Ggra2223.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2223.t1
Unique NameGgra2223.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:758774..760381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog126957.SMAR012004-PA
Preferred nameIMMP1L
PFAMsPeptidase_S24,Peptidase_S26
Max annot lvl33208|Metazoa
KEGG koko:K09647
KEGG Pathwayko03060,map03060
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006626,GO:0006627,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034982,GO:0042720,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0065003,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:1901564
Evalue1.94e-05
EggNOG OGsCOG0681@1|root,KOG0171@2759|Eukaryota,395CK@33154|Opisthokonta,3BK5H@33208|Metazoa,3CT1V@33213|Bilateria,41ZD6@6656|Arthropoda
DescriptionSerine-type peptidase activity. It is involved in the biological process described with protein processing involved in protein targeting to mitochondrion
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2223Ggra2223Gracilaria gracilis GNS1m malegenetig00000900_pilon 758774..760381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2223.t1Ggra2223.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 758774..760381 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2223.t1.start1Ggra2223.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 758774..758776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2223.t1.CDS1Ggra2223.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 758774..759256 +
Ggra2223.t1.CDS2Ggra2223.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 759340..759386 +
Ggra2223.t1.CDS3Ggra2223.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 759492..759535 +
Ggra2223.t1.CDS4Ggra2223.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000900_pilon 759981..760381 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2223.t1.exon1Ggra2223.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 758774..759256 +
Ggra2223.t1.exon2Ggra2223.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 759340..759386 +
Ggra2223.t1.exon3Ggra2223.t1.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 759492..759535 +
Ggra2223.t1.exon4Ggra2223.t1.exon4Gracilaria gracilis GNS1m maleexontig00000900_pilon 759981..760381 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2223.t1.intron1Ggra2223.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 759257..759339 +
Ggra2223.t1.intron2Ggra2223.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 759387..759491 +
Ggra2223.t1.intron3Ggra2223.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000900_pilon 759536..759980 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2223.t1.stop1Ggra2223.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 760379..760381 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2223.t1 ID=Ggra2223.t1|Name=Ggra2223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=325bp
MAVPHRDGFCRYDAVLALFVTILVVATTRELLLHQRVMRHYVGDEFNVIS
RPSQRSHVDHAPFQASLLKLSQRQRVQHILQRLSTFDGSARGSVRIVHAF
VAMIGVIGMFSAIVGALVAPWLNETSDDGLDEDRFSYWVTEEDDHGDDRC
CGVMREQRYWLYDHTASYNSLETSPKSCSSSPHGRRIGFAEPIVFHDKVA
TIHLETTSDMEPTIPSNTPCLITRNAKPSNYRRGEVLAIMAPDGHLTLRR
VVALPGDYVREASSTTIVPRGYIWVHHDQDQANCALPHGKTPIALVTGRL
TASLGGSAAIIPSKNVVTPSMPYN*
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spliced messenger RNA

>Ggra2223.t1 ID=Ggra2223.t1|Name=Ggra2223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000900_pilon:758774..760381+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGCCGCATCGCGATGGATTCTGTCGGTACGACGCTGTATTGGC
GTTGTTCGTTACCATTCTTGTGGTTGCTACCACTCGCGAGCTTCTTCTAC
ACCAGCGCGTTATGCGTCACTACGTTGGAGATGAGTTCAACGTCATCTCG
CGACCTTCACAACGTTCTCACGTCGACCATGCCCCGTTTCAAGCGTCTTT
GTTGAAGCTTTCCCAAAGACAAAGAGTTCAACACATCTTGCAAAGGTTGT
CCACATTTGATGGTAGCGCTCGTGGTTCCGTGCGTATCGTGCATGCTTTT
GTGGCTATGATTGGAGTAATTGGAATGTTTTCGGCTATCGTGGGTGCTCT
GGTTGCTCCGTGGTTGAACGAGACAAGTGATGATGGCTTGGATGAGGATC
GCTTTTCGTACTGGGTCACAGAAGAAGATGATCACGGAGACGATCGTTGT
TGTGGCGTTATGAGGGAACAACGTTACTGGCTCTACGACCACACTGCTTC
CTACAACAGTTTAGAAACTTCTCCCAAAAGCTGCAGCAGCAGCCCACACG
GGAGGAGAATTGGCTTTGCAGAGCCCATTGTATTCCATGATAAAGTGGCC
ACCATCCACCTCGAGACTACGAGCGATATGGAACCAACTATACCGTCCAA
CACACCATGTCTCATAACTCGAAACGCAAAGCCTAGCAACTATCGCCGTG
GGGAGGTTCTTGCCATAATGGCACCGGACGGTCATTTAACACTGCGTCGT
GTTGTCGCACTTCCCGGCGATTATGTTCGAGAAGCTTCGTCAACCACCAT
TGTTCCTCGTGGATATATTTGGGTCCATCACGATCAAGATCAAGCCAACT
GCGCGCTACCACACGGGAAGACCCCTATTGCCCTTGTTACCGGTAGGCTG
ACGGCGTCCCTGGGAGGAAGCGCTGCGATTATCCCGTCAAAAAATGTTGT
AACTCCCTCTATGCCCTATAACTAA
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protein sequence of Ggra2223.t1

>Ggra2223.t1 ID=Ggra2223.t1|Name=Ggra2223.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=325bp
MAVPHRDGFCRYDAVLALFVTILVVATTRELLLHQRVMRHYVGDEFNVIS
RPSQRSHVDHAPFQASLLKLSQRQRVQHILQRLSTFDGSARGSVRIVHAF
VAMIGVIGMFSAIVGALVAPWLNETSDDGLDEDRFSYWVTEEDDHGDDRC
CGVMREQRYWLYDHTASYNSLETSPKSCSSSPHGRRIGFAEPIVFHDKVA
TIHLETTSDMEPTIPSNTPCLITRNAKPSNYRRGEVLAIMAPDGHLTLRR
VVALPGDYVREASSTTIVPRGYIWVHHDQDQANCALPHGKTPIALVTGRL
TASLGGSAAIIPSKNVVTPSMPYN*
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mRNA from alignment at tig00000900_pilon:758774..760381+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2223.t1 ID=Ggra2223.t1|Name=Ggra2223.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000900_pilon:758774..760381+ (Gracilaria gracilis GNS1m male)
ATGGCTGTGCCGCATCGCGATGGATTCTGTCGGTACGACGCTGTATTGGC
GTTGTTCGTTACCATTCTTGTGGTTGCTACCACTCGCGAGCTTCTTCTAC
ACCAGCGCGTTATGCGTCACTACGTTGGAGATGAGTTCAACGTCATCTCG
CGACCTTCACAACGTTCTCACGTCGACCATGCCCCGTTTCAAGCGTCTTT
GTTGAAGCTTTCCCAAAGACAAAGAGTTCAACACATCTTGCAAAGGTTGT
CCACATTTGATGGTAGCGCTCGTGGTTCCGTGCGTATCGTGCATGCTTTT
GTGGCTATGATTGGAGTAATTGGAATGTTTTCGGCTATCGTGGGTGCTCT
GGTTGCTCCGTGGTTGAACGAGACAAGTGATGATGGCTTGGATGAGGATC
GCTTTTCGTACTGGGTCACAGAAGAAGATGATCACGGAGACGATCGTTGT
TGTGGCGTTATGAGGGAACAACGTTACTGGCTCGTGAGGTTGTTAGATTC
GCCATGAATTCTACCTTGCTGCCAACTCTTGCTTATAACTCTTGCTTATT
CCTTTTTGTATCGTAGTACGACCACACTGCTTCCTACAACAGTTTAGAAA
CTTCTCCCAAAAGGTAAGAGAGACACTCGCAACAGCGTTGCCCCTCTCTC
ACATACACTTTAACGTTGTCTGTCCTCAGATACAGCCTTTGTCATCACAA
CTAACATCATGATAACAGCTGCAGCAGCAGCCCACACGGGAGGAGAATTG
GCTTTGCAGAGCGTCTGTTTGGCCAGGAATAAACTTGTTTGTCGACGGTC
CAGCAATGCAGGAGAGCACTGCTGGTGCGAAAGACAGGACAAATAAAACA
GCAAAACTTGTTTTGCGGCTAGAACGGTGCGCTGCCATTTTTTGAGCCCG
GACAGCTCCTGTTTATCTATTCCTGGCCAAACAGACGCTCTGCAAAGCAA
TTCTCCTCCCGTGCGGGGAGGACTGCGGACACCCTCGCGGATGCCAACCC
CAACTCTAAAAGAATTCCAGAAATTAAGGTGCAGACTTGAGGACTGTTCT
CACCGATCCCAAACAGCAAGGGGGGCTATTTAACCCTCTTCAACAACGAG
GTTTGTTCATAACATGTTCTGTTATTGTGCTTTATTCGAGACGTTCGTGT
ACAAAACCTAAGGTATGATCACACGGATACTGTCGTTGCTATCGTATGTT
CCGCTAGCCATTGTATTCCATGATAAAGTGGCCACCATCCACCTCGAGAC
TACGAGCGATATGGAACCAACTATACCGTCCAACACACCATGTCTCATAA
CTCGAAACGCAAAGCCTAGCAACTATCGCCGTGGGGAGGTTCTTGCCATA
ATGGCACCGGACGGTCATTTAACACTGCGTCGTGTTGTCGCACTTCCCGG
CGATTATGTTCGAGAAGCTTCGTCAACCACCATTGTTCCTCGTGGATATA
TTTGGGTCCATCACGATCAAGATCAAGCCAACTGCGCGCTACCACACGGG
AAGACCCCTATTGCCCTTGTTACCGGTAGGCTGACGGCGTCCCTGGGAGG
AAGCGCTGCGATTATCCCGTCAAAAAATGTTGTAACTCCCTCTATGCCCT
ATAACTAA
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Coding sequence (CDS) from alignment at tig00000900_pilon:758774..760381+

>Ggra2223.t1 ID=Ggra2223.t1|Name=Ggra2223.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=975bp|location=Sequence derived from alignment at tig00000900_pilon:758774..760381+ (Gracilaria gracilis GNS1m male)
ATGGCTGTGCCGCATCGCGATGGATTCTGTCGGTACGACGCTGTATTGGC
GTTGTTCGTTACCATTCTTGTGGTTGCTACCACTCGCGAGCTTCTTCTAC
ACCAGCGCGTTATGCGTCACTACGTTGGAGATGAGTTCAACGTCATCTCG
CGACCTTCACAACGTTCTCACGTCGACCATGCCCCGTTTCAAGCGTCTTT
GTTGAAGCTTTCCCAAAGACAAAGAGTTCAACACATCTTGCAAAGGTTGT
CCACATTTGATGGTAGCGCTCGTGGTTCCGTGCGTATCGTGCATGCTTTT
GTGGCTATGATTGGAGTAATTGGAATGTTTTCGGCTATCGTGGGTGCTCT
GGTTGCTCCGTGGTTGAACGAGACAAGTGATGATGGCTTGGATGAGGATC
GCTTTTCGTACTGGGTCACAGAAGAAGATGATCACGGAGACGATCGTTGT
TGTGGCGTTATGAGGGAACAACGTTACTGGCTCTACGACCACACTGCTTC
CTACAACAGTTTAGAAACTTCTCCCAAAAGCTGCAGCAGCAGCCCACACG
GGAGGAGAATTGGCTTTGCAGAGCCCATTGTATTCCATGATAAAGTGGCC
ACCATCCACCTCGAGACTACGAGCGATATGGAACCAACTATACCGTCCAA
CACACCATGTCTCATAACTCGAAACGCAAAGCCTAGCAACTATCGCCGTG
GGGAGGTTCTTGCCATAATGGCACCGGACGGTCATTTAACACTGCGTCGT
GTTGTCGCACTTCCCGGCGATTATGTTCGAGAAGCTTCGTCAACCACCAT
TGTTCCTCGTGGATATATTTGGGTCCATCACGATCAAGATCAAGCCAACT
GCGCGCTACCACACGGGAAGACCCCTATTGCCCTTGTTACCGGTAGGCTG
ACGGCGTCCCTGGGAGGAAGCGCTGCGATTATCCCGTCAAAAAATGTTGT
AACTCCCTCTATGCCCTATAACTAA
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