Ggra2235.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2235.t1
Unique NameGgra2235.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:800823..802129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706493.1
Preferred nameDRG2
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K06944
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010646,GO:0010647,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070300,GO:0071704,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0097708,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833
Evalue5.86e-171
EggNOG OGsCOG1163@1|root,KOG1486@2759|Eukaryota
DescriptionGTP binding
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2235Ggra2235Gracilaria gracilis GNS1m malegenetig00000900_pilon 800823..802383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t1Ggra2235.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 800823..802129 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t1.stop1Ggra2235.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 800823..800825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t1.CDS1Ggra2235.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 800823..800844 -
Ggra2235.t1.CDS2Ggra2235.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 800922..801645 -
Ggra2235.t1.CDS3Ggra2235.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 801736..801937 -
Ggra2235.t1.CDS4Ggra2235.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000900_pilon 802055..802129 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t1.exon1Ggra2235.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 800823..800844 -
Ggra2235.t1.exon2Ggra2235.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 800922..801645 -
Ggra2235.t1.exon3Ggra2235.t1.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 801736..801937 -
Ggra2235.t1.exon4Ggra2235.t1.exon4Gracilaria gracilis GNS1m maleexontig00000900_pilon 802055..802129 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t1.intron1Ggra2235.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 800845..800921 -
Ggra2235.t1.intron2Ggra2235.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 801646..801735 -
Ggra2235.t1.intron3Ggra2235.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000900_pilon 801938..802054 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2235.t1.start1Ggra2235.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 802127..802129 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2235.t1 ID=Ggra2235.t1|Name=Ggra2235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MGVQERIKDIEAEMARTQKNKATEGHLGILKAKLAKLRREALDGPKTGGN
AADRGFEVVKHGDARVAVVGFPSTGKSTFLSTVTDTKSEAANYEFTTLTC
VPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADLILLMLDA
TKSDVQRTLLENELESVGIRLNKRPPDVYFRPKQTGGIALTATVPLTKMT
EKTALSVLKEYKIHNAELLIREDISVDELIDVLDGNRQYIKCLYLYSKID
AVSLEEVDRLAREPNSVVMSCLLKLNLDYVVEQIWEYLQLCRVYTKKQGS
TPDFGEPIVLRGGSKVEDACRAIHRSLADPSQFRRCSNRY*
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spliced messenger RNA

>Ggra2235.t1 ID=Ggra2235.t1|Name=Ggra2235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000900_pilon:800823..802129- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTTCAAGAAAGAATCAAAGATATTGAAGCCGAAATGGCCCGTAC
CCAGAAGAACAAGGCCACTGAAGGACATCTGGGAATCCTCAAAGCAAAAC
TTGCGAAACTACGTCGCGAAGCTCTAGATGGTCCAAAAACAGGAGGAAAC
GCTGCAGATCGGGGATTTGAGGTTGTCAAACACGGCGATGCCAGAGTCGC
AGTTGTAGGCTTTCCATCGACTGGAAAGAGTACTTTCCTAAGTACTGTTA
CGGATACCAAGAGTGAAGCTGCGAACTACGAGTTTACCACATTGACATGT
GTGCCGGGTATCCTCGAGCACAAAGGAGCTACAATCCAGTTGTTGGATTT
ACCTGGTATCATTGAGGGCGCCGCGCAAGGAAAAGGACGGGGTCGGCAGG
TAATCGCCGTAGCACGCTCAGCAGACCTCATTTTGCTTATGCTTGATGCC
ACAAAATCGGATGTGCAAAGGACTCTCTTGGAGAATGAACTTGAGTCTGT
TGGGATCCGACTTAATAAGAGACCACCAGATGTGTATTTCAGACCAAAAC
AAACCGGAGGAATCGCCTTGACAGCAACCGTTCCGCTGACAAAAATGACC
GAGAAAACCGCACTAAGTGTATTGAAAGAGTACAAGATTCATAACGCCGA
ACTTCTGATCCGTGAAGACATAAGTGTGGATGAGCTCATTGATGTGCTCG
ATGGAAACAGACAGTACATCAAGTGCCTGTACCTGTACAGCAAAATCGAC
GCCGTTTCGTTGGAAGAAGTGGATCGACTAGCGCGAGAGCCAAACTCGGT
GGTGATGTCATGTTTATTGAAATTGAACCTCGACTACGTTGTGGAGCAAA
TATGGGAATACCTACAACTTTGTAGAGTATACACCAAGAAACAAGGCTCA
ACTCCAGACTTTGGGGAACCTATCGTACTTCGCGGGGGCAGCAAGGTGGA
AGACGCATGTCGCGCGATCCACAGAAGTCTGGCAGATCCATCACAATTTC
GACGTTGTTCAAATCGTTACTAA
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protein sequence of Ggra2235.t1

>Ggra2235.t1 ID=Ggra2235.t1|Name=Ggra2235.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MGVQERIKDIEAEMARTQKNKATEGHLGILKAKLAKLRREALDGPKTGGN
AADRGFEVVKHGDARVAVVGFPSTGKSTFLSTVTDTKSEAANYEFTTLTC
VPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADLILLMLDA
TKSDVQRTLLENELESVGIRLNKRPPDVYFRPKQTGGIALTATVPLTKMT
EKTALSVLKEYKIHNAELLIREDISVDELIDVLDGNRQYIKCLYLYSKID
AVSLEEVDRLAREPNSVVMSCLLKLNLDYVVEQIWEYLQLCRVYTKKQGS
TPDFGEPIVLRGGSKVEDACRAIHRSLADPSQFRRCSNRY*
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mRNA from alignment at tig00000900_pilon:800823..802129-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2235.t1 ID=Ggra2235.t1|Name=Ggra2235.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1307bp|location=Sequence derived from alignment at tig00000900_pilon:800823..802129- (Gracilaria gracilis GNS1m male)
ATGGGTGTTCAAGAAAGAATCAAAGATATTGAAGCCGAAATGGCCCGTAC
CCAGAAGAACAAGGCCACTGAAGGAGTGAGTTAAAACAGGAATCAAAAGT
GAGTGTGTCTGAAAGATGCAAGGGTGCAAGCAACGTCAGATTCCAAACGT
GCGACTAACCACATGGCAATCGAATTTCGGTGCCCTCCAAAGCATCTGGG
AATCCTCAAAGCAAAACTTGCGAAACTACGTCGCGAAGCTCTAGATGGTC
CAAAAACAGGAGGAAACGCTGCAGATCGGGGATTTGAGGTTGTCAAACAC
GGCGATGCCAGAGTCGCAGTTGTAGGCTTTCCATCGACTGGAAAGAGTAC
TTTCCTAAGTACTGTTACGGATACCAAGAGTGAAGCTGCGAACTGTACGT
GAATCAATCCACTTCTAGCGCCTTGTATATGCTGTACACCTAACAAATTC
AGCCGTTTTCCATGATCCTTCTTTCCCCCATTAGACGAGTTTACCACATT
GACATGTGTGCCGGGTATCCTCGAGCACAAAGGAGCTACAATCCAGTTGT
TGGATTTACCTGGTATCATTGAGGGCGCCGCGCAAGGAAAAGGACGGGGT
CGGCAGGTAATCGCCGTAGCACGCTCAGCAGACCTCATTTTGCTTATGCT
TGATGCCACAAAATCGGATGTGCAAAGGACTCTCTTGGAGAATGAACTTG
AGTCTGTTGGGATCCGACTTAATAAGAGACCACCAGATGTGTATTTCAGA
CCAAAACAAACCGGAGGAATCGCCTTGACAGCAACCGTTCCGCTGACAAA
AATGACCGAGAAAACCGCACTAAGTGTATTGAAAGAGTACAAGATTCATA
ACGCCGAACTTCTGATCCGTGAAGACATAAGTGTGGATGAGCTCATTGAT
GTGCTCGATGGAAACAGACAGTACATCAAGTGCCTGTACCTGTACAGCAA
AATCGACGCCGTTTCGTTGGAAGAAGTGGATCGACTAGCGCGAGAGCCAA
ACTCGGTGGTGATGTCATGTTTATTGAAATTGAACCTCGACTACGTTGTG
GAGCAAATATGGGAATACCTACAACTTTGTAGAGTATACACCAAGAAACA
AGGCTCAACTCCAGACTTTGGGGAACCTATCGTACTTCGCGGGGGCAGCA
AGGTGGAAGACGCATGTCGCGCGATCCACAGAAGTCTGGCAGATCCATCA
CAATTTCGGTACGCTCTTGTGTGGGGAAAATCTACGAAGCACGACCCACA
GCGCGTTGGACTGTCTCATAATCTAACCGACGAAGACGTTGTTCAAATCG
TTACTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:800823..802129-

>Ggra2235.t1 ID=Ggra2235.t1|Name=Ggra2235.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000900_pilon:800823..802129- (Gracilaria gracilis GNS1m male)
ATGGGTGTTCAAGAAAGAATCAAAGATATTGAAGCCGAAATGGCCCGTAC
CCAGAAGAACAAGGCCACTGAAGGACATCTGGGAATCCTCAAAGCAAAAC
TTGCGAAACTACGTCGCGAAGCTCTAGATGGTCCAAAAACAGGAGGAAAC
GCTGCAGATCGGGGATTTGAGGTTGTCAAACACGGCGATGCCAGAGTCGC
AGTTGTAGGCTTTCCATCGACTGGAAAGAGTACTTTCCTAAGTACTGTTA
CGGATACCAAGAGTGAAGCTGCGAACTACGAGTTTACCACATTGACATGT
GTGCCGGGTATCCTCGAGCACAAAGGAGCTACAATCCAGTTGTTGGATTT
ACCTGGTATCATTGAGGGCGCCGCGCAAGGAAAAGGACGGGGTCGGCAGG
TAATCGCCGTAGCACGCTCAGCAGACCTCATTTTGCTTATGCTTGATGCC
ACAAAATCGGATGTGCAAAGGACTCTCTTGGAGAATGAACTTGAGTCTGT
TGGGATCCGACTTAATAAGAGACCACCAGATGTGTATTTCAGACCAAAAC
AAACCGGAGGAATCGCCTTGACAGCAACCGTTCCGCTGACAAAAATGACC
GAGAAAACCGCACTAAGTGTATTGAAAGAGTACAAGATTCATAACGCCGA
ACTTCTGATCCGTGAAGACATAAGTGTGGATGAGCTCATTGATGTGCTCG
ATGGAAACAGACAGTACATCAAGTGCCTGTACCTGTACAGCAAAATCGAC
GCCGTTTCGTTGGAAGAAGTGGATCGACTAGCGCGAGAGCCAAACTCGGT
GGTGATGTCATGTTTATTGAAATTGAACCTCGACTACGTTGTGGAGCAAA
TATGGGAATACCTACAACTTTGTAGAGTATACACCAAGAAACAAGGCTCA
ACTCCAGACTTTGGGGAACCTATCGTACTTCGCGGGGGCAGCAAGGTGGA
AGACGCATGTCGCGCGATCCACAGAAGTCTGGCAGATCCATCACAATTTC
GACGTTGTTCAAATCGTTACTAA
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