACATCAAGTGCCTG
TACCTGTACAGCAAAATCGACGCCGTTTCGTTGGAAGAAGTGGATCGACT
AGCGCGAGAGCCAAACTCGGTGGTGATGTCATGTTTATTGAAATTGAACC
TCGACTACGTTGTGGAGCAAATATGGGAATACCTACAACTTTGTAGAGTA
TACACCAAGAAACAAGGCTCAACTCCAGACTTTGGGGAACCTATCGTACT
TCGCGGGGGCAGCAAGGTGGAAGACGCATGTCGCGCGATCCACAGAAGTC
TGGCAGATCCATCACAATTTCGACGTTGTTCAAATCGTTACTAA
back to top